data_1X9J
#
_model_server_result.job_id            -mHzfPAxGNmdqFfuqyJwAA 
_model_server_result.datetime_utc      '2024-12-25 16:06:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1x9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":394}' 
#
_entry.id    1X9J 
#
_exptl.entry_id    1X9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1X9J 
_cell.length_a            193.68 
_cell.length_b            193.68 
_cell.length_c            122.932 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1X9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS octameric 8 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
PISA dimeric 2 software_defined_assembly 3 
PISA dimeric 2 software_defined_assembly 4 
PISA dimeric 2 software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 1 1 
A,H,I,W,X,EA 2 1 
B,C,J,K,L,Y,Z 3 1 
F,G,S,T,U,V,CA,DA 4 1 
D,E,M,N,O,P,Q,R,AA,BA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 L N N 
? 2 P N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D O VAL 58 D VAL 58 1_555 M NA NA . D NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? 
metalc ? metalc2 D O TYR 63 D TYR 63 1_555 M NA NA . D NA 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? 
metalc ? metalc3 M NA NA . D NA 380 1_555 E O GLU 119 E GLU 119 4_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     1X9J 
_atom_sites.fract_transf_matrix[1][1]    0.005163 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008135 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 GOL A 1 395 395 GOL GOL . 
J 3 PO4 B 1 402 402 PO4 PO4 . 
K 2 GOL B 1 394 394 GOL GOL . 
L 2 GOL C 1 392 392 GOL GOL . 
M 4 NA D 1 380 380 NA NA . 
N 5 CIT D 1 381 381 CIT CIT . 
O 5 CIT D 1 384 384 CIT CIT . 
P 2 GOL D 1 393 393 GOL GOL . 
Q 3 PO4 E 1 401 401 PO4 PO4 . 
R 3 PO4 E 1 405 405 PO4 PO4 . 
S 3 PO4 F 1 403 403 PO4 PO4 . 
T 2 GOL F 1 391 391 GOL GOL . 
U 5 CIT G 1 382 382 CIT CIT . 
V 5 CIT G 1 383 383 CIT CIT . 
W 3 PO4 H 1 404 404 PO4 PO4 . 
X 6 HOH A 1 396 2 HOH HOH . 
X 6 HOH A 2 397 6 HOH HOH . 
X 6 HOH A 3 398 8 HOH HOH . 
X 6 HOH A 4 399 18 HOH HOH . 
X 6 HOH A 5 400 28 HOH HOH . 
X 6 HOH A 6 401 29 HOH HOH . 
X 6 HOH A 7 402 35 HOH HOH . 
X 6 HOH A 8 403 38 HOH HOH . 
Y 6 HOH B 1 403 9 HOH HOH . 
Y 6 HOH B 2 404 12 HOH HOH . 
Y 6 HOH B 3 405 24 HOH HOH . 
Y 6 HOH B 4 406 25 HOH HOH . 
Y 6 HOH B 5 407 30 HOH HOH . 
Y 6 HOH B 6 408 40 HOH HOH . 
Y 6 HOH B 7 409 41 HOH HOH . 
Z 6 HOH C 1 393 7 HOH HOH . 
Z 6 HOH C 2 394 14 HOH HOH . 
Z 6 HOH C 3 395 23 HOH HOH . 
Z 6 HOH C 4 396 46 HOH HOH . 
Z 6 HOH C 5 397 47 HOH HOH . 
AA 6 HOH D 1 394 4 HOH HOH . 
AA 6 HOH D 2 395 5 HOH HOH . 
AA 6 HOH D 3 396 10 HOH HOH . 
AA 6 HOH D 4 397 13 HOH HOH . 
AA 6 HOH D 5 398 17 HOH HOH . 
AA 6 HOH D 6 399 20 HOH HOH . 
AA 6 HOH D 7 400 32 HOH HOH . 
AA 6 HOH D 8 401 43 HOH HOH . 
AA 6 HOH D 9 402 44 HOH HOH . 
AA 6 HOH D 10 403 45 HOH HOH . 
BA 6 HOH E 1 406 21 HOH HOH . 
BA 6 HOH E 2 407 31 HOH HOH . 
BA 6 HOH E 3 408 34 HOH HOH . 
BA 6 HOH E 4 409 39 HOH HOH . 
CA 6 HOH F 1 404 3 HOH HOH . 
CA 6 HOH F 2 405 22 HOH HOH . 
CA 6 HOH F 3 406 36 HOH HOH . 
DA 6 HOH G 1 384 1 HOH HOH . 
DA 6 HOH G 2 385 11 HOH HOH . 
DA 6 HOH G 3 386 15 HOH HOH . 
DA 6 HOH G 4 387 19 HOH HOH . 
DA 6 HOH G 5 388 26 HOH HOH . 
DA 6 HOH G 6 389 33 HOH HOH . 
DA 6 HOH G 7 390 37 HOH HOH . 
DA 6 HOH G 8 391 42 HOH HOH . 
EA 6 HOH H 1 405 16 HOH HOH . 
EA 6 HOH H 2 406 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . K 2 -41.471 71.419 -2.739 1 55.64 ? C1 GOL 394 B 1 
HETATM 2 O O1 GOL . . . K 2 -42.999 71.661 -2.276 1 54.52 ? O1 GOL 394 B 1 
HETATM 3 C C2 GOL . . . K 2 -40.807 70.198 -2.754 1 55.28 ? C2 GOL 394 B 1 
HETATM 4 O O2 GOL . . . K 2 -40.8 69.737 -1.498 1 55.27 ? O2 GOL 394 B 1 
HETATM 5 C C3 GOL . . . K 2 -39.853 70.449 -3.487 1 54.51 ? C3 GOL 394 B 1 
HETATM 6 O O3 GOL . . . K 2 -38.859 71.243 -4.398 1 54.41 ? O3 GOL 394 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    54 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#