data_1X9U # _model_server_result.job_id U3dzWn_1CYqx04b8v8_APg _model_server_result.datetime_utc '2025-09-01 04:03:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x9u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":116}' # _entry.id 1X9U # _exptl.entry_id 1X9U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1X9U _cell.length_a 92.65 _cell.length_b 92.65 _cell.length_c 47.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X9U _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 57 1_555 A SG CYS 92 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 58 B CYS 57 1_555 B SG CYS 92 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc1 A ND1 HIS 45 A HIS 44 1_555 C CU CU . A CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc2 A SG CYS 86 A CYS 85 1_555 C CU CU . A CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc3 A ND1 HIS 91 A HIS 90 1_555 C CU CU . A CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 A OE1 GLN 96 A GLN 95 1_555 C CU CU . A CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 B ND1 HIS 45 B HIS 44 1_555 D CU CU . B CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc6 B SG CYS 86 B CYS 85 1_555 D CU CU . B CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc7 B ND1 HIS 91 B HIS 90 1_555 D CU CU . B CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc8 B OE1 GLN 96 B GLN 95 1_555 D CU CU . B CU 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1X9U _atom_sites.fract_transf_matrix[1][1] 0.010793 _atom_sites.fract_transf_matrix[1][2] 0.006232 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012463 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020964 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 116 105 CU CU . D 2 CU B 1 116 105 CU CU . E 3 HOH A 1 117 2 HOH HOH . E 3 HOH A 2 118 3 HOH HOH . E 3 HOH A 3 119 4 HOH HOH . E 3 HOH A 4 120 6 HOH HOH . E 3 HOH A 5 121 10 HOH HOH . E 3 HOH A 6 122 11 HOH HOH . E 3 HOH A 7 123 15 HOH HOH . E 3 HOH A 8 124 16 HOH HOH . E 3 HOH A 9 125 17 HOH HOH . E 3 HOH A 10 126 18 HOH HOH . E 3 HOH A 11 127 19 HOH HOH . E 3 HOH A 12 128 20 HOH HOH . E 3 HOH A 13 129 21 HOH HOH . E 3 HOH A 14 130 22 HOH HOH . E 3 HOH A 15 131 25 HOH HOH . E 3 HOH A 16 132 29 HOH HOH . E 3 HOH A 17 133 31 HOH HOH . E 3 HOH A 18 134 33 HOH HOH . E 3 HOH A 19 135 35 HOH HOH . E 3 HOH A 20 136 37 HOH HOH . E 3 HOH A 21 137 38 HOH HOH . E 3 HOH A 22 138 39 HOH HOH . E 3 HOH A 23 139 40 HOH HOH . E 3 HOH A 24 140 42 HOH HOH . E 3 HOH A 25 141 43 HOH HOH . E 3 HOH A 26 142 44 HOH HOH . E 3 HOH A 27 143 45 HOH HOH . E 3 HOH A 28 144 48 HOH HOH . E 3 HOH A 29 145 49 HOH HOH . E 3 HOH A 30 146 50 HOH HOH . E 3 HOH A 31 147 52 HOH HOH . E 3 HOH A 32 148 54 HOH HOH . E 3 HOH A 33 149 55 HOH HOH . E 3 HOH A 34 150 57 HOH HOH . E 3 HOH A 35 151 58 HOH HOH . E 3 HOH A 36 152 60 HOH HOH . E 3 HOH A 37 153 61 HOH HOH . E 3 HOH A 38 154 64 HOH HOH . E 3 HOH A 39 155 65 HOH HOH . E 3 HOH A 40 156 69 HOH HOH . E 3 HOH A 41 157 72 HOH HOH . E 3 HOH A 42 158 76 HOH HOH . E 3 HOH A 43 159 79 HOH HOH . E 3 HOH A 44 160 80 HOH HOH . E 3 HOH A 45 161 81 HOH HOH . E 3 HOH A 46 162 85 HOH HOH . E 3 HOH A 47 163 90 HOH HOH . E 3 HOH A 48 164 98 HOH HOH . E 3 HOH A 49 165 106 HOH HOH . E 3 HOH A 50 166 107 HOH HOH . E 3 HOH A 51 167 111 HOH HOH . E 3 HOH A 52 168 112 HOH HOH . E 3 HOH A 53 169 113 HOH HOH . E 3 HOH A 54 170 117 HOH HOH . E 3 HOH A 55 171 118 HOH HOH . E 3 HOH A 56 172 119 HOH HOH . E 3 HOH A 57 173 120 HOH HOH . E 3 HOH A 58 174 123 HOH HOH . E 3 HOH A 59 175 125 HOH HOH . E 3 HOH A 60 176 127 HOH HOH . E 3 HOH A 61 177 128 HOH HOH . E 3 HOH A 62 178 129 HOH HOH . E 3 HOH A 63 179 130 HOH HOH . E 3 HOH A 64 180 131 HOH HOH . E 3 HOH A 65 181 133 HOH HOH . E 3 HOH A 66 182 134 HOH HOH . E 3 HOH A 67 183 135 HOH HOH . E 3 HOH A 68 184 136 HOH HOH . E 3 HOH A 69 185 137 HOH HOH . E 3 HOH A 70 186 142 HOH HOH . E 3 HOH A 71 187 143 HOH HOH . E 3 HOH A 72 188 144 HOH HOH . E 3 HOH A 73 189 147 HOH HOH . E 3 HOH A 74 190 149 HOH HOH . E 3 HOH A 75 191 151 HOH HOH . E 3 HOH A 76 192 153 HOH HOH . E 3 HOH A 77 193 154 HOH HOH . E 3 HOH A 78 194 156 HOH HOH . E 3 HOH A 79 195 158 HOH HOH . E 3 HOH A 80 196 161 HOH HOH . E 3 HOH A 81 197 163 HOH HOH . E 3 HOH A 82 198 164 HOH HOH . E 3 HOH A 83 199 168 HOH HOH . E 3 HOH A 84 200 169 HOH HOH . E 3 HOH A 85 201 172 HOH HOH . E 3 HOH A 86 202 175 HOH HOH . E 3 HOH A 87 203 177 HOH HOH . E 3 HOH A 88 204 178 HOH HOH . E 3 HOH A 89 205 182 HOH HOH . E 3 HOH A 90 206 184 HOH HOH . E 3 HOH A 91 207 185 HOH HOH . E 3 HOH A 92 208 186 HOH HOH . E 3 HOH A 93 209 187 HOH HOH . E 3 HOH A 94 210 189 HOH HOH . E 3 HOH A 95 211 191 HOH HOH . E 3 HOH A 96 212 192 HOH HOH . E 3 HOH A 97 213 195 HOH HOH . E 3 HOH A 98 214 196 HOH HOH . E 3 HOH A 99 215 202 HOH HOH . E 3 HOH A 100 216 203 HOH HOH . E 3 HOH A 101 217 204 HOH HOH . E 3 HOH A 102 218 205 HOH HOH . E 3 HOH A 103 219 207 HOH HOH . E 3 HOH A 104 220 208 HOH HOH . E 3 HOH A 105 221 209 HOH HOH . E 3 HOH A 106 222 210 HOH HOH . E 3 HOH A 107 223 211 HOH HOH . E 3 HOH A 108 224 214 HOH HOH . E 3 HOH A 109 225 215 HOH HOH . F 3 HOH B 1 117 1 HOH HOH . F 3 HOH B 2 118 5 HOH HOH . F 3 HOH B 3 119 7 HOH HOH . F 3 HOH B 4 120 8 HOH HOH . F 3 HOH B 5 121 9 HOH HOH . F 3 HOH B 6 122 12 HOH HOH . F 3 HOH B 7 123 13 HOH HOH . F 3 HOH B 8 124 14 HOH HOH . F 3 HOH B 9 125 23 HOH HOH . F 3 HOH B 10 126 24 HOH HOH . F 3 HOH B 11 127 26 HOH HOH . F 3 HOH B 12 128 27 HOH HOH . F 3 HOH B 13 129 28 HOH HOH . F 3 HOH B 14 130 30 HOH HOH . F 3 HOH B 15 131 32 HOH HOH . F 3 HOH B 16 132 34 HOH HOH . F 3 HOH B 17 133 36 HOH HOH . F 3 HOH B 18 134 41 HOH HOH . F 3 HOH B 19 135 46 HOH HOH . F 3 HOH B 20 136 47 HOH HOH . F 3 HOH B 21 137 51 HOH HOH . F 3 HOH B 22 138 53 HOH HOH . F 3 HOH B 23 139 56 HOH HOH . F 3 HOH B 24 140 59 HOH HOH . F 3 HOH B 25 141 62 HOH HOH . F 3 HOH B 26 142 63 HOH HOH . F 3 HOH B 27 143 66 HOH HOH . F 3 HOH B 28 144 67 HOH HOH . F 3 HOH B 29 145 68 HOH HOH . F 3 HOH B 30 146 70 HOH HOH . F 3 HOH B 31 147 71 HOH HOH . F 3 HOH B 32 148 73 HOH HOH . F 3 HOH B 33 149 74 HOH HOH . F 3 HOH B 34 150 75 HOH HOH . F 3 HOH B 35 151 77 HOH HOH . F 3 HOH B 36 152 78 HOH HOH . F 3 HOH B 37 153 82 HOH HOH . F 3 HOH B 38 154 83 HOH HOH . F 3 HOH B 39 155 84 HOH HOH . F 3 HOH B 40 156 86 HOH HOH . F 3 HOH B 41 157 87 HOH HOH . F 3 HOH B 42 158 88 HOH HOH . F 3 HOH B 43 159 89 HOH HOH . F 3 HOH B 44 160 91 HOH HOH . F 3 HOH B 45 161 92 HOH HOH . F 3 HOH B 46 162 93 HOH HOH . F 3 HOH B 47 163 94 HOH HOH . F 3 HOH B 48 164 95 HOH HOH . F 3 HOH B 49 165 96 HOH HOH . F 3 HOH B 50 166 97 HOH HOH . F 3 HOH B 51 167 99 HOH HOH . F 3 HOH B 52 168 100 HOH HOH . F 3 HOH B 53 169 101 HOH HOH . F 3 HOH B 54 170 102 HOH HOH . F 3 HOH B 55 171 103 HOH HOH . F 3 HOH B 56 172 104 HOH HOH . F 3 HOH B 57 173 105 HOH HOH . F 3 HOH B 58 174 108 HOH HOH . F 3 HOH B 59 175 109 HOH HOH . F 3 HOH B 60 176 110 HOH HOH . F 3 HOH B 61 177 114 HOH HOH . F 3 HOH B 62 178 115 HOH HOH . F 3 HOH B 63 179 116 HOH HOH . F 3 HOH B 64 180 121 HOH HOH . F 3 HOH B 65 181 122 HOH HOH . F 3 HOH B 66 182 124 HOH HOH . F 3 HOH B 67 183 126 HOH HOH . F 3 HOH B 68 184 132 HOH HOH . F 3 HOH B 69 185 138 HOH HOH . F 3 HOH B 70 186 139 HOH HOH . F 3 HOH B 71 187 140 HOH HOH . F 3 HOH B 72 188 141 HOH HOH . F 3 HOH B 73 189 145 HOH HOH . F 3 HOH B 74 190 146 HOH HOH . F 3 HOH B 75 191 148 HOH HOH . F 3 HOH B 76 192 150 HOH HOH . F 3 HOH B 77 193 152 HOH HOH . F 3 HOH B 78 194 155 HOH HOH . F 3 HOH B 79 195 157 HOH HOH . F 3 HOH B 80 196 159 HOH HOH . F 3 HOH B 81 197 160 HOH HOH . F 3 HOH B 82 198 162 HOH HOH . F 3 HOH B 83 199 165 HOH HOH . F 3 HOH B 84 200 166 HOH HOH . F 3 HOH B 85 201 167 HOH HOH . F 3 HOH B 86 202 170 HOH HOH . F 3 HOH B 87 203 171 HOH HOH . F 3 HOH B 88 204 173 HOH HOH . F 3 HOH B 89 205 174 HOH HOH . F 3 HOH B 90 206 176 HOH HOH . F 3 HOH B 91 207 179 HOH HOH . F 3 HOH B 92 208 180 HOH HOH . F 3 HOH B 93 209 181 HOH HOH . F 3 HOH B 94 210 183 HOH HOH . F 3 HOH B 95 211 188 HOH HOH . F 3 HOH B 96 212 190 HOH HOH . F 3 HOH B 97 213 193 HOH HOH . F 3 HOH B 98 214 194 HOH HOH . F 3 HOH B 99 215 197 HOH HOH . F 3 HOH B 100 216 198 HOH HOH . F 3 HOH B 101 217 199 HOH HOH . F 3 HOH B 102 218 200 HOH HOH . F 3 HOH B 103 219 201 HOH HOH . F 3 HOH B 104 220 206 HOH HOH . F 3 HOH B 105 221 212 HOH HOH . F 3 HOH B 106 222 213 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.926 _atom_site.Cartn_y 33.844 _atom_site.Cartn_z 18.096 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 116 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #