data_1X9W # _model_server_result.job_id d3d2vgnhdcUQ8DHqORNnxg _model_server_result.datetime_utc '2024-11-24 19:59:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1x9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":3001}' # _entry.id 1X9W # _exptl.entry_id 1X9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1X9W _cell.length_a 105.944 _cell.length_b 213.559 _cell.length_c 52.168 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1X9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DA 21 C DA 21 1_555 A P 2DT 22 C 2DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.607 ? metalc ? metalc1 C OD1 ASP 5 A ASP 5 1_555 E MG MG . A MG 3001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc2 E MG MG . A MG 3001 1_555 H O HOH . A HOH 4013 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? hydrog 'DG-DC PAIR' hydrog1 A N1 DG 12 C DG 12 1_555 B N3 DC 15 D DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DC PAIR' hydrog2 A O6 DG 13 C DG 13 1_555 B N4 DC 14 D DC 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A N3 DT 14 C DT 14 1_555 B N1 DA 13 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A O4 DT 14 C DT 14 1_555 B N6 DA 13 D DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N1 DA 15 C DA 15 1_555 B N3 DT 12 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N6 DA 15 C DA 15 1_555 B O4 DT 12 D DT 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 16 C DG 16 1_555 B N3 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 16 C DG 16 1_555 B O2 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 16 C DG 16 1_555 B N4 DC 11 D DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 17 C DT 17 1_555 B N1 DA 10 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 17 C DT 17 1_555 B N6 DA 10 D DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DG 18 C DG 18 1_555 B N3 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 DG 18 C DG 18 1_555 B O2 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 DG 18 C DG 18 1_555 B N4 DC 9 D DC 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 19 C DT 19 1_555 B N1 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 19 C DT 19 1_555 B N6 DA 8 D DA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 20 C DG 20 1_555 B N3 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 20 C DG 20 1_555 B O2 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 20 C DG 20 1_555 B N4 DC 7 D DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 21 C DA 21 1_555 B N3 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 21 C DA 21 1_555 B O4 DT 6 D DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 2DT 22 C 2DT 22 1_555 B N1 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 2DT 22 C 2DT 22 1_555 B N6 DA 5 D DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1X9W _atom_sites.fract_transf_matrix[1][1] 0.009439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019169 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 3001 3001 MG MG . F 6 HOH C 1 4041 4041 HOH HOH . F 6 HOH C 2 4049 4049 HOH HOH . F 6 HOH C 3 4111 4111 HOH HOH . F 6 HOH C 4 4118 4118 HOH HOH . G 6 HOH D 1 4087 4087 HOH HOH . G 6 HOH D 2 4098 4098 HOH HOH . G 6 HOH D 3 4103 4103 HOH HOH . G 6 HOH D 4 4105 4105 HOH HOH . G 6 HOH D 5 4107 4107 HOH HOH . G 6 HOH D 6 4113 4113 HOH HOH . H 6 HOH A 1 4001 4001 HOH HOH . H 6 HOH A 2 4002 4002 HOH HOH . H 6 HOH A 3 4003 4003 HOH HOH . H 6 HOH A 4 4004 4004 HOH HOH . H 6 HOH A 5 4005 4005 HOH HOH . H 6 HOH A 6 4006 4006 HOH HOH . H 6 HOH A 7 4007 4007 HOH HOH . H 6 HOH A 8 4008 4008 HOH HOH . H 6 HOH A 9 4010 4010 HOH HOH . H 6 HOH A 10 4011 4011 HOH HOH . H 6 HOH A 11 4012 4012 HOH HOH . H 6 HOH A 12 4013 4013 HOH HOH . H 6 HOH A 13 4014 4014 HOH HOH . H 6 HOH A 14 4015 4015 HOH HOH . H 6 HOH A 15 4016 4016 HOH HOH . H 6 HOH A 16 4017 4017 HOH HOH . H 6 HOH A 17 4018 4018 HOH HOH . H 6 HOH A 18 4019 4019 HOH HOH . H 6 HOH A 19 4020 4020 HOH HOH . H 6 HOH A 20 4021 4021 HOH HOH . H 6 HOH A 21 4023 4023 HOH HOH . H 6 HOH A 22 4024 4024 HOH HOH . H 6 HOH A 23 4025 4025 HOH HOH . H 6 HOH A 24 4026 4026 HOH HOH . H 6 HOH A 25 4027 4027 HOH HOH . H 6 HOH A 26 4028 4028 HOH HOH . H 6 HOH A 27 4029 4029 HOH HOH . H 6 HOH A 28 4030 4030 HOH HOH . H 6 HOH A 29 4031 4031 HOH HOH . H 6 HOH A 30 4032 4032 HOH HOH . H 6 HOH A 31 4033 4033 HOH HOH . H 6 HOH A 32 4034 4034 HOH HOH . H 6 HOH A 33 4035 4035 HOH HOH . H 6 HOH A 34 4036 4036 HOH HOH . H 6 HOH A 35 4037 4037 HOH HOH . H 6 HOH A 36 4039 4039 HOH HOH . H 6 HOH A 37 4040 4040 HOH HOH . H 6 HOH A 38 4042 4042 HOH HOH . H 6 HOH A 39 4043 4043 HOH HOH . H 6 HOH A 40 4045 4045 HOH HOH . H 6 HOH A 41 4047 4047 HOH HOH . H 6 HOH A 42 4048 4048 HOH HOH . H 6 HOH A 43 4050 4050 HOH HOH . H 6 HOH A 44 4051 4051 HOH HOH . H 6 HOH A 45 4052 4052 HOH HOH . H 6 HOH A 46 4053 4053 HOH HOH . H 6 HOH A 47 4054 4054 HOH HOH . H 6 HOH A 48 4055 4055 HOH HOH . H 6 HOH A 49 4056 4056 HOH HOH . H 6 HOH A 50 4057 4057 HOH HOH . H 6 HOH A 51 4058 4058 HOH HOH . H 6 HOH A 52 4059 4059 HOH HOH . H 6 HOH A 53 4060 4060 HOH HOH . H 6 HOH A 54 4061 4061 HOH HOH . H 6 HOH A 55 4062 4062 HOH HOH . H 6 HOH A 56 4063 4063 HOH HOH . H 6 HOH A 57 4064 4064 HOH HOH . H 6 HOH A 58 4065 4065 HOH HOH . H 6 HOH A 59 4067 4067 HOH HOH . H 6 HOH A 60 4068 4068 HOH HOH . H 6 HOH A 61 4069 4069 HOH HOH . H 6 HOH A 62 4070 4070 HOH HOH . H 6 HOH A 63 4071 4071 HOH HOH . H 6 HOH A 64 4073 4073 HOH HOH . H 6 HOH A 65 4074 4074 HOH HOH . H 6 HOH A 66 4075 4075 HOH HOH . H 6 HOH A 67 4076 4076 HOH HOH . H 6 HOH A 68 4077 4077 HOH HOH . H 6 HOH A 69 4078 4078 HOH HOH . H 6 HOH A 70 4079 4079 HOH HOH . H 6 HOH A 71 4080 4080 HOH HOH . H 6 HOH A 72 4081 4081 HOH HOH . H 6 HOH A 73 4082 4082 HOH HOH . H 6 HOH A 74 4084 4084 HOH HOH . H 6 HOH A 75 4085 4085 HOH HOH . H 6 HOH A 76 4086 4086 HOH HOH . H 6 HOH A 77 4088 4088 HOH HOH . H 6 HOH A 78 4090 4090 HOH HOH . H 6 HOH A 79 4091 4091 HOH HOH . H 6 HOH A 80 4092 4092 HOH HOH . H 6 HOH A 81 4093 4093 HOH HOH . H 6 HOH A 82 4094 4094 HOH HOH . H 6 HOH A 83 4095 4095 HOH HOH . H 6 HOH A 84 4096 4096 HOH HOH . H 6 HOH A 85 4097 4097 HOH HOH . H 6 HOH A 86 4099 4099 HOH HOH . H 6 HOH A 87 4100 4100 HOH HOH . H 6 HOH A 88 4102 4102 HOH HOH . H 6 HOH A 89 4104 4104 HOH HOH . H 6 HOH A 90 4106 4106 HOH HOH . H 6 HOH A 91 4108 4108 HOH HOH . H 6 HOH A 92 4109 4109 HOH HOH . H 6 HOH A 93 4110 4110 HOH HOH . H 6 HOH A 94 4112 4112 HOH HOH . H 6 HOH A 95 4114 4114 HOH HOH . H 6 HOH A 96 4115 4115 HOH HOH . H 6 HOH A 97 4116 4116 HOH HOH . H 6 HOH A 98 4117 4117 HOH HOH . H 6 HOH A 99 4119 4119 HOH HOH . H 6 HOH A 100 4121 4121 HOH HOH . H 6 HOH A 101 4122 4122 HOH HOH . H 6 HOH A 102 4123 4123 HOH HOH . H 6 HOH A 103 4124 4124 HOH HOH . I 6 HOH B 1 4038 4038 HOH HOH . I 6 HOH B 2 4066 4066 HOH HOH . I 6 HOH B 3 4083 4083 HOH HOH . I 6 HOH B 4 4089 4089 HOH HOH . I 6 HOH B 5 4101 4101 HOH HOH . I 6 HOH B 6 4120 4120 HOH HOH . I 6 HOH B 7 4125 4125 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x 78.005 _atom_site.Cartn_y 23.47 _atom_site.Cartn_z 7.532 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 54.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 3001 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 1083 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #