data_1X83 # _model_server_result.job_id 3khBuWRC5eB_fI4X2h1Ulw _model_server_result.datetime_utc '2024-11-22 23:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x83 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 1X83 # _exptl.entry_id 1X83 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.003 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(S)-4-BROMO-3-HYDROXY-3-METHYLBUTYL DIPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X83 _cell.length_a 69.09 _cell.length_b 71.88 _cell.length_c 91.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X83 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A CB CYS 67 A CYS 67 1_555 E C5 SBH . A SBH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale2 B CB CYS 67 B CYS 67 1_555 H C5 SBH . B SBH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.81 ? metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A NE2 HIS 32 A HIS 32 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc3 A O CYS 67 A CYS 67 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.157 ? metalc ? metalc4 A NE2 HIS 69 A HIS 69 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc5 A OE2 GLU 87 A GLU 87 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc6 A OE1 GLU 114 A GLU 114 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc7 A OE2 GLU 114 A GLU 114 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc8 A OE2 GLU 116 A GLU 116 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc9 E O3 SBH . A SBH 301 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc10 E O6 SBH . A SBH 301 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 D MG MG . A MG 401 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 D MG MG . A MG 401 1_555 I O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc13 B NE2 HIS 25 B HIS 25 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc14 B NE2 HIS 32 B HIS 32 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc15 B O CYS 67 B CYS 67 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc16 B NE2 HIS 69 B HIS 69 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc17 B OE2 GLU 87 B GLU 87 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc18 B OE1 GLU 114 B GLU 114 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc19 B OE2 GLU 114 B GLU 114 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc20 B OE2 GLU 116 B GLU 116 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc21 H O6 SBH . B SBH 301 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc22 H O3 SBH . B SBH 301 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc23 G MG MG . B MG 401 1_555 J O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc24 G MG MG . B MG 401 1_555 J O HOH . B HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'C5 H13 Br O8 P2' _chem_comp.formula_weight 343.003 _chem_comp.id SBH _chem_comp.mon_nstd_flag . _chem_comp.name '(S)-4-BROMO-3-HYDROXY-3-METHYLBUTYL DIPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1X83 _atom_sites.fract_transf_matrix[1][1] 0.014474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 201 MN MN . D 3 MG A 1 401 401 MG MG . E 4 SBH A 1 301 301 SBH SBH . F 2 MN B 1 201 201 MN MN . G 3 MG B 1 401 401 MG MG . H 4 SBH B 1 301 301 SBH SBH . I 5 HOH A 1 501 501 HOH HOH . I 5 HOH A 2 503 503 HOH HOH . I 5 HOH A 3 504 504 HOH HOH . I 5 HOH A 4 505 505 HOH HOH . I 5 HOH A 5 506 506 HOH HOH . I 5 HOH A 6 507 507 HOH HOH . I 5 HOH A 7 516 516 HOH HOH . I 5 HOH A 8 517 517 HOH HOH . I 5 HOH A 9 518 518 HOH HOH . I 5 HOH A 10 520 520 HOH HOH . I 5 HOH A 11 521 521 HOH HOH . I 5 HOH A 12 524 524 HOH HOH . I 5 HOH A 13 526 526 HOH HOH . I 5 HOH A 14 527 527 HOH HOH . I 5 HOH A 15 529 529 HOH HOH . I 5 HOH A 16 530 530 HOH HOH . I 5 HOH A 17 533 533 HOH HOH . I 5 HOH A 18 535 535 HOH HOH . I 5 HOH A 19 536 536 HOH HOH . I 5 HOH A 20 537 537 HOH HOH . I 5 HOH A 21 538 538 HOH HOH . I 5 HOH A 22 539 539 HOH HOH . I 5 HOH A 23 541 541 HOH HOH . I 5 HOH A 24 542 542 HOH HOH . I 5 HOH A 25 543 543 HOH HOH . I 5 HOH A 26 544 544 HOH HOH . I 5 HOH A 27 546 546 HOH HOH . I 5 HOH A 28 548 548 HOH HOH . I 5 HOH A 29 557 557 HOH HOH . I 5 HOH A 30 558 558 HOH HOH . I 5 HOH A 31 559 559 HOH HOH . I 5 HOH A 32 560 560 HOH HOH . I 5 HOH A 33 561 561 HOH HOH . I 5 HOH A 34 562 562 HOH HOH . I 5 HOH A 35 565 565 HOH HOH . I 5 HOH A 36 566 566 HOH HOH . I 5 HOH A 37 567 567 HOH HOH . I 5 HOH A 38 569 569 HOH HOH . I 5 HOH A 39 570 570 HOH HOH . I 5 HOH A 40 572 572 HOH HOH . I 5 HOH A 41 573 573 HOH HOH . I 5 HOH A 42 574 574 HOH HOH . I 5 HOH A 43 575 575 HOH HOH . I 5 HOH A 44 576 576 HOH HOH . I 5 HOH A 45 577 577 HOH HOH . I 5 HOH A 46 578 578 HOH HOH . I 5 HOH A 47 579 579 HOH HOH . I 5 HOH A 48 580 580 HOH HOH . I 5 HOH A 49 581 581 HOH HOH . I 5 HOH A 50 582 582 HOH HOH . I 5 HOH A 51 583 583 HOH HOH . I 5 HOH A 52 584 584 HOH HOH . I 5 HOH A 53 587 587 HOH HOH . I 5 HOH A 54 588 588 HOH HOH . I 5 HOH A 55 589 589 HOH HOH . I 5 HOH A 56 590 590 HOH HOH . I 5 HOH A 57 591 591 HOH HOH . I 5 HOH A 58 592 592 HOH HOH . I 5 HOH A 59 593 593 HOH HOH . I 5 HOH A 60 594 594 HOH HOH . I 5 HOH A 61 595 595 HOH HOH . I 5 HOH A 62 597 597 HOH HOH . I 5 HOH A 63 601 601 HOH HOH . I 5 HOH A 64 602 602 HOH HOH . I 5 HOH A 65 603 603 HOH HOH . I 5 HOH A 66 604 604 HOH HOH . I 5 HOH A 67 605 605 HOH HOH . J 5 HOH B 1 502 502 HOH HOH . J 5 HOH B 2 508 508 HOH HOH . J 5 HOH B 3 509 509 HOH HOH . J 5 HOH B 4 510 510 HOH HOH . J 5 HOH B 5 511 511 HOH HOH . J 5 HOH B 6 512 512 HOH HOH . J 5 HOH B 7 513 513 HOH HOH . J 5 HOH B 8 514 514 HOH HOH . J 5 HOH B 9 515 515 HOH HOH . J 5 HOH B 10 519 519 HOH HOH . J 5 HOH B 11 522 522 HOH HOH . J 5 HOH B 12 523 523 HOH HOH . J 5 HOH B 13 525 525 HOH HOH . J 5 HOH B 14 528 528 HOH HOH . J 5 HOH B 15 531 531 HOH HOH . J 5 HOH B 16 532 532 HOH HOH . J 5 HOH B 17 534 534 HOH HOH . J 5 HOH B 18 540 540 HOH HOH . J 5 HOH B 19 545 545 HOH HOH . J 5 HOH B 20 547 547 HOH HOH . J 5 HOH B 21 549 549 HOH HOH . J 5 HOH B 22 550 550 HOH HOH . J 5 HOH B 23 551 551 HOH HOH . J 5 HOH B 24 552 552 HOH HOH . J 5 HOH B 25 553 553 HOH HOH . J 5 HOH B 26 554 554 HOH HOH . J 5 HOH B 27 555 555 HOH HOH . J 5 HOH B 28 556 556 HOH HOH . J 5 HOH B 29 563 563 HOH HOH . J 5 HOH B 30 564 564 HOH HOH . J 5 HOH B 31 568 568 HOH HOH . J 5 HOH B 32 571 571 HOH HOH . J 5 HOH B 33 585 585 HOH HOH . J 5 HOH B 34 586 586 HOH HOH . J 5 HOH B 35 596 596 HOH HOH . J 5 HOH B 36 598 598 HOH HOH . J 5 HOH B 37 599 599 HOH HOH . J 5 HOH B 38 600 600 HOH HOH . J 5 HOH B 39 606 606 HOH HOH . J 5 HOH B 40 607 607 HOH HOH . J 5 HOH B 41 608 608 HOH HOH . J 5 HOH B 42 609 609 HOH HOH . J 5 HOH B 43 610 610 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 SBH . . . H 4 39.838 11.952 7.482 1 30.78 ? O1 SBH 301 B 1 HETATM 2 O O2 SBH . . . H 4 41.984 12.922 7.691 1 22.1 ? O2 SBH 301 B 1 HETATM 3 O O3 SBH . . . H 4 39.979 14.16 8.178 1 20.02 ? O3 SBH 301 B 1 HETATM 4 P P1 SBH . . . H 4 40.577 12.807 8.222 1 28.16 ? P1 SBH 301 B 1 HETATM 5 O O4 SBH . . . H 4 40.717 12.317 9.666 1 25.2 ? O4 SBH 301 B 1 HETATM 6 O O5 SBH . . . H 4 39.092 11.059 10.892 1 28.67 ? O5 SBH 301 B 1 HETATM 7 O O6 SBH . . . H 4 38.791 13.445 10.586 1 20.34 ? O6 SBH 301 B 1 HETATM 8 P P2 SBH . . . H 4 39.701 12.263 10.804 1 30.54 ? P2 SBH 301 B 1 HETATM 9 O O7 SBH . . . H 4 40.482 12.622 12.066 1 66.36 ? O7 SBH 301 B 1 HETATM 10 C C1 SBH . . . H 4 40.622 11.487 12.952 0 65.97 ? C1 SBH 301 B 1 HETATM 11 C C2 SBH . . . H 4 41.532 11.848 14.152 0 65.6 ? C2 SBH 301 B 1 HETATM 12 C C3 SBH . . . H 4 40.795 12.945 15.03 0 65.23 ? C3 SBH 301 B 1 HETATM 13 C C4 SBH . . . H 4 41.7 14.298 14.947 0 65.25 ? C4 SBH 301 B 1 HETATM 14 C C5 SBH . . . H 4 39.403 13.345 14.293 0 65.25 ? C5 SBH 301 B 1 HETATM 15 O O8 SBH . . . H 4 40.562 12.369 16.545 1 63.72 ? O8 SBH 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #