data_1X9J # _model_server_result.job_id RF2Ol6K48HtOVB-IxkKh7g _model_server_result.datetime_utc '2024-12-25 16:06:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":381}' # _entry.id 1X9J # _exptl.entry_id 1X9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X9J _cell.length_a 193.68 _cell.length_b 193.68 _cell.length_c 122.932 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS octameric 8 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA dimeric 2 software_defined_assembly 4 PISA dimeric 2 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 1 1 A,H,I,W,X,EA 2 1 B,C,J,K,L,Y,Z 3 1 F,G,S,T,U,V,CA,DA 4 1 D,E,M,N,O,P,Q,R,AA,BA 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 N N N ? 5 O N N ? 5 U N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O VAL 58 D VAL 58 1_555 M NA NA . D NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc2 D O TYR 63 D TYR 63 1_555 M NA NA . D NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc3 M NA NA . D NA 380 1_555 E O GLU 119 E GLU 119 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1X9J _atom_sites.fract_transf_matrix[1][1] 0.005163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008135 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 2 GOL A 1 395 395 GOL GOL . J 3 PO4 B 1 402 402 PO4 PO4 . K 2 GOL B 1 394 394 GOL GOL . L 2 GOL C 1 392 392 GOL GOL . M 4 NA D 1 380 380 NA NA . N 5 CIT D 1 381 381 CIT CIT . O 5 CIT D 1 384 384 CIT CIT . P 2 GOL D 1 393 393 GOL GOL . Q 3 PO4 E 1 401 401 PO4 PO4 . R 3 PO4 E 1 405 405 PO4 PO4 . S 3 PO4 F 1 403 403 PO4 PO4 . T 2 GOL F 1 391 391 GOL GOL . U 5 CIT G 1 382 382 CIT CIT . V 5 CIT G 1 383 383 CIT CIT . W 3 PO4 H 1 404 404 PO4 PO4 . X 6 HOH A 1 396 2 HOH HOH . X 6 HOH A 2 397 6 HOH HOH . X 6 HOH A 3 398 8 HOH HOH . X 6 HOH A 4 399 18 HOH HOH . X 6 HOH A 5 400 28 HOH HOH . X 6 HOH A 6 401 29 HOH HOH . X 6 HOH A 7 402 35 HOH HOH . X 6 HOH A 8 403 38 HOH HOH . Y 6 HOH B 1 403 9 HOH HOH . Y 6 HOH B 2 404 12 HOH HOH . Y 6 HOH B 3 405 24 HOH HOH . Y 6 HOH B 4 406 25 HOH HOH . Y 6 HOH B 5 407 30 HOH HOH . Y 6 HOH B 6 408 40 HOH HOH . Y 6 HOH B 7 409 41 HOH HOH . Z 6 HOH C 1 393 7 HOH HOH . Z 6 HOH C 2 394 14 HOH HOH . Z 6 HOH C 3 395 23 HOH HOH . Z 6 HOH C 4 396 46 HOH HOH . Z 6 HOH C 5 397 47 HOH HOH . AA 6 HOH D 1 394 4 HOH HOH . AA 6 HOH D 2 395 5 HOH HOH . AA 6 HOH D 3 396 10 HOH HOH . AA 6 HOH D 4 397 13 HOH HOH . AA 6 HOH D 5 398 17 HOH HOH . AA 6 HOH D 6 399 20 HOH HOH . AA 6 HOH D 7 400 32 HOH HOH . AA 6 HOH D 8 401 43 HOH HOH . AA 6 HOH D 9 402 44 HOH HOH . AA 6 HOH D 10 403 45 HOH HOH . BA 6 HOH E 1 406 21 HOH HOH . BA 6 HOH E 2 407 31 HOH HOH . BA 6 HOH E 3 408 34 HOH HOH . BA 6 HOH E 4 409 39 HOH HOH . CA 6 HOH F 1 404 3 HOH HOH . CA 6 HOH F 2 405 22 HOH HOH . CA 6 HOH F 3 406 36 HOH HOH . DA 6 HOH G 1 384 1 HOH HOH . DA 6 HOH G 2 385 11 HOH HOH . DA 6 HOH G 3 386 15 HOH HOH . DA 6 HOH G 4 387 19 HOH HOH . DA 6 HOH G 5 388 26 HOH HOH . DA 6 HOH G 6 389 33 HOH HOH . DA 6 HOH G 7 390 37 HOH HOH . DA 6 HOH G 8 391 42 HOH HOH . EA 6 HOH H 1 405 16 HOH HOH . EA 6 HOH H 2 406 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . N 5 -15.77 143.409 4.032 1 80.29 ? C1 CIT 381 D 1 HETATM 2 O O1 CIT . . . N 5 -15.31 142.68 4.995 1 78.72 ? O1 CIT 381 D 1 HETATM 3 O O2 CIT . . . N 5 -14.944 144.074 3.306 1 79.42 ? O2 CIT 381 D 1 HETATM 4 C C2 CIT . . . N 5 -17.321 143.397 3.844 1 80.33 ? C2 CIT 381 D 1 HETATM 5 C C3 CIT . . . N 5 -17.997 143.463 2.466 1 80.68 ? C3 CIT 381 D 1 HETATM 6 O O7 CIT . . . N 5 -19.463 143.27 2.715 1 80.75 ? O7 CIT 381 D 1 HETATM 7 C C4 CIT . . . N 5 -17.487 142.381 1.521 1 80.95 ? C4 CIT 381 D 1 HETATM 8 C C5 CIT . . . N 5 -18.459 141.615 0.697 1 81.17 ? C5 CIT 381 D 1 HETATM 9 O O3 CIT . . . N 5 -18.632 141.702 -0.504 1 80.31 ? O3 CIT 381 D 1 HETATM 10 O O4 CIT . . . N 5 -19.173 140.783 1.279 1 81.24 ? O4 CIT 381 D 1 HETATM 11 C C6 CIT . . . N 5 -17.976 144.827 1.723 1 80.63 ? C6 CIT 381 D 1 HETATM 12 O O5 CIT . . . N 5 -16.79 145.225 1.378 1 80.4 ? O5 CIT 381 D 1 HETATM 13 O O6 CIT . . . N 5 -19.052 145.474 1.43 1 80.1 ? O6 CIT 381 D 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 78 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #