data_1XAG # _model_server_result.job_id P52iXmKxTVvBnZysXYrcLA _model_server_result.datetime_utc '2024-12-12 07:05:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":500}' # _entry.id 1XAG # _exptl.entry_id 1XAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.174 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XAG _cell.length_a 53.29 _cell.length_b 53.29 _cell.length_c 240.07 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 178 A GLU 178 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc2 A NE2 HIS 242 A HIS 242 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc4 I O4 CRB . A CRB 500 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? metalc ? metalc5 I O5 CRB . A CRB 500 1_555 B ZN ZN . A ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? # _chem_comp.formula 'C8 H15 O8 P' _chem_comp.formula_weight 270.174 _chem_comp.id CRB _chem_comp.mon_nstd_flag . _chem_comp.name '[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CARBAPHOSPHONATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O11 CRB sing 70 n n C1 O12 CRB doub 71 n n C1 C2 CRB sing 72 n n O11 HOB CRB sing 73 n n C2 O2 CRB sing 74 n n C2 C3 CRB sing 75 n n C2 C8 CRB sing 76 n n O2 HO2 CRB sing 77 n n C3 C4 CRB sing 78 n n C3 H31 CRB sing 79 n n C3 H32 CRB sing 80 n n C4 O4 CRB sing 81 n n C4 C5 CRB sing 82 n n C4 H4 CRB sing 83 n n O4 HO4 CRB sing 84 n n C5 O5 CRB sing 85 n n C5 C6 CRB sing 86 n n C5 H5 CRB sing 87 n n O5 HO5 CRB sing 88 n n C6 C7 CRB sing 89 n n C6 C8 CRB sing 90 n n C6 H6 CRB sing 91 n n C7 P1 CRB sing 92 n n C7 H71 CRB sing 93 n n C7 H72 CRB sing 94 n n C8 H81 CRB sing 95 n n C8 H82 CRB sing 96 n n P1 O91 CRB doub 97 n n P1 O92 CRB sing 98 n n P1 O93 CRB sing 99 n n O92 HOP2 CRB sing 100 n n O93 HOP3 CRB sing 101 n n # _atom_sites.entry_id 1XAG _atom_sites.fract_transf_matrix[1][1] 0.018765 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018765 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004165 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 601 601 ZN ZN . C 3 CL A 1 602 602 CL CL . D 3 CL A 1 603 603 CL CL . E 3 CL A 1 604 604 CL CL . F 3 CL A 1 605 605 CL CL . G 3 CL A 1 606 606 CL CL . H 4 NAD A 1 400 400 NAD NAD . I 5 CRB A 1 500 500 CRB CRB . J 6 HOH A 1 607 1 HOH HOH . J 6 HOH A 2 608 2 HOH HOH . J 6 HOH A 3 609 3 HOH HOH . J 6 HOH A 4 610 4 HOH HOH . J 6 HOH A 5 611 5 HOH HOH . J 6 HOH A 6 612 6 HOH HOH . J 6 HOH A 7 613 7 HOH HOH . J 6 HOH A 8 614 8 HOH HOH . J 6 HOH A 9 615 9 HOH HOH . J 6 HOH A 10 616 10 HOH HOH . J 6 HOH A 11 617 11 HOH HOH . J 6 HOH A 12 618 12 HOH HOH . J 6 HOH A 13 619 13 HOH HOH . J 6 HOH A 14 620 14 HOH HOH . J 6 HOH A 15 621 15 HOH HOH . J 6 HOH A 16 622 16 HOH HOH . J 6 HOH A 17 623 17 HOH HOH . J 6 HOH A 18 624 18 HOH HOH . J 6 HOH A 19 625 19 HOH HOH . J 6 HOH A 20 626 20 HOH HOH . J 6 HOH A 21 627 21 HOH HOH . J 6 HOH A 22 628 22 HOH HOH . J 6 HOH A 23 629 23 HOH HOH . J 6 HOH A 24 630 24 HOH HOH . J 6 HOH A 25 631 25 HOH HOH . J 6 HOH A 26 632 26 HOH HOH . J 6 HOH A 27 633 27 HOH HOH . J 6 HOH A 28 634 28 HOH HOH . J 6 HOH A 29 635 29 HOH HOH . J 6 HOH A 30 636 30 HOH HOH . J 6 HOH A 31 637 31 HOH HOH . J 6 HOH A 32 638 32 HOH HOH . J 6 HOH A 33 639 33 HOH HOH . J 6 HOH A 34 640 34 HOH HOH . J 6 HOH A 35 641 35 HOH HOH . J 6 HOH A 36 642 36 HOH HOH . J 6 HOH A 37 643 37 HOH HOH . J 6 HOH A 38 644 38 HOH HOH . J 6 HOH A 39 645 39 HOH HOH . J 6 HOH A 40 646 40 HOH HOH . J 6 HOH A 41 647 41 HOH HOH . J 6 HOH A 42 648 42 HOH HOH . J 6 HOH A 43 649 43 HOH HOH . J 6 HOH A 44 650 44 HOH HOH . J 6 HOH A 45 651 45 HOH HOH . J 6 HOH A 46 652 46 HOH HOH . J 6 HOH A 47 653 47 HOH HOH . J 6 HOH A 48 654 48 HOH HOH . J 6 HOH A 49 655 49 HOH HOH . J 6 HOH A 50 656 50 HOH HOH . J 6 HOH A 51 657 51 HOH HOH . J 6 HOH A 52 658 52 HOH HOH . J 6 HOH A 53 659 53 HOH HOH . J 6 HOH A 54 660 54 HOH HOH . J 6 HOH A 55 661 55 HOH HOH . J 6 HOH A 56 662 56 HOH HOH . J 6 HOH A 57 663 57 HOH HOH . J 6 HOH A 58 664 58 HOH HOH . J 6 HOH A 59 665 59 HOH HOH . J 6 HOH A 60 666 61 HOH HOH . J 6 HOH A 61 667 62 HOH HOH . J 6 HOH A 62 668 63 HOH HOH . J 6 HOH A 63 669 64 HOH HOH . J 6 HOH A 64 670 65 HOH HOH . J 6 HOH A 65 671 67 HOH HOH . J 6 HOH A 66 672 68 HOH HOH . J 6 HOH A 67 673 69 HOH HOH . J 6 HOH A 68 674 70 HOH HOH . J 6 HOH A 69 675 71 HOH HOH . J 6 HOH A 70 676 72 HOH HOH . J 6 HOH A 71 677 74 HOH HOH . J 6 HOH A 72 678 75 HOH HOH . J 6 HOH A 73 679 76 HOH HOH . J 6 HOH A 74 680 77 HOH HOH . J 6 HOH A 75 681 78 HOH HOH . J 6 HOH A 76 682 79 HOH HOH . J 6 HOH A 77 683 80 HOH HOH . J 6 HOH A 78 684 82 HOH HOH . J 6 HOH A 79 685 84 HOH HOH . J 6 HOH A 80 686 85 HOH HOH . J 6 HOH A 81 687 87 HOH HOH . J 6 HOH A 82 688 88 HOH HOH . J 6 HOH A 83 689 89 HOH HOH . J 6 HOH A 84 690 91 HOH HOH . J 6 HOH A 85 691 92 HOH HOH . J 6 HOH A 86 692 93 HOH HOH . J 6 HOH A 87 693 94 HOH HOH . J 6 HOH A 88 694 95 HOH HOH . J 6 HOH A 89 695 96 HOH HOH . J 6 HOH A 90 696 97 HOH HOH . J 6 HOH A 91 697 98 HOH HOH . J 6 HOH A 92 698 99 HOH HOH . J 6 HOH A 93 699 100 HOH HOH . J 6 HOH A 94 700 101 HOH HOH . J 6 HOH A 95 701 102 HOH HOH . J 6 HOH A 96 702 104 HOH HOH . J 6 HOH A 97 703 105 HOH HOH . J 6 HOH A 98 704 106 HOH HOH . J 6 HOH A 99 705 107 HOH HOH . J 6 HOH A 100 706 108 HOH HOH . J 6 HOH A 101 707 109 HOH HOH . J 6 HOH A 102 708 111 HOH HOH . J 6 HOH A 103 709 112 HOH HOH . J 6 HOH A 104 710 113 HOH HOH . J 6 HOH A 105 711 114 HOH HOH . J 6 HOH A 106 712 115 HOH HOH . J 6 HOH A 107 713 117 HOH HOH . J 6 HOH A 108 714 118 HOH HOH . J 6 HOH A 109 715 119 HOH HOH . J 6 HOH A 110 716 120 HOH HOH . J 6 HOH A 111 717 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CRB . . . I 5 26.596 43.327 -10.307 1 40.22 ? C1 CRB 500 A 1 HETATM 2 O O11 CRB . . . I 5 26.812 43.957 -9.202 1 46.92 ? O11 CRB 500 A 1 HETATM 3 O O12 CRB . . . I 5 27.477 42.749 -10.972 1 46.34 ? O12 CRB 500 A 1 HETATM 4 C C2 CRB . . . I 5 25.121 43.299 -10.789 1 38.48 ? C2 CRB 500 A 1 HETATM 5 O O2 CRB . . . I 5 24.428 44.45 -10.319 1 39.49 ? O2 CRB 500 A 1 HETATM 6 C C3 CRB . . . I 5 24.93 43.276 -12.318 1 40.83 ? C3 CRB 500 A 1 HETATM 7 C C4 CRB . . . I 5 23.497 42.904 -12.702 1 49.2 ? C4 CRB 500 A 1 HETATM 8 O O4 CRB . . . I 5 23.303 42.938 -14.129 1 54.77 ? O4 CRB 500 A 1 HETATM 9 C C5 CRB . . . I 5 23.174 41.489 -12.124 1 37.33 ? C5 CRB 500 A 1 HETATM 10 O O5 CRB . . . I 5 22.002 40.985 -12.666 1 44.12 ? O5 CRB 500 A 1 HETATM 11 C C6 CRB . . . I 5 23.137 41.637 -10.597 1 43.25 ? C6 CRB 500 A 1 HETATM 12 C C7 CRB . . . I 5 22.654 40.415 -9.813 1 38.03 ? C7 CRB 500 A 1 HETATM 13 C C8 CRB . . . I 5 24.566 42.012 -10.087 1 44.65 ? C8 CRB 500 A 1 HETATM 14 P P1 CRB . . . I 5 22.23 40.641 -8.06 1 43.16 ? P1 CRB 500 A 1 HETATM 15 O O91 CRB . . . I 5 21.422 41.872 -7.938 1 46.26 ? O91 CRB 500 A 1 HETATM 16 O O92 CRB . . . I 5 23.611 40.709 -7.417 1 34.58 ? O92 CRB 500 A 1 HETATM 17 O O93 CRB . . . I 5 21.44 39.327 -7.724 1 52.16 ? O93 CRB 500 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 17 #