data_1X92 # _model_server_result.job_id 4WyR7jhAcwPJrYy6qDNUWQ _model_server_result.datetime_utc '2024-11-29 10:45:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x92 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 1X92 # _exptl.entry_id 1X92 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 290.162 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-O-phosphono-D-glycero-alpha-D-manno-heptopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X92 _cell.length_a 126.338 _cell.length_b 126.338 _cell.length_c 113.24 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X92 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 63.169 -109.411917 -18.873333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C7 H15 O10 P' _chem_comp.formula_weight 290.162 _chem_comp.id M7P _chem_comp.mon_nstd_flag n _chem_comp.name 7-O-phosphono-D-glycero-alpha-D-manno-heptopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE;7-O-phosphono-D-glycero-alpha-D-manno-heptose;7-O-phosphono-D-glycero-D-manno-heptose;7-O-phosphono-D-glycero-manno-heptose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O10 P M7P sing 218 n n O10 H10 M7P sing 219 n n P O8 M7P doub 220 n n P O9 M7P sing 221 n n P O7 M7P sing 222 n n O9 HO9 M7P sing 223 n n O7 C7 M7P sing 224 n n C7 C6 M7P sing 225 n n C7 H71 M7P sing 226 n n C7 H72 M7P sing 227 n n C6 O6 M7P sing 228 n n C6 C5 M7P sing 229 n n C6 H6 M7P sing 230 n n O6 HO6 M7P sing 231 n n C5 O5 M7P sing 232 n n C5 C4 M7P sing 233 n n C5 H5 M7P sing 234 n n O5 C1 M7P sing 235 n n C1 O1 M7P sing 236 n n C1 C2 M7P sing 237 n n C1 H1 M7P sing 238 n n O1 HO1 M7P sing 239 n n C2 O2 M7P sing 240 n n C2 C3 M7P sing 241 n n C2 H2 M7P sing 242 n n O2 HO2 M7P sing 243 n n C3 O3 M7P sing 244 n n C3 C4 M7P sing 245 n n C3 H3 M7P sing 246 n n O3 HO3 M7P sing 247 n n C4 O4 M7P sing 248 n n C4 H4 M7P sing 249 n n O4 HO4 M7P sing 250 n n # _atom_sites.entry_id 1X92 _atom_sites.fract_transf_matrix[1][1] 0.007915 _atom_sites.fract_transf_matrix[1][2] 0.00457 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00914 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 M7P A 1 302 302 M7P M7P . D 2 M7P B 1 301 301 M7P M7P . E 3 HOH A 1 303 303 HOH HOH . E 3 HOH A 2 304 304 HOH HOH . E 3 HOH A 3 307 307 HOH HOH . E 3 HOH A 4 309 309 HOH HOH . E 3 HOH A 5 310 310 HOH HOH . E 3 HOH A 6 311 311 HOH HOH . E 3 HOH A 7 313 313 HOH HOH . E 3 HOH A 8 314 314 HOH HOH . E 3 HOH A 9 315 315 HOH HOH . E 3 HOH A 10 319 319 HOH HOH . E 3 HOH A 11 321 321 HOH HOH . E 3 HOH A 12 323 323 HOH HOH . E 3 HOH A 13 326 326 HOH HOH . E 3 HOH A 14 327 327 HOH HOH . E 3 HOH A 15 331 331 HOH HOH . E 3 HOH A 16 333 333 HOH HOH . E 3 HOH A 17 338 338 HOH HOH . E 3 HOH A 18 341 341 HOH HOH . E 3 HOH A 19 343 343 HOH HOH . E 3 HOH A 20 347 347 HOH HOH . E 3 HOH A 21 351 351 HOH HOH . E 3 HOH A 22 353 353 HOH HOH . E 3 HOH A 23 355 355 HOH HOH . E 3 HOH A 24 357 357 HOH HOH . E 3 HOH A 25 358 358 HOH HOH . E 3 HOH A 26 359 359 HOH HOH . E 3 HOH A 27 363 363 HOH HOH . E 3 HOH A 28 365 365 HOH HOH . E 3 HOH A 29 366 366 HOH HOH . E 3 HOH A 30 373 373 HOH HOH . E 3 HOH A 31 374 374 HOH HOH . E 3 HOH A 32 375 375 HOH HOH . E 3 HOH A 33 377 377 HOH HOH . E 3 HOH A 34 380 380 HOH HOH . E 3 HOH A 35 381 381 HOH HOH . E 3 HOH A 36 382 382 HOH HOH . E 3 HOH A 37 383 383 HOH HOH . E 3 HOH A 38 385 385 HOH HOH . E 3 HOH A 39 386 386 HOH HOH . E 3 HOH A 40 387 387 HOH HOH . E 3 HOH A 41 388 388 HOH HOH . E 3 HOH A 42 389 389 HOH HOH . E 3 HOH A 43 390 390 HOH HOH . E 3 HOH A 44 392 392 HOH HOH . E 3 HOH A 45 395 395 HOH HOH . E 3 HOH A 46 397 397 HOH HOH . E 3 HOH A 47 398 398 HOH HOH . E 3 HOH A 48 403 403 HOH HOH . E 3 HOH A 49 409 409 HOH HOH . E 3 HOH A 50 410 410 HOH HOH . E 3 HOH A 51 411 411 HOH HOH . E 3 HOH A 52 413 413 HOH HOH . E 3 HOH A 53 414 414 HOH HOH . E 3 HOH A 54 416 416 HOH HOH . E 3 HOH A 55 417 417 HOH HOH . E 3 HOH A 56 418 418 HOH HOH . E 3 HOH A 57 419 419 HOH HOH . E 3 HOH A 58 420 420 HOH HOH . E 3 HOH A 59 422 422 HOH HOH . E 3 HOH A 60 432 432 HOH HOH . E 3 HOH A 61 434 434 HOH HOH . E 3 HOH A 62 435 435 HOH HOH . E 3 HOH A 63 437 437 HOH HOH . E 3 HOH A 64 438 438 HOH HOH . E 3 HOH A 65 439 439 HOH HOH . E 3 HOH A 66 441 441 HOH HOH . E 3 HOH A 67 442 442 HOH HOH . E 3 HOH A 68 445 445 HOH HOH . E 3 HOH A 69 450 450 HOH HOH . E 3 HOH A 70 458 458 HOH HOH . E 3 HOH A 71 461 461 HOH HOH . E 3 HOH A 72 462 462 HOH HOH . E 3 HOH A 73 466 466 HOH HOH . E 3 HOH A 74 469 469 HOH HOH . E 3 HOH A 75 470 470 HOH HOH . E 3 HOH A 76 472 472 HOH HOH . E 3 HOH A 77 473 473 HOH HOH . E 3 HOH A 78 474 474 HOH HOH . E 3 HOH A 79 479 479 HOH HOH . E 3 HOH A 80 480 480 HOH HOH . E 3 HOH A 81 482 482 HOH HOH . E 3 HOH A 82 483 483 HOH HOH . E 3 HOH A 83 484 484 HOH HOH . E 3 HOH A 84 485 485 HOH HOH . E 3 HOH A 85 486 486 HOH HOH . E 3 HOH A 86 487 487 HOH HOH . E 3 HOH A 87 489 489 HOH HOH . E 3 HOH A 88 492 492 HOH HOH . E 3 HOH A 89 495 495 HOH HOH . E 3 HOH A 90 496 496 HOH HOH . E 3 HOH A 91 497 497 HOH HOH . F 3 HOH B 1 305 305 HOH HOH . F 3 HOH B 2 306 306 HOH HOH . F 3 HOH B 3 308 308 HOH HOH . F 3 HOH B 4 312 312 HOH HOH . F 3 HOH B 5 316 316 HOH HOH . F 3 HOH B 6 317 317 HOH HOH . F 3 HOH B 7 318 318 HOH HOH . F 3 HOH B 8 320 320 HOH HOH . F 3 HOH B 9 322 322 HOH HOH . F 3 HOH B 10 324 324 HOH HOH . F 3 HOH B 11 325 325 HOH HOH . F 3 HOH B 12 328 328 HOH HOH . F 3 HOH B 13 329 329 HOH HOH . F 3 HOH B 14 330 330 HOH HOH . F 3 HOH B 15 332 332 HOH HOH . F 3 HOH B 16 334 334 HOH HOH . F 3 HOH B 17 335 335 HOH HOH . F 3 HOH B 18 336 336 HOH HOH . F 3 HOH B 19 337 337 HOH HOH . F 3 HOH B 20 339 339 HOH HOH . F 3 HOH B 21 340 340 HOH HOH . F 3 HOH B 22 342 342 HOH HOH . F 3 HOH B 23 344 344 HOH HOH . F 3 HOH B 24 345 345 HOH HOH . F 3 HOH B 25 346 346 HOH HOH . F 3 HOH B 26 348 348 HOH HOH . F 3 HOH B 27 349 349 HOH HOH . F 3 HOH B 28 350 350 HOH HOH . F 3 HOH B 29 352 352 HOH HOH . F 3 HOH B 30 354 354 HOH HOH . F 3 HOH B 31 356 356 HOH HOH . F 3 HOH B 32 360 360 HOH HOH . F 3 HOH B 33 361 361 HOH HOH . F 3 HOH B 34 362 362 HOH HOH . F 3 HOH B 35 364 364 HOH HOH . F 3 HOH B 36 367 367 HOH HOH . F 3 HOH B 37 368 368 HOH HOH . F 3 HOH B 38 369 369 HOH HOH . F 3 HOH B 39 370 370 HOH HOH . F 3 HOH B 40 371 371 HOH HOH . F 3 HOH B 41 372 372 HOH HOH . F 3 HOH B 42 376 376 HOH HOH . F 3 HOH B 43 378 378 HOH HOH . F 3 HOH B 44 379 379 HOH HOH . F 3 HOH B 45 384 384 HOH HOH . F 3 HOH B 46 391 391 HOH HOH . F 3 HOH B 47 393 393 HOH HOH . F 3 HOH B 48 394 394 HOH HOH . F 3 HOH B 49 396 396 HOH HOH . F 3 HOH B 50 399 399 HOH HOH . F 3 HOH B 51 400 400 HOH HOH . F 3 HOH B 52 401 401 HOH HOH . F 3 HOH B 53 402 402 HOH HOH . F 3 HOH B 54 404 404 HOH HOH . F 3 HOH B 55 405 405 HOH HOH . F 3 HOH B 56 406 406 HOH HOH . F 3 HOH B 57 407 407 HOH HOH . F 3 HOH B 58 408 408 HOH HOH . F 3 HOH B 59 412 412 HOH HOH . F 3 HOH B 60 415 415 HOH HOH . F 3 HOH B 61 421 421 HOH HOH . F 3 HOH B 62 423 423 HOH HOH . F 3 HOH B 63 424 424 HOH HOH . F 3 HOH B 64 425 425 HOH HOH . F 3 HOH B 65 426 426 HOH HOH . F 3 HOH B 66 427 427 HOH HOH . F 3 HOH B 67 428 428 HOH HOH . F 3 HOH B 68 429 429 HOH HOH . F 3 HOH B 69 430 430 HOH HOH . F 3 HOH B 70 431 431 HOH HOH . F 3 HOH B 71 433 433 HOH HOH . F 3 HOH B 72 436 436 HOH HOH . F 3 HOH B 73 440 440 HOH HOH . F 3 HOH B 74 443 443 HOH HOH . F 3 HOH B 75 444 444 HOH HOH . F 3 HOH B 76 446 446 HOH HOH . F 3 HOH B 77 447 447 HOH HOH . F 3 HOH B 78 448 448 HOH HOH . F 3 HOH B 79 449 449 HOH HOH . F 3 HOH B 80 451 451 HOH HOH . F 3 HOH B 81 452 452 HOH HOH . F 3 HOH B 82 453 453 HOH HOH . F 3 HOH B 83 454 454 HOH HOH . F 3 HOH B 84 455 455 HOH HOH . F 3 HOH B 85 456 456 HOH HOH . F 3 HOH B 86 457 457 HOH HOH . F 3 HOH B 87 459 459 HOH HOH . F 3 HOH B 88 460 460 HOH HOH . F 3 HOH B 89 463 463 HOH HOH . F 3 HOH B 90 464 464 HOH HOH . F 3 HOH B 91 465 465 HOH HOH . F 3 HOH B 92 467 467 HOH HOH . F 3 HOH B 93 468 468 HOH HOH . F 3 HOH B 94 471 471 HOH HOH . F 3 HOH B 95 475 475 HOH HOH . F 3 HOH B 96 476 476 HOH HOH . F 3 HOH B 97 477 477 HOH HOH . F 3 HOH B 98 478 478 HOH HOH . F 3 HOH B 99 481 481 HOH HOH . F 3 HOH B 100 488 488 HOH HOH . F 3 HOH B 101 490 490 HOH HOH . F 3 HOH B 102 491 491 HOH HOH . F 3 HOH B 103 493 493 HOH HOH . F 3 HOH B 104 494 494 HOH HOH . F 3 HOH B 105 498 498 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O10 M7P . . . C 2 40.627 -31.535 0.713 1 23.79 ? O10 M7P 302 A 1 HETATM 2 P P M7P . . . C 2 39.029 -31.398 0.757 1 27.63 ? P M7P 302 A 1 HETATM 3 O O8 M7P . . . C 2 38.604 -30.838 -0.689 1 27.15 ? O8 M7P 302 A 1 HETATM 4 O O9 M7P . . . C 2 38.583 -30.506 1.852 1 26.29 ? O9 M7P 302 A 1 HETATM 5 O O7 M7P . . . C 2 38.329 -32.854 0.849 1 30.34 ? O7 M7P 302 A 1 HETATM 6 C C7 M7P . . . C 2 38.5 -33.756 -0.247 1 37.06 ? C7 M7P 302 A 1 HETATM 7 C C6 M7P . . . C 2 37.767 -35.097 -0.164 1 37.32 ? C6 M7P 302 A 1 HETATM 8 O O6 M7P . . . C 2 37.79 -35.62 1.166 1 34.89 ? O6 M7P 302 A 1 HETATM 9 C C5 M7P . . . C 2 36.319 -35.09 -0.669 1 37.4 ? C5 M7P 302 A 1 HETATM 10 O O5 M7P . . . C 2 35.436 -34.594 0.346 1 39.11 ? O5 M7P 302 A 1 HETATM 11 C C1 M7P . . . C 2 34.055 -34.907 0.082 1 40.27 ? C1 M7P 302 A 1 HETATM 12 O O1 M7P . . . C 2 33.865 -36.317 0.183 1 42.57 ? O1 M7P 302 A 1 HETATM 13 C C2 M7P . . . C 2 33.572 -34.461 -1.302 1 39.84 ? C2 M7P 302 A 1 HETATM 14 O O2 M7P . . . C 2 33.381 -33.043 -1.28 1 40.58 ? O2 M7P 302 A 1 HETATM 15 C C3 M7P . . . C 2 34.595 -34.882 -2.363 1 38.95 ? C3 M7P 302 A 1 HETATM 16 O O3 M7P . . . C 2 34.221 -34.451 -3.675 1 37.39 ? O3 M7P 302 A 1 HETATM 17 C C4 M7P . . . C 2 35.996 -34.391 -1.991 1 37.67 ? C4 M7P 302 A 1 HETATM 18 O O4 M7P . . . C 2 36.928 -34.759 -3.01 1 39.34 ? O4 M7P 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 418 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #