data_1XAG # _model_server_result.job_id Kw8vaaJ-8oNYjlMUu-MMMA _model_server_result.datetime_utc '2024-12-11 19:23:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":400}' # _entry.id 1XAG # _exptl.entry_id 1XAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XAG _cell.length_a 53.29 _cell.length_b 53.29 _cell.length_c 240.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 178 A GLU 178 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 A NE2 HIS 242 A HIS 242 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 I O4 CRB . A CRB 500 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc5 I O5 CRB . A CRB 500 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 269 n n PA O2A NAD sing 270 n n PA O5B NAD sing 271 n n PA O3 NAD sing 272 n n O2A HOA2 NAD sing 273 n n O5B C5B NAD sing 274 n n C5B C4B NAD sing 275 n n C5B H51A NAD sing 276 n n C5B H52A NAD sing 277 n n C4B O4B NAD sing 278 n n C4B C3B NAD sing 279 n n C4B H4B NAD sing 280 n n O4B C1B NAD sing 281 n n C3B O3B NAD sing 282 n n C3B C2B NAD sing 283 n n C3B H3B NAD sing 284 n n O3B HO3A NAD sing 285 n n C2B O2B NAD sing 286 n n C2B C1B NAD sing 287 n n C2B H2B NAD sing 288 n n O2B HO2A NAD sing 289 n n C1B N9A NAD sing 290 n n C1B H1B NAD sing 291 n n N9A C8A NAD sing 292 n y N9A C4A NAD sing 293 n y C8A N7A NAD doub 294 n y C8A H8A NAD sing 295 n n N7A C5A NAD sing 296 n y C5A C6A NAD sing 297 n y C5A C4A NAD doub 298 n y C6A N6A NAD sing 299 n n C6A N1A NAD doub 300 n y N6A H61A NAD sing 301 n n N6A H62A NAD sing 302 n n N1A C2A NAD sing 303 n y C2A N3A NAD doub 304 n y C2A H2A NAD sing 305 n n N3A C4A NAD sing 306 n y O3 PN NAD sing 307 n n PN O1N NAD doub 308 n n PN O2N NAD sing 309 n n PN O5D NAD sing 310 n n O5D C5D NAD sing 311 n n C5D C4D NAD sing 312 n n C5D H51N NAD sing 313 n n C5D H52N NAD sing 314 n n C4D O4D NAD sing 315 n n C4D C3D NAD sing 316 n n C4D H4D NAD sing 317 n n O4D C1D NAD sing 318 n n C3D O3D NAD sing 319 n n C3D C2D NAD sing 320 n n C3D H3D NAD sing 321 n n O3D HO3N NAD sing 322 n n C2D O2D NAD sing 323 n n C2D C1D NAD sing 324 n n C2D H2D NAD sing 325 n n O2D HO2N NAD sing 326 n n C1D N1N NAD sing 327 n n C1D H1D NAD sing 328 n n N1N C2N NAD sing 329 n y N1N C6N NAD doub 330 n y C2N C3N NAD doub 331 n y C2N H2N NAD sing 332 n n C3N C7N NAD sing 333 n n C3N C4N NAD sing 334 n y C7N O7N NAD doub 335 n n C7N N7N NAD sing 336 n n N7N H71N NAD sing 337 n n N7N H72N NAD sing 338 n n C4N C5N NAD doub 339 n y C4N H4N NAD sing 340 n n C5N C6N NAD sing 341 n y C5N H5N NAD sing 342 n n C6N H6N NAD sing 343 n n # _atom_sites.entry_id 1XAG _atom_sites.fract_transf_matrix[1][1] 0.018765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 601 ZN ZN . C 3 CL A 1 602 602 CL CL . D 3 CL A 1 603 603 CL CL . E 3 CL A 1 604 604 CL CL . F 3 CL A 1 605 605 CL CL . G 3 CL A 1 606 606 CL CL . H 4 NAD A 1 400 400 NAD NAD . I 5 CRB A 1 500 500 CRB CRB . J 6 HOH A 1 607 1 HOH HOH . J 6 HOH A 2 608 2 HOH HOH . J 6 HOH A 3 609 3 HOH HOH . J 6 HOH A 4 610 4 HOH HOH . J 6 HOH A 5 611 5 HOH HOH . J 6 HOH A 6 612 6 HOH HOH . J 6 HOH A 7 613 7 HOH HOH . J 6 HOH A 8 614 8 HOH HOH . J 6 HOH A 9 615 9 HOH HOH . J 6 HOH A 10 616 10 HOH HOH . J 6 HOH A 11 617 11 HOH HOH . J 6 HOH A 12 618 12 HOH HOH . J 6 HOH A 13 619 13 HOH HOH . J 6 HOH A 14 620 14 HOH HOH . J 6 HOH A 15 621 15 HOH HOH . J 6 HOH A 16 622 16 HOH HOH . J 6 HOH A 17 623 17 HOH HOH . J 6 HOH A 18 624 18 HOH HOH . J 6 HOH A 19 625 19 HOH HOH . J 6 HOH A 20 626 20 HOH HOH . J 6 HOH A 21 627 21 HOH HOH . J 6 HOH A 22 628 22 HOH HOH . J 6 HOH A 23 629 23 HOH HOH . J 6 HOH A 24 630 24 HOH HOH . J 6 HOH A 25 631 25 HOH HOH . J 6 HOH A 26 632 26 HOH HOH . J 6 HOH A 27 633 27 HOH HOH . J 6 HOH A 28 634 28 HOH HOH . J 6 HOH A 29 635 29 HOH HOH . J 6 HOH A 30 636 30 HOH HOH . J 6 HOH A 31 637 31 HOH HOH . J 6 HOH A 32 638 32 HOH HOH . J 6 HOH A 33 639 33 HOH HOH . J 6 HOH A 34 640 34 HOH HOH . J 6 HOH A 35 641 35 HOH HOH . J 6 HOH A 36 642 36 HOH HOH . J 6 HOH A 37 643 37 HOH HOH . J 6 HOH A 38 644 38 HOH HOH . J 6 HOH A 39 645 39 HOH HOH . J 6 HOH A 40 646 40 HOH HOH . J 6 HOH A 41 647 41 HOH HOH . J 6 HOH A 42 648 42 HOH HOH . J 6 HOH A 43 649 43 HOH HOH . J 6 HOH A 44 650 44 HOH HOH . J 6 HOH A 45 651 45 HOH HOH . J 6 HOH A 46 652 46 HOH HOH . J 6 HOH A 47 653 47 HOH HOH . J 6 HOH A 48 654 48 HOH HOH . J 6 HOH A 49 655 49 HOH HOH . J 6 HOH A 50 656 50 HOH HOH . J 6 HOH A 51 657 51 HOH HOH . J 6 HOH A 52 658 52 HOH HOH . J 6 HOH A 53 659 53 HOH HOH . J 6 HOH A 54 660 54 HOH HOH . J 6 HOH A 55 661 55 HOH HOH . J 6 HOH A 56 662 56 HOH HOH . J 6 HOH A 57 663 57 HOH HOH . J 6 HOH A 58 664 58 HOH HOH . J 6 HOH A 59 665 59 HOH HOH . J 6 HOH A 60 666 61 HOH HOH . J 6 HOH A 61 667 62 HOH HOH . J 6 HOH A 62 668 63 HOH HOH . J 6 HOH A 63 669 64 HOH HOH . J 6 HOH A 64 670 65 HOH HOH . J 6 HOH A 65 671 67 HOH HOH . J 6 HOH A 66 672 68 HOH HOH . J 6 HOH A 67 673 69 HOH HOH . J 6 HOH A 68 674 70 HOH HOH . J 6 HOH A 69 675 71 HOH HOH . J 6 HOH A 70 676 72 HOH HOH . J 6 HOH A 71 677 74 HOH HOH . J 6 HOH A 72 678 75 HOH HOH . J 6 HOH A 73 679 76 HOH HOH . J 6 HOH A 74 680 77 HOH HOH . J 6 HOH A 75 681 78 HOH HOH . J 6 HOH A 76 682 79 HOH HOH . J 6 HOH A 77 683 80 HOH HOH . J 6 HOH A 78 684 82 HOH HOH . J 6 HOH A 79 685 84 HOH HOH . J 6 HOH A 80 686 85 HOH HOH . J 6 HOH A 81 687 87 HOH HOH . J 6 HOH A 82 688 88 HOH HOH . J 6 HOH A 83 689 89 HOH HOH . J 6 HOH A 84 690 91 HOH HOH . J 6 HOH A 85 691 92 HOH HOH . J 6 HOH A 86 692 93 HOH HOH . J 6 HOH A 87 693 94 HOH HOH . J 6 HOH A 88 694 95 HOH HOH . J 6 HOH A 89 695 96 HOH HOH . J 6 HOH A 90 696 97 HOH HOH . J 6 HOH A 91 697 98 HOH HOH . J 6 HOH A 92 698 99 HOH HOH . J 6 HOH A 93 699 100 HOH HOH . J 6 HOH A 94 700 101 HOH HOH . J 6 HOH A 95 701 102 HOH HOH . J 6 HOH A 96 702 104 HOH HOH . J 6 HOH A 97 703 105 HOH HOH . J 6 HOH A 98 704 106 HOH HOH . J 6 HOH A 99 705 107 HOH HOH . J 6 HOH A 100 706 108 HOH HOH . J 6 HOH A 101 707 109 HOH HOH . J 6 HOH A 102 708 111 HOH HOH . J 6 HOH A 103 709 112 HOH HOH . J 6 HOH A 104 710 113 HOH HOH . J 6 HOH A 105 711 114 HOH HOH . J 6 HOH A 106 712 115 HOH HOH . J 6 HOH A 107 713 117 HOH HOH . J 6 HOH A 108 714 118 HOH HOH . J 6 HOH A 109 715 119 HOH HOH . J 6 HOH A 110 716 120 HOH HOH . J 6 HOH A 111 717 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . H 4 21.671 31.342 -19.407 1 33.38 ? PA NAD 400 A 1 HETATM 2 O O1A NAD . . . H 4 22.749 30.628 -18.734 1 35.3 ? O1A NAD 400 A 1 HETATM 3 O O2A NAD . . . H 4 20.375 30.771 -19.024 1 43.24 ? O2A NAD 400 A 1 HETATM 4 O O5B NAD . . . H 4 21.867 31.256 -20.99 1 23.3 ? O5B NAD 400 A 1 HETATM 5 C C5B NAD . . . H 4 20.729 31.629 -21.855 1 35.08 ? C5B NAD 400 A 1 HETATM 6 C C4B NAD . . . H 4 20.421 30.466 -22.788 1 38.41 ? C4B NAD 400 A 1 HETATM 7 O O4B NAD . . . H 4 21.37 30.349 -23.879 1 41.12 ? O4B NAD 400 A 1 HETATM 8 C C3B NAD . . . H 4 20.405 29.06 -22.182 1 36.72 ? C3B NAD 400 A 1 HETATM 9 O O3B NAD . . . H 4 19.211 28.312 -22.555 1 40.7 ? O3B NAD 400 A 1 HETATM 10 C C2B NAD . . . H 4 21.661 28.339 -22.732 1 36.62 ? C2B NAD 400 A 1 HETATM 11 O O2B NAD . . . H 4 21.49 26.928 -22.812 1 44.74 ? O2B NAD 400 A 1 HETATM 12 C C1B NAD . . . H 4 21.811 28.973 -24.063 1 36.57 ? C1B NAD 400 A 1 HETATM 13 N N9A NAD . . . H 4 23.126 29.223 -24.652 1 34.29 ? N9A NAD 400 A 1 HETATM 14 C C8A NAD . . . H 4 24.299 29.495 -23.946 1 31.22 ? C8A NAD 400 A 1 HETATM 15 N N7A NAD . . . H 4 25.267 29.838 -24.783 1 33.88 ? N7A NAD 400 A 1 HETATM 16 C C5A NAD . . . H 4 24.751 29.631 -26.057 1 24.63 ? C5A NAD 400 A 1 HETATM 17 C C6A NAD . . . H 4 25.321 29.74 -27.351 1 33.5 ? C6A NAD 400 A 1 HETATM 18 N N6A NAD . . . H 4 26.563 30.133 -27.605 1 49.72 ? N6A NAD 400 A 1 HETATM 19 N N1A NAD . . . H 4 24.502 29.413 -28.437 1 40.8 ? N1A NAD 400 A 1 HETATM 20 C C2A NAD . . . H 4 23.187 29.09 -28.198 1 38.82 ? C2A NAD 400 A 1 HETATM 21 N N3A NAD . . . H 4 22.54 28.98 -27.037 1 40.77 ? N3A NAD 400 A 1 HETATM 22 C C4A NAD . . . H 4 23.432 29.257 -25.978 1 35.97 ? C4A NAD 400 A 1 HETATM 23 O O3 NAD . . . H 4 21.693 32.867 -18.975 1 38.86 ? O3 NAD 400 A 1 HETATM 24 P PN NAD . . . H 4 22.405 34.213 -19.468 1 43.67 ? PN NAD 400 A 1 HETATM 25 O O1N NAD . . . H 4 23.743 33.933 -19.969 1 33.08 ? O1N NAD 400 A 1 HETATM 26 O O2N NAD . . . H 4 21.603 34.845 -20.564 1 36.31 ? O2N NAD 400 A 1 HETATM 27 O O5D NAD . . . H 4 22.461 35.187 -18.171 1 37.9 ? O5D NAD 400 A 1 HETATM 28 C C5D NAD . . . H 4 21.395 35.253 -17.235 1 37.22 ? C5D NAD 400 A 1 HETATM 29 C C4D NAD . . . H 4 21.829 34.668 -15.876 1 41.59 ? C4D NAD 400 A 1 HETATM 30 O O4D NAD . . . H 4 22.994 35.401 -15.368 1 40.31 ? O4D NAD 400 A 1 HETATM 31 C C3D NAD . . . H 4 20.758 34.793 -14.77 1 38.18 ? C3D NAD 400 A 1 HETATM 32 O O3D NAD . . . H 4 20.845 33.622 -13.983 1 38.14 ? O3D NAD 400 A 1 HETATM 33 C C2D NAD . . . H 4 21.151 36.057 -14.038 1 31.79 ? C2D NAD 400 A 1 HETATM 34 O O2D NAD . . . H 4 20.594 36.16 -12.713 1 43.8 ? O2D NAD 400 A 1 HETATM 35 C C1D NAD . . . H 4 22.66 35.976 -14.055 1 39.49 ? C1D NAD 400 A 1 HETATM 36 N N1N NAD . . . H 4 23.378 37.25 -14.034 1 38.28 ? N1N NAD 400 A 1 HETATM 37 C C2N NAD . . . H 4 24.353 37.275 -13.052 1 37.39 ? C2N NAD 400 A 1 HETATM 38 C C3N NAD . . . H 4 25.329 38.267 -13.1 1 42.4 ? C3N NAD 400 A 1 HETATM 39 C C7N NAD . . . H 4 26.603 38.218 -12.221 1 41.67 ? C7N NAD 400 A 1 HETATM 40 O O7N NAD . . . H 4 27.493 39.052 -12.378 1 43.42 ? O7N NAD 400 A 1 HETATM 41 N N7N NAD . . . H 4 26.699 37.228 -11.295 1 27.93 ? N7N NAD 400 A 1 HETATM 42 C C4N NAD . . . H 4 25.239 39.408 -13.993 1 45.26 ? C4N NAD 400 A 1 HETATM 43 C C5N NAD . . . H 4 24.148 39.312 -14.925 1 42.43 ? C5N NAD 400 A 1 HETATM 44 C C6N NAD . . . H 4 23.141 38.375 -14.907 1 26.35 ? C6N NAD 400 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 44 #