data_1XAR
#
_model_server_result.job_id            NyzIzWmLsk1UTkrp8qMcRQ 
_model_server_result.datetime_utc      '2024-12-21 11:35:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xar 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":100}' 
#
_entry.id    1XAR 
#
_exptl.entry_id    1XAR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XAR 
_cell.length_a            82.05 
_cell.length_b            82.05 
_cell.length_c            110.26 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XAR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PQS monomeric 1 software_defined_assembly 2 
PQS monomeric 1 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1,2 
A,C,D,G 2 1 
B,E,F,H 3 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 123.075 71.057384 73.506667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 50 A CYS 265 1_555 A SG CYS 180 A CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf2 A SG CYS 53 A CYS 268 1_555 A SG CYS 64 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 81 A CYS 296 1_555 A SG CYS 174 A CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf4 A SG CYS 153 A CYS 368 1_555 A SG CYS 166 A CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf5 B SG CYS 50 B CYS 265 1_555 B SG CYS 180 B CYS 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 53 B CYS 268 1_555 B SG CYS 64 B CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf7 B SG CYS 81 B CYS 296 1_555 B SG CYS 174 B CYS 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf8 B SG CYS 153 B CYS 368 1_555 B SG CYS 166 B CYS 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc1 G O HOH . A HOH 62 1_555 C NA NA . A NA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? 
metalc ? metalc2 G O HOH . A HOH 63 1_555 C NA NA . A NA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc3 C NA NA . A NA 100 1_555 A O ASN 146 A ASN 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc4 C NA NA . A NA 100 1_555 A O GLU 151 A GLU 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc5 C NA NA . A NA 100 1_555 A OD2 ASP 163 A ASP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.834 ? 
metalc ? metalc6 D NA NA . A NA 101 1_555 A OE2 GLU 144 A GLU 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc7 D NA NA . A NA 101 1_555 A O ASP 163 A ASP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc8 D NA NA . A NA 101 1_555 A OD1 ASP 163 A ASP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? 
metalc ? metalc9 H O HOH . B HOH 68 1_555 E NA NA . B NA 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? 
metalc ? metalc10 H O HOH . B HOH 75 1_555 F NA NA . B NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc11 E NA NA . B NA 200 1_555 B O ASN 146 B ASN 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc12 E NA NA . B NA 200 1_555 B O GLU 151 B GLU 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? 
metalc ? metalc13 E NA NA . B NA 200 1_555 B OD2 ASP 163 B ASP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc14 F NA NA . B NA 201 1_555 B OE1 GLU 144 B GLU 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc15 F NA NA . B NA 201 1_555 B OE1 GLU 151 B GLU 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc16 F NA NA . B NA 201 1_555 B O ASP 163 B ASP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc17 F NA NA . B NA 201 1_555 B OD1 ASP 163 B ASP 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XAR 
_atom_sites.fract_transf_matrix[1][1]    0.012188 
_atom_sites.fract_transf_matrix[1][2]    0.007037 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014074 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009069 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NA A 1 100 1 NA NA1 . 
D 2 NA A 1 101 2 NA NA1 . 
E 2 NA B 1 200 1 NA NA1 . 
F 2 NA B 1 201 2 NA NA1 . 
G 3 HOH A 1 1 1 HOH TIP . 
G 3 HOH A 2 5 5 HOH TIP . 
G 3 HOH A 3 6 6 HOH TIP . 
G 3 HOH A 4 7 7 HOH TIP . 
G 3 HOH A 5 11 11 HOH TIP . 
G 3 HOH A 6 12 12 HOH TIP . 
G 3 HOH A 7 14 14 HOH TIP . 
G 3 HOH A 8 15 15 HOH TIP . 
G 3 HOH A 9 16 16 HOH TIP . 
G 3 HOH A 10 18 18 HOH TIP . 
G 3 HOH A 11 21 21 HOH TIP . 
G 3 HOH A 12 25 25 HOH TIP . 
G 3 HOH A 13 30 30 HOH TIP . 
G 3 HOH A 14 36 36 HOH TIP . 
G 3 HOH A 15 37 37 HOH TIP . 
G 3 HOH A 16 39 39 HOH TIP . 
G 3 HOH A 17 42 42 HOH TIP . 
G 3 HOH A 18 44 44 HOH TIP . 
G 3 HOH A 19 47 47 HOH TIP . 
G 3 HOH A 20 48 48 HOH TIP . 
G 3 HOH A 21 51 51 HOH TIP . 
G 3 HOH A 22 54 54 HOH TIP . 
G 3 HOH A 23 55 55 HOH TIP . 
G 3 HOH A 24 56 56 HOH TIP . 
G 3 HOH A 25 57 57 HOH TIP . 
G 3 HOH A 26 58 58 HOH TIP . 
G 3 HOH A 27 59 59 HOH TIP . 
G 3 HOH A 28 60 60 HOH TIP . 
G 3 HOH A 29 61 61 HOH TIP . 
G 3 HOH A 30 62 62 HOH TIP . 
G 3 HOH A 31 63 63 HOH TIP . 
G 3 HOH A 32 64 64 HOH TIP . 
G 3 HOH A 33 71 71 HOH TIP . 
G 3 HOH A 34 72 72 HOH TIP . 
G 3 HOH A 35 73 73 HOH TIP . 
H 3 HOH B 1 2 2 HOH TIP . 
H 3 HOH B 2 3 3 HOH TIP . 
H 3 HOH B 3 4 4 HOH TIP . 
H 3 HOH B 4 8 8 HOH TIP . 
H 3 HOH B 5 9 9 HOH TIP . 
H 3 HOH B 6 10 10 HOH TIP . 
H 3 HOH B 7 13 13 HOH TIP . 
H 3 HOH B 8 17 17 HOH TIP . 
H 3 HOH B 9 19 19 HOH TIP . 
H 3 HOH B 10 20 20 HOH TIP . 
H 3 HOH B 11 22 22 HOH TIP . 
H 3 HOH B 12 23 23 HOH TIP . 
H 3 HOH B 13 24 24 HOH TIP . 
H 3 HOH B 14 26 26 HOH TIP . 
H 3 HOH B 15 27 27 HOH TIP . 
H 3 HOH B 16 28 28 HOH TIP . 
H 3 HOH B 17 29 29 HOH TIP . 
H 3 HOH B 18 31 31 HOH TIP . 
H 3 HOH B 19 32 32 HOH TIP . 
H 3 HOH B 20 33 33 HOH TIP . 
H 3 HOH B 21 34 34 HOH TIP . 
H 3 HOH B 22 35 35 HOH TIP . 
H 3 HOH B 23 38 38 HOH TIP . 
H 3 HOH B 24 40 40 HOH TIP . 
H 3 HOH B 25 41 41 HOH TIP . 
H 3 HOH B 26 43 43 HOH TIP . 
H 3 HOH B 27 45 45 HOH TIP . 
H 3 HOH B 28 46 46 HOH TIP . 
H 3 HOH B 29 49 49 HOH TIP . 
H 3 HOH B 30 50 50 HOH TIP . 
H 3 HOH B 31 52 52 HOH TIP . 
H 3 HOH B 32 53 53 HOH TIP . 
H 3 HOH B 33 65 65 HOH TIP . 
H 3 HOH B 34 66 66 HOH TIP . 
H 3 HOH B 35 67 67 HOH TIP . 
H 3 HOH B 36 68 68 HOH TIP . 
H 3 HOH B 37 69 69 HOH TIP . 
H 3 HOH B 38 70 70 HOH TIP . 
H 3 HOH B 39 74 74 HOH TIP . 
H 3 HOH B 40 75 75 HOH TIP . 
H 3 HOH B 41 76 76 HOH TIP . 
H 3 HOH B 42 77 77 HOH TIP . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               65.12 
_atom_site.Cartn_y               23.547 
_atom_site.Cartn_z               -9.405 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        64.85 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           100 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#