data_1XA7 # _model_server_result.job_id Kx4Wfo4-v0kYCrR6e9Mpbg _model_server_result.datetime_utc '2024-11-22 18:55:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xa7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1XA7 # _exptl.entry_id 1XA7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 336.406 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OPEN FORM - PENICILLIN G' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XA7 _cell.length_a 88.386 _cell.length_b 88.386 _cell.length_c 125.06 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XA7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 34 A VAL 34 1_555 A N MSE 35 A MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 35 A MSE 35 1_555 A N TYR 36 A TYR 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C SER 37 A SER 37 1_555 A N MSE 38 A MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale4 A C MSE 38 A MSE 38 1_555 A N LYS 39 A LYS 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A OG SER 59 A SER 59 1_555 C C7 PNM . A PNM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 sing covale ? covale6 A C ALA 66 A ALA 66 1_555 A N MSE 67 A MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 67 A MSE 67 1_555 A N PHE 68 A PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C ARG 81 A ARG 81 1_555 A N MSE 82 A MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 A C MSE 82 A MSE 82 1_555 A N SER 83 A SER 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C ALA 103 A ALA 103 1_555 A N MSE 104 A MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale11 A C MSE 104 A MSE 104 1_555 A N GLN 105 A GLN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale12 A C TRP 145 A TRP 145 1_555 A N MSE 146 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale13 A C MSE 146 A MSE 146 1_555 A N GLU 147 A GLU 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale14 A C ASN 163 A ASN 163 1_555 A N MSE 164 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale15 A C MSE 164 A MSE 164 1_555 A N MSE 165 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale16 A C MSE 165 A MSE 165 1_555 A N GLU 166 A GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale17 A C GLU 248 A GLU 248 1_555 A N MSE 249 A MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale18 A C MSE 249 A MSE 249 1_555 A N GLY 250 A GLY 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale19 B C VAL 34 B VAL 34 1_555 B N MSE 35 B MSE 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale20 B C MSE 35 B MSE 35 1_555 B N TYR 36 B TYR 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale21 B C SER 37 B SER 37 1_555 B N MSE 38 B MSE 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale22 B OG SER 59 B SER 59 1_555 D C7 PNM . B PNM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 sing covale ? covale23 B C ALA 66 B ALA 66 1_555 B N MSE 67 B MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale24 B C MSE 67 B MSE 67 1_555 B N PHE 68 B PHE 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale25 B C ARG 81 B ARG 81 1_555 B N MSE 82 B MSE 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 B C MSE 82 B MSE 82 1_555 B N SER 83 B SER 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale27 B C ALA 103 B ALA 103 1_555 B N MSE 104 B MSE 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale28 B C MSE 104 B MSE 104 1_555 B N GLN 105 B GLN 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale29 B C TRP 145 B TRP 145 1_555 B N MSE 146 B MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale30 B C MSE 146 B MSE 146 1_555 B N GLU 147 B GLU 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale31 B C ASN 163 B ASN 163 1_555 B N MSE 164 B MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale32 B C MSE 164 B MSE 164 1_555 B N MSE 165 B MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale33 B C MSE 165 B MSE 165 1_555 B N GLU 166 B GLU 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale34 B C GLU 248 B GLU 248 1_555 B N MSE 249 B MSE 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale35 B C MSE 249 B MSE 249 1_555 B N GLY 250 B GLY 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C16 H20 N2 O4 S' _chem_comp.formula_weight 336.406 _chem_comp.id PNM _chem_comp.mon_nstd_flag . _chem_comp.name 'OPEN FORM - PENICILLIN G' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O8 C7 PNM doub 247 n n C7 C6 PNM sing 248 n n C7 HC7 PNM sing 249 n n N4 C3 PNM sing 250 n n N4 C5 PNM sing 251 n n N4 H4 PNM sing 252 n n C3 C11 PNM sing 253 n n C3 C2 PNM sing 254 n n C3 HC3 PNM sing 255 n n C11 O13 PNM sing 256 n n C11 O12 PNM doub 257 n n O13 HXT PNM sing 258 n n C2 C10 PNM sing 259 n n C2 C9 PNM sing 260 n n C2 S1 PNM sing 261 n n C10 H101 PNM sing 262 n n C10 H102 PNM sing 263 n n C10 H103 PNM sing 264 n n C9 HC91 PNM sing 265 n n C9 HC92 PNM sing 266 n n C9 HC93 PNM sing 267 n n S1 C5 PNM sing 268 n n C5 C6 PNM sing 269 n n C5 HC5 PNM sing 270 n n C6 N14 PNM sing 271 n n C6 HC6 PNM sing 272 n n N14 C15 PNM sing 273 n n N14 H14 PNM sing 274 n n C15 O16 PNM doub 275 n n C15 C17 PNM sing 276 n n C17 C18 PNM sing 277 n n C17 H171 PNM sing 278 n n C17 H172 PNM sing 279 n n C18 C19 PNM doub 280 n y C18 C23 PNM sing 281 n y C19 C20 PNM sing 282 n y C19 H19 PNM sing 283 n n C20 C21 PNM doub 284 n y C20 H20 PNM sing 285 n n C21 C22 PNM sing 286 n y C21 H21 PNM sing 287 n n C22 C23 PNM doub 288 n y C22 H22 PNM sing 289 n n C23 H23 PNM sing 290 n n # _atom_sites.entry_id 1XA7 _atom_sites.fract_transf_matrix[1][1] 0.011314 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PNM A 1 301 59 PNM PG1 . D 2 PNM B 1 301 59 PNM PG1 . E 3 HOH A 1 401 24 HOH HOH . E 3 HOH A 2 402 10 HOH HOH . E 3 HOH A 3 403 5 HOH HOH . E 3 HOH A 4 404 11 HOH HOH . E 3 HOH A 5 405 7 HOH HOH . E 3 HOH A 6 406 31 HOH HOH . E 3 HOH A 7 407 1 HOH HOH . E 3 HOH A 8 408 8 HOH HOH . E 3 HOH A 9 409 19 HOH HOH . E 3 HOH A 10 410 3 HOH HOH . E 3 HOH A 11 411 14 HOH HOH . E 3 HOH A 12 412 23 HOH HOH . E 3 HOH A 13 413 21 HOH HOH . E 3 HOH A 14 414 33 HOH HOH . E 3 HOH A 15 415 17 HOH HOH . E 3 HOH A 16 416 35 HOH HOH . E 3 HOH A 17 417 15 HOH HOH . E 3 HOH A 18 418 13 HOH HOH . E 3 HOH A 19 419 37 HOH HOH . E 3 HOH A 20 420 25 HOH HOH . E 3 HOH A 21 421 34 HOH HOH . E 3 HOH A 22 422 40 HOH HOH . F 3 HOH B 1 401 20 HOH HOH . F 3 HOH B 2 402 22 HOH HOH . F 3 HOH B 3 403 2 HOH HOH . F 3 HOH B 4 404 4 HOH HOH . F 3 HOH B 5 405 27 HOH HOH . F 3 HOH B 6 406 6 HOH HOH . F 3 HOH B 7 407 9 HOH HOH . F 3 HOH B 8 408 18 HOH HOH . F 3 HOH B 9 409 32 HOH HOH . F 3 HOH B 10 410 29 HOH HOH . F 3 HOH B 11 411 38 HOH HOH . F 3 HOH B 12 412 28 HOH HOH . F 3 HOH B 13 413 30 HOH HOH . F 3 HOH B 14 414 39 HOH HOH . F 3 HOH B 15 415 16 HOH HOH . F 3 HOH B 16 416 12 HOH HOH . F 3 HOH B 17 417 36 HOH HOH . F 3 HOH B 18 418 26 HOH HOH . F 3 HOH B 19 419 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O8 PNM . . . C 2 23.224 30.262 -11.077 1 27.72 ? O8 PNM 301 A 1 HETATM 2 C C7 PNM . . . C 2 24.389 29.965 -10.967 1 28.7 ? C7 PNM 301 A 1 HETATM 3 N N4 PNM . . . C 2 24.131 28.016 -12.351 1 32.7 ? N4 PNM 301 A 1 HETATM 4 C C3 PNM . . . C 2 23.132 27.05 -12.659 1 35.2 ? C3 PNM 301 A 1 HETATM 5 C C11 PNM . . . C 2 22.645 27.264 -14.07 1 35.58 ? C11 PNM 301 A 1 HETATM 6 O O13 PNM . . . C 2 21.386 27.217 -14.274 1 32.75 ? O13 PNM 301 A 1 HETATM 7 O O12 PNM . . . C 2 23.511 27.507 -14.951 1 36.85 ? O12 PNM 301 A 1 HETATM 8 C C2 PNM . . . C 2 23.542 25.654 -12.112 1 38.38 ? C2 PNM 301 A 1 HETATM 9 C C10 PNM . . . C 2 23.993 24.798 -13.307 1 37.19 ? C10 PNM 301 A 1 HETATM 10 C C9 PNM . . . C 2 22.478 24.901 -11.317 1 39.3 ? C9 PNM 301 A 1 HETATM 11 S S1 PNM . . . C 2 24.919 25.962 -11.039 1 39.5 ? S1 PNM 301 A 1 HETATM 12 C C5 PNM . . . C 2 25.154 27.703 -11.392 1 34.2 ? C5 PNM 301 A 1 HETATM 13 C C6 PNM . . . C 2 24.845 28.722 -10.288 1 33.5 ? C6 PNM 301 A 1 HETATM 14 N N14 PNM . . . C 2 23.818 28.298 -9.343 1 34.39 ? N14 PNM 301 A 1 HETATM 15 C C15 PNM . . . C 2 24.156 27.722 -8.21 1 36.73 ? C15 PNM 301 A 1 HETATM 16 O O16 PNM . . . C 2 25.314 27.471 -8 1 33.16 ? O16 PNM 301 A 1 HETATM 17 C C17 PNM . . . C 2 23.079 27.426 -7.166 1 42.93 ? C17 PNM 301 A 1 HETATM 18 C C18 PNM . . . C 2 23.188 28.506 -6.091 1 45.04 ? C18 PNM 301 A 1 HETATM 19 C C19 PNM . . . C 2 22.721 29.814 -6.334 1 44.5 ? C19 PNM 301 A 1 HETATM 20 C C20 PNM . . . C 2 22.847 30.802 -5.344 1 46.43 ? C20 PNM 301 A 1 HETATM 21 C C21 PNM . . . C 2 23.459 30.488 -4.124 1 48.07 ? C21 PNM 301 A 1 HETATM 22 C C22 PNM . . . C 2 23.927 29.183 -3.889 1 47.98 ? C22 PNM 301 A 1 HETATM 23 C C23 PNM . . . C 2 23.789 28.195 -4.862 1 46.01 ? C23 PNM 301 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 23 #