data_1X84 # _model_server_result.job_id DU1NX9LKhkUdrtbiwZteAA _model_server_result.datetime_utc '2024-10-18 16:29:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x84 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 1X84 # _exptl.entry_id 1X84 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X84 _cell.length_a 69.09 _cell.length_b 71.88 _cell.length_c 92.73 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X84 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc2 A NE2 HIS 32 A HIS 32 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc3 A NE2 HIS 69 A HIS 69 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 B NE2 HIS 25 B HIS 25 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc5 B NE2 HIS 32 B HIS 32 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc6 B NE2 HIS 69 B HIS 69 1_555 F MN MN . B MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc7 A O CYS 67 A CYS 67 1_555 D MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 B O CYS 67 B CYS 67 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? covale ? covale1 A OE1 GLU 116 A GLU 116 1_555 E C5 SBH . A SBH 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.533 ? metalc ? metalc9 C MN MN . A MN 201 1_555 A OE1 GLU 114 A GLU 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc10 C MN MN . A MN 201 1_555 A OE2 GLU 114 A GLU 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc11 C MN MN . A MN 201 1_555 A OE2 GLU 116 A GLU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc12 E O6 SBH . A SBH 301 1_555 D MG MG . A MG 401 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc13 D MG MG . A MG 401 1_555 A OE2 GLU 87 A GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc14 D MG MG . A MG 401 1_555 I O HOH . A HOH 6004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc15 D MG MG . A MG 401 1_555 I O HOH . A HOH 6003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 D MG MG . A MG 401 1_555 E O6 SBH . A SBH 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.184 ? metalc ? metalc17 D MG MG . A MG 401 1_555 E O3 SBH . A SBH 301 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.477 ? metalc ? metalc18 D MG MG . A MG 401 1_555 E O3 SBH . A SBH 301 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? metalc ? metalc19 F MN MN . B MN 201 1_555 B OE2 GLU 116 B GLU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc20 F MN MN . B MN 201 1_555 B OE1 GLU 114 B GLU 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc21 F MN MN . B MN 201 1_555 B OE2 GLU 114 B GLU 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc22 H O6 SBH . B SBH 301 1_555 G MG MG . B MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc23 G MG MG . B MG 401 1_555 J O HOH . B HOH 6015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc24 G MG MG . B MG 401 1_555 J O HOH . B HOH 6014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc25 G MG MG . B MG 401 1_555 H O3 SBH . B SBH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc26 G MG MG . B MG 401 1_555 B OE2 GLU 87 B GLU 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1X84 _atom_sites.fract_transf_matrix[1][1] 0.014474 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013912 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 201 MN MN . D 3 MG A 1 401 401 MG MG . E 4 SBH A 1 301 301 SBH SBH . F 2 MN B 1 201 201 MN MN . G 3 MG B 1 401 401 MG MG . H 4 SBH B 1 301 301 SBH SBH . I 5 HOH A 1 999 999 HOH HOH . I 5 HOH A 2 6003 6003 HOH HOH . I 5 HOH A 3 6004 6004 HOH HOH . I 5 HOH A 4 6005 6005 HOH HOH . I 5 HOH A 5 6007 6007 HOH HOH . I 5 HOH A 6 6016 6016 HOH HOH . I 5 HOH A 7 7003 7003 HOH HOH . I 5 HOH A 8 7005 7005 HOH HOH . I 5 HOH A 9 7009 7009 HOH HOH . I 5 HOH A 10 7011 7011 HOH HOH . I 5 HOH A 11 7012 7012 HOH HOH . I 5 HOH A 12 7014 7014 HOH HOH . I 5 HOH A 13 7015 7015 HOH HOH . I 5 HOH A 14 7017 7017 HOH HOH . I 5 HOH A 15 7018 7018 HOH HOH . I 5 HOH A 16 7021 7021 HOH HOH . I 5 HOH A 17 7022 7022 HOH HOH . I 5 HOH A 18 7023 7023 HOH HOH . I 5 HOH A 19 7024 7024 HOH HOH . I 5 HOH A 20 7026 7026 HOH HOH . I 5 HOH A 21 7027 7027 HOH HOH . I 5 HOH A 22 7028 7028 HOH HOH . I 5 HOH A 23 7029 7029 HOH HOH . I 5 HOH A 24 7031 7031 HOH HOH . I 5 HOH A 25 7033 7033 HOH HOH . I 5 HOH A 26 7042 7042 HOH HOH . I 5 HOH A 27 7043 7043 HOH HOH . I 5 HOH A 28 7044 7044 HOH HOH . I 5 HOH A 29 7045 7045 HOH HOH . I 5 HOH A 30 7047 7047 HOH HOH . I 5 HOH A 31 7050 7050 HOH HOH . I 5 HOH A 32 7051 7051 HOH HOH . I 5 HOH A 33 7052 7052 HOH HOH . I 5 HOH A 34 7054 7054 HOH HOH . I 5 HOH A 35 7055 7055 HOH HOH . I 5 HOH A 36 7057 7057 HOH HOH . I 5 HOH A 37 7058 7058 HOH HOH . I 5 HOH A 38 7059 7059 HOH HOH . I 5 HOH A 39 7060 7060 HOH HOH . I 5 HOH A 40 7061 7061 HOH HOH . I 5 HOH A 41 7062 7062 HOH HOH . I 5 HOH A 42 7063 7063 HOH HOH . I 5 HOH A 43 8002 8002 HOH HOH . I 5 HOH A 44 8003 8003 HOH HOH . I 5 HOH A 45 8004 8004 HOH HOH . I 5 HOH A 46 8005 8005 HOH HOH . I 5 HOH A 47 8006 8006 HOH HOH . I 5 HOH A 48 8008 8008 HOH HOH . I 5 HOH A 49 8009 8009 HOH HOH . I 5 HOH A 50 8010 8010 HOH HOH . I 5 HOH A 51 8011 8011 HOH HOH . I 5 HOH A 52 8012 8012 HOH HOH . I 5 HOH A 53 8013 8013 HOH HOH . I 5 HOH A 54 8014 8014 HOH HOH . I 5 HOH A 55 9001 9001 HOH HOH . I 5 HOH A 56 9004 9004 HOH HOH . I 5 HOH A 57 9005 9005 HOH HOH . I 5 HOH A 58 9006 9006 HOH HOH . I 5 HOH A 59 9007 9007 HOH HOH . I 5 HOH A 60 9010 9010 HOH HOH . I 5 HOH A 61 9011 9011 HOH HOH . I 5 HOH A 62 9012 9012 HOH HOH . I 5 HOH A 63 9013 9013 HOH HOH . I 5 HOH A 64 9016 9016 HOH HOH . I 5 HOH A 65 9019 9019 HOH HOH . I 5 HOH A 66 9020 9020 HOH HOH . I 5 HOH A 67 9021 9021 HOH HOH . I 5 HOH A 68 9022 9022 HOH HOH . I 5 HOH A 69 9023 9023 HOH HOH . I 5 HOH A 70 9024 9024 HOH HOH . I 5 HOH A 71 9028 9028 HOH HOH . I 5 HOH A 72 9031 9031 HOH HOH . I 5 HOH A 73 9034 9034 HOH HOH . I 5 HOH A 74 9035 9035 HOH HOH . I 5 HOH A 75 9036 9036 HOH HOH . I 5 HOH A 76 9037 9037 HOH HOH . I 5 HOH A 77 9038 9038 HOH HOH . J 5 HOH B 1 6001 6001 HOH HOH . J 5 HOH B 2 6008 6008 HOH HOH . J 5 HOH B 3 6009 6009 HOH HOH . J 5 HOH B 4 6010 6010 HOH HOH . J 5 HOH B 5 6011 6011 HOH HOH . J 5 HOH B 6 6012 6012 HOH HOH . J 5 HOH B 7 6013 6013 HOH HOH . J 5 HOH B 8 6014 6014 HOH HOH . J 5 HOH B 9 6015 6015 HOH HOH . J 5 HOH B 10 7002 7002 HOH HOH . J 5 HOH B 11 7004 7004 HOH HOH . J 5 HOH B 12 7006 7006 HOH HOH . J 5 HOH B 13 7007 7007 HOH HOH . J 5 HOH B 14 7008 7008 HOH HOH . J 5 HOH B 15 7010 7010 HOH HOH . J 5 HOH B 16 7013 7013 HOH HOH . J 5 HOH B 17 7016 7016 HOH HOH . J 5 HOH B 18 7019 7019 HOH HOH . J 5 HOH B 19 7020 7020 HOH HOH . J 5 HOH B 20 7025 7025 HOH HOH . J 5 HOH B 21 7030 7030 HOH HOH . J 5 HOH B 22 7032 7032 HOH HOH . J 5 HOH B 23 7034 7034 HOH HOH . J 5 HOH B 24 7035 7035 HOH HOH . J 5 HOH B 25 7036 7036 HOH HOH . J 5 HOH B 26 7037 7037 HOH HOH . J 5 HOH B 27 7038 7038 HOH HOH . J 5 HOH B 28 7039 7039 HOH HOH . J 5 HOH B 29 7040 7040 HOH HOH . J 5 HOH B 30 7041 7041 HOH HOH . J 5 HOH B 31 7048 7048 HOH HOH . J 5 HOH B 32 7049 7049 HOH HOH . J 5 HOH B 33 7053 7053 HOH HOH . J 5 HOH B 34 7056 7056 HOH HOH . J 5 HOH B 35 8001 8001 HOH HOH . J 5 HOH B 36 8007 8007 HOH HOH . J 5 HOH B 37 9002 9002 HOH HOH . J 5 HOH B 38 9003 9003 HOH HOH . J 5 HOH B 39 9008 9008 HOH HOH . J 5 HOH B 40 9009 9009 HOH HOH . J 5 HOH B 41 9014 9014 HOH HOH . J 5 HOH B 42 9015 9015 HOH HOH . J 5 HOH B 43 9017 9017 HOH HOH . J 5 HOH B 44 9018 9018 HOH HOH . J 5 HOH B 45 9025 9025 HOH HOH . J 5 HOH B 46 9026 9026 HOH HOH . J 5 HOH B 47 9027 9027 HOH HOH . J 5 HOH B 48 9029 9029 HOH HOH . J 5 HOH B 49 9030 9030 HOH HOH . J 5 HOH B 50 9032 9032 HOH HOH . J 5 HOH B 51 9033 9033 HOH HOH . J 5 HOH B 52 9039 9039 HOH HOH . J 5 HOH B 53 9040 9040 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 7.269 _atom_site.Cartn_y 8.474 _atom_site.Cartn_z 8.984 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #