data_1X9P # _model_server_result.job_id b8NMF549pcJ2Ix7rSsiNNA _model_server_result.datetime_utc '2025-03-04 14:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x9p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 1X9P # _exptl.entry_id 1X9P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.36 _cell.angle_gamma 90 _cell.entry_id 1X9P _cell.length_a 435.984 _cell.length_b 300.168 _cell.length_c 420.621 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X9P _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 'complete icosahedral assembly' 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 ? 60-meric 60 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 (1-60) A,B,C,D 2 1 A,B,C,D 3 (1-5) A,B,C,D 4 (1,2,6,10,23,24) A,B,C,D 5 P A,B,C,D 6 (X0)(1-60) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 0.954191 -0.008163 -0.299085 -0.163981 -0.85039 -0.499947 -0.250258 0.52609 -0.812773 -46.96116 64.24156 103.11366 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.37083 0.90743 0.197628 -0.907613 0.309017 0.284162 0.196786 -0.284745 0.938187 30.92245 44.70173 -9.67161 3 'point symmetry operation' ? ? -0.64719 0.56064 0.516555 -0.561118 -0.809017 0.175038 0.516035 -0.176565 0.838172 81.04172 27.70143 -25.38887 4 'point symmetry operation' ? ? -0.64719 -0.561118 0.516035 0.56064 -0.809017 -0.176565 0.516555 0.175038 0.838172 81.09467 -27.50707 -25.43106 5 'point symmetry operation' ? ? 0.37083 -0.907613 0.196786 0.90743 0.309017 -0.284745 0.197628 0.284162 0.938187 31.00814 -44.6275 -9.73988 6 'point symmetry operation' ? ? -0.874742 -0.263317 0.406806 -0.263317 -0.446459 -0.855183 0.406806 -0.855183 0.321201 110.6886 108.49405 36.14401 7 'point symmetry operation' ? ? -0.005337 -0.990972 0.133963 0.139278 -0.133396 -0.981227 0.990239 0.013421 0.138732 67.93426 88.66517 7.38875 8 'point symmetry operation' ? ? 0.923802 -0.349215 -0.156969 -0.020372 0.364563 -0.930956 0.382329 0.863216 0.329669 22.17543 96.49902 37.26757 9 'point symmetry operation' ? ? 0.628636 0.775068 -0.063931 -0.521636 0.359255 -0.773842 -0.576813 0.519814 0.630144 36.64926 121.16949 84.48896 10 'point symmetry operation' ? ? -0.482925 0.828156 0.284501 -0.671784 -0.141985 -0.727012 -0.561685 -0.542216 0.62491 91.35341 128.58283 83.79456 11 'point symmetry operation' ? ? -0.946221 0.278895 0.163963 0.278895 0.446326 0.850301 0.163963 0.850301 -0.500105 141.22994 -109.26078 139.52524 12 'point symmetry operation' ? ? -0.571749 -0.819133 0.04608 -0.134341 0.148881 0.979687 -0.809355 0.553945 -0.195166 122.85176 -88.90891 187.44212 13 'point symmetry operation' ? ? 0.540502 -0.78507 -0.302528 0.007845 -0.354859 0.934887 -0.841306 -0.507682 -0.185643 68.10952 -95.88298 189.06475 14 'point symmetry operation' ? ? 0.85344 0.334011 -0.400097 0.508957 -0.368743 0.777812 0.112265 -0.867448 -0.484697 52.65514 -120.54506 142.15072 15 'point symmetry operation' ? ? -0.065406 0.991577 -0.111789 0.676475 0.126417 0.725535 0.733556 -0.028168 -0.679045 97.84604 -128.813 111.53362 16 'point symmetry operation' ? ? 0.820962 -0.015578 -0.57077 -0.015578 -0.999867 0.004883 -0.57077 0.004883 -0.821096 72.6788 0.76666 231.85086 17 'point symmetry operation' ? ? 0.206256 0.902676 -0.377671 0.902676 -0.324502 -0.282621 -0.377671 -0.282621 -0.881754 102.88887 -44.45806 222.36086 18 'point symmetry operation' ? ? -0.817114 0.573645 -0.057058 0.573645 0.799313 -0.178969 -0.057058 -0.178969 -0.982199 153.27067 -28.31753 206.57667 19 'point symmetry operation' ? ? -0.834886 -0.547961 -0.052007 -0.547961 0.818505 0.172596 -0.052007 0.172596 -0.983619 154.19827 26.88258 206.31151 20 'point symmetry operation' ? ? 0.177501 -0.912121 -0.369499 -0.912121 -0.293449 0.286223 -0.369499 0.286223 -0.884052 104.38976 44.8576 221.93182 21 'point symmetry operation' ? ? -0.354226 0.716146 -0.601381 -0.89566 -0.444734 -0.002043 -0.268918 0.537909 0.79896 171.16324 72.89038 42.30452 22 'point symmetry operation' ? ? -0.899684 0.071107 -0.430712 0.071107 -0.949597 -0.305301 -0.430712 -0.305301 0.849281 198.03901 25.33374 50.30717 23 'point symmetry operation' ? ? -0.482925 -0.671784 -0.561685 0.828156 -0.141985 -0.542216 0.284501 -0.727012 0.62491 177.56285 -11.96336 15.12711 24 'point symmetry operation' ? ? 0.320104 -0.485876 -0.8133 0.329271 0.862011 -0.38538 0.888321 -0.144434 0.435919 138.03212 12.5424 -14.61801 25 'point symmetry operation' ? ? 0.399645 0.371911 -0.837834 -0.736106 0.674901 -0.051535 0.546289 0.63733 0.543487 134.07694 64.9849 2.17855 26 'point symmetry operation' ? ? -0.123363 0.287835 -0.949701 0.899746 0.436145 0.015313 0.418615 -0.852601 -0.312782 187.91576 -74.57386 99.77594 27 'point symmetry operation' ? ? -0.493877 0.247426 -0.833586 -0.059185 0.946872 0.316117 0.867515 0.205459 -0.452995 206.15294 -27.40316 77.63291 28 'point symmetry operation' ? ? -0.571749 -0.134341 -0.809355 -0.819133 0.148881 0.553945 0.04608 0.979687 -0.195166 210.00351 10.03617 118.02416 29 'point symmetry operation' ? ? -0.249362 -0.329876 -0.910494 -0.329876 -0.855032 0.400127 -0.910494 0.400127 0.104394 194.14611 -13.99575 165.13035 30 'point symmetry operation' ? ? 0.027756 -0.068957 -0.997233 0.73245 -0.677493 0.067234 -0.680255 -0.732289 0.031703 180.49514 -66.28762 153.85233 31 'point symmetry operation' ? ? 0.4363 -0.290512 0.851613 0.723123 -0.450029 -0.523991 0.535476 0.844439 0.013728 -41.01852 -5.29676 57.02789 32 'point symmetry operation' ? ? 0.593051 0.063646 0.802645 0.573493 0.666321 -0.476574 -0.565151 0.742944 0.358662 -48.7499 2.01477 111.20123 33 'point symmetry operation' ? ? 0.320104 0.329271 0.888321 -0.485876 0.862011 -0.144434 -0.8133 -0.38538 0.435919 -35.32907 54.14351 123.46741 34 'point symmetry operation' ? ? -0.005337 0.139278 0.990239 -0.990972 -0.133396 0.013421 0.133963 -0.981227 0.138732 -19.30317 79.04932 76.87498 35 'point symmetry operation' ? ? 0.066476 -0.243769 0.967552 -0.243769 -0.944281 -0.221158 0.967552 -0.221158 -0.122196 -22.81944 42.31321 35.8131 36 'point symmetry operation' ? ? 0.041288 -0.713469 0.69947 -0.727209 0.458618 0.510722 -0.685173 -0.529747 -0.499906 6.53686 6.98017 208.41177 37 'point symmetry operation' ? ? 0.80051 -0.382179 0.461652 -0.585415 -0.663596 0.465758 0.128348 -0.643102 -0.754948 -30.8447 0.05458 168.3788 38 'point symmetry operation' ? ? 0.73457 0.476854 0.482719 0.476854 -0.868907 0.132705 0.482719 0.132705 -0.865663 -27.63994 -52.21639 150.90144 39 'point symmetry operation' ? ? -0.065406 0.676475 0.733556 0.991577 0.126417 -0.028168 -0.111789 0.725535 -0.679045 11.72228 -77.59604 180.1328 40 'point symmetry operation' ? ? -0.493877 -0.059185 0.867515 0.247426 0.946872 0.205459 -0.833586 0.316117 -0.452995 32.84471 -41.01056 215.67613 41 'point symmetry operation' ? ? -0.354226 -0.89566 -0.268918 0.716146 -0.444734 0.537909 -0.601381 -0.002043 0.79896 137.29186 -112.91702 69.28367 42 'point symmetry operation' ? ? 0.628636 -0.521636 -0.576813 0.775068 0.359255 0.519814 -0.063931 -0.773842 0.630144 88.90164 -115.85487 42.86892 43 'point symmetry operation' ? ? 0.593051 0.573493 -0.565151 0.063646 0.666321 0.742944 0.802645 -0.476574 0.358662 90.60127 -80.856 0.20542 44 'point symmetry operation' ? ? -0.411802 0.876296 -0.25005 -0.434958 0.05211 0.898942 0.800769 0.478948 0.359693 140.04192 -56.28767 0.25268 45 'point symmetry operation' ? ? -0.997252 -0.031691 -0.066967 -0.031691 -0.63456 0.772223 -0.066967 0.772223 0.631812 168.8983 -76.10246 42.94538 46 'point symmetry operation' ? ? 0.4363 0.723123 0.535476 -0.290512 -0.450029 0.844439 0.851613 -0.523991 0.013728 -8.81046 -62.45663 31.37356 47 'point symmetry operation' ? ? -0.389148 0.466895 0.794086 0.466895 -0.643135 0.606948 0.794086 0.606948 0.032284 31.82698 -99.72412 34.15143 48 'point symmetry operation' ? ? -0.411802 -0.434958 0.800769 0.876296 0.05211 0.478948 -0.25005 0.898942 0.359693 32.9845 -119.90601 85.52589 49 'point symmetry operation' ? ? 0.399645 -0.736106 0.546289 0.371911 0.674901 0.63733 -0.837834 -0.051535 0.543487 -6.93754 -95.1116 114.49918 50 'point symmetry operation' ? ? 0.923802 -0.020372 0.382329 -0.349215 0.364563 0.863216 -0.156969 -0.930956 0.329669 -32.76825 -59.60594 81.0312 51 'point symmetry operation' ? ? 0.041288 -0.727209 -0.685173 -0.713469 0.458618 -0.529747 0.69947 0.510722 -0.499906 147.6043 111.86817 96.04895 52 'point symmetry operation' ? ? 0.540502 0.007845 -0.841306 -0.78507 -0.354859 -0.507682 -0.302528 0.934887 -0.185643 123.00025 115.43048 145.34331 53 'point symmetry operation' ? ? 0.027756 0.73245 -0.680255 -0.068957 -0.677493 -0.732289 -0.997233 0.067234 0.031703 148.20139 80.20148 179.57492 54 'point symmetry operation' ? ? -0.788353 0.445225 -0.424587 0.445225 -0.063415 -0.89317 -0.424587 -0.89317 -0.148232 188.38061 54.86645 151.43687 55 'point symmetry operation' ? ? -0.77999 -0.456893 -0.427627 0.046895 0.63874 -0.767992 0.624033 -0.61908 -0.476784 188.01158 74.43754 99.81498 56 'point symmetry operation' ? ? -0.123363 0.899746 0.418615 0.287835 0.436145 -0.852601 -0.949701 0.015313 -0.312782 48.51164 63.50541 210.81394 57 'point symmetry operation' ? ? -0.77999 0.046895 0.624033 -0.456893 0.63874 -0.61908 -0.427627 -0.767992 -0.476784 80.86848 100.14844 185.15645 58 'point symmetry operation' ? ? -0.209005 -0.870985 0.444638 -0.870985 -0.040937 -0.489602 0.444638 -0.489602 -0.750058 52.81018 120.56046 142.21388 59 'point symmetry operation' ? ? 0.80051 -0.585415 0.128348 -0.382179 -0.663596 -0.643102 0.461652 0.465758 -0.754948 3.11236 96.53275 141.33139 60 'point symmetry operation' ? ? 0.85344 0.508957 0.112265 0.334011 -0.368743 -0.867448 -0.400097 0.777812 -0.484697 0.45571 61.27079 183.72856 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 347 n n S O2 SO4 doub 348 n n S O3 SO4 sing 349 n n S O4 SO4 sing 350 n n # _atom_sites.entry_id 1X9P _atom_sites.fract_transf_matrix[1][1] 0.002294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000587 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003331 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 700 700 SO4 SO4 . C 3 C15 A 1 998 998 C15 C15 . D 3 C15 A 1 999 999 C15 C15 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 43.395 32.12 39.742 1 166.22 ? S SO4 700 A 1 HETATM 2 O O1 SO4 . . . B 2 41.991 32.888 40.047 1 166.18 ? O1 SO4 700 A 1 HETATM 3 O O2 SO4 . . . B 2 44.369 32.724 38.843 1 166.03 ? O2 SO4 700 A 1 HETATM 4 O O3 SO4 . . . B 2 43.796 31.21 40.606 1 166.25 ? O3 SO4 700 A 1 HETATM 5 O O4 SO4 . . . B 2 43.812 33.183 40.64 1 166.46 ? O4 SO4 700 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #