data_1XAL # _model_server_result.job_id 4YoUn6Lm5IjsIvpMgGxzqg _model_server_result.datetime_utc '2024-11-15 03:19:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xal # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 1XAL # _exptl.entry_id 1XAL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XAL _cell.length_a 55.1 _cell.length_b 55.1 _cell.length_c 232.319 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XAL _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 178 A GLU 178 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc2 A NE2 HIS 242 A HIS 242 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc3 A NE2 HIS 256 A HIS 256 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc4 E O5 CRB . A CRB 500 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.589 ? metalc ? metalc5 E O4 CRB . A CRB 500 1_555 C ZN ZN . A ZN 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc6 B OE1 GLU 178 B GLU 178 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 B NE2 HIS 242 B HIS 242 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc8 B NE2 HIS 256 B HIS 256 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? metalc ? metalc9 H O4 CRB . B CRB 501 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc10 H O5 CRB . B CRB 501 1_555 F ZN ZN . B ZN 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.604 ? # _chem_comp.formula 'C8 H15 O8 P' _chem_comp.formula_weight 270.174 _chem_comp.id CRB _chem_comp.mon_nstd_flag . _chem_comp.name '[1R-(1ALPHA,3BETA,4ALPHA,5BETA)]-5-(PHOSPHONOMETHYL)-1,3,4-TRIHYDROXYCYCLOHEXANE-1-CARBOXYLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms CARBAPHOSPHONATE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O11 CRB sing 70 n n C1 O12 CRB doub 71 n n C1 C2 CRB sing 72 n n O11 HOB CRB sing 73 n n C2 O2 CRB sing 74 n n C2 C3 CRB sing 75 n n C2 C8 CRB sing 76 n n O2 HO2 CRB sing 77 n n C3 C4 CRB sing 78 n n C3 H31 CRB sing 79 n n C3 H32 CRB sing 80 n n C4 O4 CRB sing 81 n n C4 C5 CRB sing 82 n n C4 H4 CRB sing 83 n n O4 HO4 CRB sing 84 n n C5 O5 CRB sing 85 n n C5 C6 CRB sing 86 n n C5 H5 CRB sing 87 n n O5 HO5 CRB sing 88 n n C6 C7 CRB sing 89 n n C6 C8 CRB sing 90 n n C6 H6 CRB sing 91 n n C7 P1 CRB sing 92 n n C7 H71 CRB sing 93 n n C7 H72 CRB sing 94 n n C8 H81 CRB sing 95 n n C8 H82 CRB sing 96 n n P1 O91 CRB doub 97 n n P1 O92 CRB sing 98 n n P1 O93 CRB sing 99 n n O92 HOP2 CRB sing 100 n n O93 HOP3 CRB sing 101 n n # _atom_sites.entry_id 1XAL _atom_sites.fract_transf_matrix[1][1] 0.018149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018149 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004304 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 600 600 ZN ZN . D 3 NAD A 1 400 400 NAD NAD . E 4 CRB A 1 500 500 CRB CRB . F 2 ZN B 1 601 601 ZN ZN . G 3 NAD B 1 401 401 NAD NAD . H 4 CRB B 1 501 501 CRB CRB . I 5 HOH A 1 601 1 HOH HOH . I 5 HOH A 2 602 2 HOH HOH . I 5 HOH A 3 603 3 HOH HOH . I 5 HOH A 4 604 4 HOH HOH . I 5 HOH A 5 605 5 HOH HOH . I 5 HOH A 6 606 6 HOH HOH . I 5 HOH A 7 607 7 HOH HOH . I 5 HOH A 8 608 8 HOH HOH . I 5 HOH A 9 609 9 HOH HOH . I 5 HOH A 10 610 10 HOH HOH . I 5 HOH A 11 611 11 HOH HOH . I 5 HOH A 12 612 12 HOH HOH . I 5 HOH A 13 613 13 HOH HOH . I 5 HOH A 14 614 14 HOH HOH . I 5 HOH A 15 615 16 HOH HOH . I 5 HOH A 16 616 17 HOH HOH . I 5 HOH A 17 617 18 HOH HOH . I 5 HOH A 18 618 19 HOH HOH . I 5 HOH A 19 619 20 HOH HOH . I 5 HOH A 20 620 21 HOH HOH . I 5 HOH A 21 621 22 HOH HOH . I 5 HOH A 22 622 23 HOH HOH . I 5 HOH A 23 623 26 HOH HOH . I 5 HOH A 24 624 27 HOH HOH . I 5 HOH A 25 625 28 HOH HOH . I 5 HOH A 26 626 29 HOH HOH . I 5 HOH A 27 627 30 HOH HOH . I 5 HOH A 28 628 1002 HOH HOH . I 5 HOH A 29 629 1006 HOH HOH . I 5 HOH A 30 630 1007 HOH HOH . I 5 HOH A 31 631 1008 HOH HOH . I 5 HOH A 32 632 1011 HOH HOH . I 5 HOH A 33 633 1016 HOH HOH . I 5 HOH A 34 634 1017 HOH HOH . I 5 HOH A 35 635 1023 HOH HOH . I 5 HOH A 36 636 1027 HOH HOH . I 5 HOH A 37 637 1028 HOH HOH . I 5 HOH A 38 638 1030 HOH HOH . I 5 HOH A 39 639 1033 HOH HOH . I 5 HOH A 40 640 1034 HOH HOH . I 5 HOH A 41 641 1037 HOH HOH . I 5 HOH A 42 642 1038 HOH HOH . I 5 HOH A 43 643 1040 HOH HOH . I 5 HOH A 44 644 1041 HOH HOH . I 5 HOH A 45 645 1043 HOH HOH . I 5 HOH A 46 646 1045 HOH HOH . I 5 HOH A 47 647 1046 HOH HOH . I 5 HOH A 48 648 1051 HOH HOH . I 5 HOH A 49 649 1052 HOH HOH . I 5 HOH A 50 650 1057 HOH HOH . I 5 HOH A 51 651 1058 HOH HOH . I 5 HOH A 52 652 1061 HOH HOH . I 5 HOH A 53 653 1063 HOH HOH . I 5 HOH A 54 654 1065 HOH HOH . I 5 HOH A 55 655 1066 HOH HOH . I 5 HOH A 56 656 1067 HOH HOH . I 5 HOH A 57 657 1069 HOH HOH . I 5 HOH A 58 658 1070 HOH HOH . I 5 HOH A 59 659 1071 HOH HOH . I 5 HOH A 60 660 1072 HOH HOH . I 5 HOH A 61 661 1073 HOH HOH . I 5 HOH A 62 662 1076 HOH HOH . I 5 HOH A 63 663 1077 HOH HOH . I 5 HOH A 64 664 1078 HOH HOH . I 5 HOH A 65 665 1079 HOH HOH . I 5 HOH A 66 666 1080 HOH HOH . I 5 HOH A 67 667 1081 HOH HOH . I 5 HOH A 68 668 1082 HOH HOH . I 5 HOH A 69 669 1087 HOH HOH . I 5 HOH A 70 670 42 HOH HOH . I 5 HOH A 71 671 2004 HOH HOH . J 5 HOH B 1 602 15 HOH HOH . J 5 HOH B 2 603 24 HOH HOH . J 5 HOH B 3 604 25 HOH HOH . J 5 HOH B 4 605 1004 HOH HOH . J 5 HOH B 5 606 31 HOH HOH . J 5 HOH B 6 607 32 HOH HOH . J 5 HOH B 7 608 33 HOH HOH . J 5 HOH B 8 609 35 HOH HOH . J 5 HOH B 9 610 36 HOH HOH . J 5 HOH B 10 611 37 HOH HOH . J 5 HOH B 11 612 40 HOH HOH . J 5 HOH B 12 613 41 HOH HOH . J 5 HOH B 13 614 43 HOH HOH . J 5 HOH B 14 615 45 HOH HOH . J 5 HOH B 15 616 46 HOH HOH . J 5 HOH B 16 617 47 HOH HOH . J 5 HOH B 17 618 48 HOH HOH . J 5 HOH B 18 619 49 HOH HOH . J 5 HOH B 19 620 50 HOH HOH . J 5 HOH B 20 621 51 HOH HOH . J 5 HOH B 21 622 53 HOH HOH . J 5 HOH B 22 623 55 HOH HOH . J 5 HOH B 23 624 56 HOH HOH . J 5 HOH B 24 625 57 HOH HOH . J 5 HOH B 25 626 60 HOH HOH . J 5 HOH B 26 627 2002 HOH HOH . J 5 HOH B 27 628 2006 HOH HOH . J 5 HOH B 28 629 2007 HOH HOH . J 5 HOH B 29 630 2008 HOH HOH . J 5 HOH B 30 631 2011 HOH HOH . J 5 HOH B 31 632 2016 HOH HOH . J 5 HOH B 32 633 2017 HOH HOH . J 5 HOH B 33 634 2023 HOH HOH . J 5 HOH B 34 635 2027 HOH HOH . J 5 HOH B 35 636 2028 HOH HOH . J 5 HOH B 36 637 2030 HOH HOH . J 5 HOH B 37 638 2033 HOH HOH . J 5 HOH B 38 639 2034 HOH HOH . J 5 HOH B 39 640 2037 HOH HOH . J 5 HOH B 40 641 2038 HOH HOH . J 5 HOH B 41 642 2040 HOH HOH . J 5 HOH B 42 643 2041 HOH HOH . J 5 HOH B 43 644 2043 HOH HOH . J 5 HOH B 44 645 2045 HOH HOH . J 5 HOH B 45 646 2046 HOH HOH . J 5 HOH B 46 647 2051 HOH HOH . J 5 HOH B 47 648 2052 HOH HOH . J 5 HOH B 48 649 2057 HOH HOH . J 5 HOH B 49 650 2058 HOH HOH . J 5 HOH B 50 651 2061 HOH HOH . J 5 HOH B 51 652 2063 HOH HOH . J 5 HOH B 52 653 2065 HOH HOH . J 5 HOH B 53 654 2066 HOH HOH . J 5 HOH B 54 655 2067 HOH HOH . J 5 HOH B 55 656 2069 HOH HOH . J 5 HOH B 56 657 2070 HOH HOH . J 5 HOH B 57 658 2071 HOH HOH . J 5 HOH B 58 659 2072 HOH HOH . J 5 HOH B 59 660 2073 HOH HOH . J 5 HOH B 60 661 2076 HOH HOH . J 5 HOH B 61 662 2077 HOH HOH . J 5 HOH B 62 663 2078 HOH HOH . J 5 HOH B 63 664 2079 HOH HOH . J 5 HOH B 64 665 2080 HOH HOH . J 5 HOH B 65 666 2081 HOH HOH . J 5 HOH B 66 667 2082 HOH HOH . J 5 HOH B 67 668 2087 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CRB . . . H 4 55.002 -44.783 14.359 1 100.06 ? C1 CRB 501 B 1 HETATM 2 O O11 CRB . . . H 4 55.38 -45.445 13.318 1 108.13 ? O11 CRB 501 B 1 HETATM 3 O O12 CRB . . . H 4 55.773 -44.21 15.159 1 91.21 ? O12 CRB 501 B 1 HETATM 4 C C2 CRB . . . H 4 53.471 -44.726 14.591 1 97.39 ? C2 CRB 501 B 1 HETATM 5 O O2 CRB . . . H 4 52.851 -45.786 13.871 1 84.32 ? O2 CRB 501 B 1 HETATM 6 C C3 CRB . . . H 4 53.057 -44.858 16.081 1 99.52 ? C3 CRB 501 B 1 HETATM 7 C C4 CRB . . . H 4 51.631 -44.393 16.37 1 110.58 ? C4 CRB 501 B 1 HETATM 8 O O4 CRB . . . H 4 51.388 -44.351 17.802 1 105.8 ? O4 CRB 501 B 1 HETATM 9 C C5 CRB . . . H 4 51.383 -42.976 15.745 1 116.15 ? C5 CRB 501 B 1 HETATM 10 O O5 CRB . . . H 4 50.102 -42.551 16.071 1 120.44 ? O5 CRB 501 B 1 HETATM 11 C C6 CRB . . . H 4 51.63 -43.061 14.212 1 118.9 ? C6 CRB 501 B 1 HETATM 12 C C7 CRB . . . H 4 51.277 -41.803 13.402 1 127.31 ? C7 CRB 501 B 1 HETATM 13 C C8 CRB . . . H 4 53.049 -43.354 13.959 1 108 ? C8 CRB 501 B 1 HETATM 14 P P1 CRB . . . H 4 50.717 -42.016 11.672 1 125.88 ? P1 CRB 501 B 1 HETATM 15 O O91 CRB . . . H 4 49.866 -43.223 11.605 1 127.82 ? O91 CRB 501 B 1 HETATM 16 O O92 CRB . . . H 4 52.038 -42.14 10.933 1 123.62 ? O92 CRB 501 B 1 HETATM 17 O O93 CRB . . . H 4 49.944 -40.669 11.384 1 114.74 ? O93 CRB 501 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 17 #