data_1X7P # _model_server_result.job_id X_DRHQxhMSvhPsG_rF9s4w _model_server_result.datetime_utc '2024-11-26 02:00:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x7p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1X7P # _exptl.entry_id 1X7P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X7P _cell.length_a 76.881 _cell.length_b 76.881 _cell.length_c 209.818 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X7P _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 1X7P _atom_sites.fract_transf_matrix[1][1] 0.013007 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004766 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAM A 1 301 301 SAM SAM . D 2 SAM B 1 302 302 SAM SAM . E 3 HOH A 1 302 1 HOH HOH . E 3 HOH A 2 303 2 HOH HOH . E 3 HOH A 3 304 3 HOH HOH . E 3 HOH A 4 305 5 HOH HOH . E 3 HOH A 5 306 6 HOH HOH . E 3 HOH A 6 307 9 HOH HOH . E 3 HOH A 7 308 11 HOH HOH . E 3 HOH A 8 309 12 HOH HOH . E 3 HOH A 9 310 14 HOH HOH . E 3 HOH A 10 311 15 HOH HOH . E 3 HOH A 11 312 16 HOH HOH . E 3 HOH A 12 313 17 HOH HOH . E 3 HOH A 13 314 18 HOH HOH . E 3 HOH A 14 315 21 HOH HOH . E 3 HOH A 15 316 22 HOH HOH . E 3 HOH A 16 317 23 HOH HOH . E 3 HOH A 17 318 24 HOH HOH . E 3 HOH A 18 319 25 HOH HOH . E 3 HOH A 19 320 27 HOH HOH . E 3 HOH A 20 321 30 HOH HOH . E 3 HOH A 21 322 31 HOH HOH . E 3 HOH A 22 323 33 HOH HOH . E 3 HOH A 23 324 34 HOH HOH . E 3 HOH A 24 325 35 HOH HOH . E 3 HOH A 25 326 37 HOH HOH . E 3 HOH A 26 327 41 HOH HOH . E 3 HOH A 27 328 42 HOH HOH . E 3 HOH A 28 329 45 HOH HOH . E 3 HOH A 29 330 46 HOH HOH . E 3 HOH A 30 331 47 HOH HOH . E 3 HOH A 31 332 48 HOH HOH . E 3 HOH A 32 333 51 HOH HOH . E 3 HOH A 33 334 52 HOH HOH . E 3 HOH A 34 335 55 HOH HOH . E 3 HOH A 35 336 58 HOH HOH . E 3 HOH A 36 337 59 HOH HOH . E 3 HOH A 37 338 60 HOH HOH . E 3 HOH A 38 339 61 HOH HOH . E 3 HOH A 39 340 62 HOH HOH . E 3 HOH A 40 341 63 HOH HOH . E 3 HOH A 41 342 64 HOH HOH . E 3 HOH A 42 343 65 HOH HOH . E 3 HOH A 43 344 67 HOH HOH . E 3 HOH A 44 345 68 HOH HOH . E 3 HOH A 45 346 69 HOH HOH . E 3 HOH A 46 347 70 HOH HOH . E 3 HOH A 47 348 71 HOH HOH . E 3 HOH A 48 349 72 HOH HOH . E 3 HOH A 49 350 73 HOH HOH . E 3 HOH A 50 351 74 HOH HOH . E 3 HOH A 51 352 75 HOH HOH . E 3 HOH A 52 353 76 HOH HOH . E 3 HOH A 53 354 77 HOH HOH . E 3 HOH A 54 355 78 HOH HOH . E 3 HOH A 55 356 79 HOH HOH . E 3 HOH A 56 357 80 HOH HOH . E 3 HOH A 57 358 82 HOH HOH . E 3 HOH A 58 359 83 HOH HOH . F 3 HOH B 1 303 4 HOH HOH . F 3 HOH B 2 304 7 HOH HOH . F 3 HOH B 3 305 8 HOH HOH . F 3 HOH B 4 306 10 HOH HOH . F 3 HOH B 5 307 13 HOH HOH . F 3 HOH B 6 308 19 HOH HOH . F 3 HOH B 7 309 20 HOH HOH . F 3 HOH B 8 310 26 HOH HOH . F 3 HOH B 9 311 28 HOH HOH . F 3 HOH B 10 312 29 HOH HOH . F 3 HOH B 11 313 32 HOH HOH . F 3 HOH B 12 314 36 HOH HOH . F 3 HOH B 13 315 38 HOH HOH . F 3 HOH B 14 316 39 HOH HOH . F 3 HOH B 15 317 40 HOH HOH . F 3 HOH B 16 318 43 HOH HOH . F 3 HOH B 17 319 44 HOH HOH . F 3 HOH B 18 320 49 HOH HOH . F 3 HOH B 19 321 50 HOH HOH . F 3 HOH B 20 322 53 HOH HOH . F 3 HOH B 21 323 54 HOH HOH . F 3 HOH B 22 324 56 HOH HOH . F 3 HOH B 23 325 57 HOH HOH . F 3 HOH B 24 326 66 HOH HOH . F 3 HOH B 25 327 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 2 45.732 14.009 73.221 1 58.68 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . C 2 46.389 12.758 73.634 1 58.62 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . C 2 46.101 11.715 72.558 1 59.7 ? C SAM 301 A 1 HETATM 4 O O SAM . . . C 2 46.68 11.839 71.461 1 60.49 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . C 2 45.305 10.78 72.79 1 60.65 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . C 2 45.987 12.208 75.023 1 57.7 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . C 2 46.045 13.191 76.195 1 53.94 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . C 2 46.707 12.554 77.778 1 48.21 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . C 2 46.263 10.808 77.839 1 48.48 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . C 2 45.642 13.342 79.014 1 41.89 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . C 2 46.151 14.706 79.477 1 38.11 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . C 2 47.223 14.553 80.379 1 34.51 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . C 2 46.716 15.63 78.407 1 35.89 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . C 2 45.738 16.385 77.775 1 34.49 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . C 2 47.639 16.511 79.189 1 34.66 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . C 2 46.936 17.516 79.859 1 35.84 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . C 2 48.197 15.548 80.195 1 33.06 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . C 2 49.455 14.956 79.707 1 32.26 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . C 2 49.702 13.646 79.402 1 32.04 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . C 2 50.992 13.496 79.024 1 31.2 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . C 2 51.592 14.703 79.101 1 31.66 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . C 2 52.893 15.122 78.831 1 30.26 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . C 2 53.822 14.292 78.374 1 30.62 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . C 2 53.187 16.446 78.977 1 29.92 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . C 2 52.219 17.341 79.411 1 30.8 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . C 2 50.931 16.939 79.677 1 28.69 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . C 2 50.627 15.63 79.519 1 31.65 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #