data_1XB3 # _model_server_result.job_id Cisz3VDcw3scCrMlou8AkQ _model_server_result.datetime_utc '2024-11-22 11:24:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xb3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1002}' # _entry.id 1XB3 # _exptl.entry_id 1XB3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XB3 _cell.length_a 81.412 _cell.length_b 87.338 _cell.length_c 31.366 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XB3 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf3 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 B SG CYS 62 B CYS 62 1_555 B SG CYS 74 B CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A O GLY 45 A GLY 45 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc2 A ND1 HIS 46 A HIS 46 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc3 A SG CYS 112 A CYS 112 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 A ND1 HIS 117 A HIS 117 1_555 C CU CU . A CU 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc5 B ND1 HIS 46 B HIS 46 1_555 D CU CU . B CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc6 B SG CYS 112 B CYS 112 1_555 D CU CU . B CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc7 B ND1 HIS 117 B HIS 117 1_555 D CU CU . B CU 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XB3 _atom_sites.fract_transf_matrix[1][1] 0.012283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031882 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 1001 1001 CU CU . D 2 CU B 1 1002 1002 CU CU . E 3 HOH A 1 1002 1 HOH HOH . E 3 HOH A 2 1003 2 HOH HOH . E 3 HOH A 3 1004 6 HOH HOH . E 3 HOH A 4 1005 8 HOH HOH . E 3 HOH A 5 1006 9 HOH HOH . E 3 HOH A 6 1007 13 HOH HOH . E 3 HOH A 7 1008 14 HOH HOH . E 3 HOH A 8 1009 15 HOH HOH . E 3 HOH A 9 1010 17 HOH HOH . E 3 HOH A 10 1011 18 HOH HOH . E 3 HOH A 11 1012 20 HOH HOH . E 3 HOH A 12 1013 23 HOH HOH . E 3 HOH A 13 1014 24 HOH HOH . E 3 HOH A 14 1015 25 HOH HOH . E 3 HOH A 15 1016 26 HOH HOH . E 3 HOH A 16 1017 27 HOH HOH . E 3 HOH A 17 1018 28 HOH HOH . E 3 HOH A 18 1019 29 HOH HOH . E 3 HOH A 19 1020 31 HOH HOH . E 3 HOH A 20 1021 33 HOH HOH . E 3 HOH A 21 1022 34 HOH HOH . E 3 HOH A 22 1023 36 HOH HOH . E 3 HOH A 23 1024 37 HOH HOH . E 3 HOH A 24 1025 38 HOH HOH . E 3 HOH A 25 1026 40 HOH HOH . E 3 HOH A 26 1027 42 HOH HOH . E 3 HOH A 27 1028 43 HOH HOH . E 3 HOH A 28 1029 45 HOH HOH . E 3 HOH A 29 1030 49 HOH HOH . E 3 HOH A 30 1031 50 HOH HOH . E 3 HOH A 31 1032 53 HOH HOH . E 3 HOH A 32 1033 60 HOH HOH . E 3 HOH A 33 1034 61 HOH HOH . E 3 HOH A 34 1035 65 HOH HOH . E 3 HOH A 35 1036 66 HOH HOH . E 3 HOH A 36 1037 68 HOH HOH . E 3 HOH A 37 1038 70 HOH HOH . E 3 HOH A 38 1039 71 HOH HOH . E 3 HOH A 39 1040 73 HOH HOH . E 3 HOH A 40 1041 74 HOH HOH . E 3 HOH A 41 1042 75 HOH HOH . E 3 HOH A 42 1043 77 HOH HOH . E 3 HOH A 43 1044 78 HOH HOH . E 3 HOH A 44 1045 82 HOH HOH . E 3 HOH A 45 1046 83 HOH HOH . E 3 HOH A 46 1047 84 HOH HOH . E 3 HOH A 47 1048 86 HOH HOH . E 3 HOH A 48 1049 87 HOH HOH . E 3 HOH A 49 1050 90 HOH HOH . E 3 HOH A 50 1051 91 HOH HOH . E 3 HOH A 51 1052 93 HOH HOH . E 3 HOH A 52 1053 94 HOH HOH . E 3 HOH A 53 1054 97 HOH HOH . E 3 HOH A 54 1055 100 HOH HOH . E 3 HOH A 55 1056 105 HOH HOH . E 3 HOH A 56 1057 108 HOH HOH . E 3 HOH A 57 1058 109 HOH HOH . E 3 HOH A 58 1059 111 HOH HOH . E 3 HOH A 59 1060 112 HOH HOH . E 3 HOH A 60 1061 113 HOH HOH . E 3 HOH A 61 1062 115 HOH HOH . E 3 HOH A 62 1063 118 HOH HOH . E 3 HOH A 63 1064 119 HOH HOH . E 3 HOH A 64 1065 120 HOH HOH . E 3 HOH A 65 1066 122 HOH HOH . E 3 HOH A 66 1067 123 HOH HOH . E 3 HOH A 67 1068 124 HOH HOH . E 3 HOH A 68 1069 130 HOH HOH . E 3 HOH A 69 1070 133 HOH HOH . E 3 HOH A 70 1071 139 HOH HOH . E 3 HOH A 71 1072 140 HOH HOH . E 3 HOH A 72 1073 141 HOH HOH . E 3 HOH A 73 1074 144 HOH HOH . E 3 HOH A 74 1075 145 HOH HOH . E 3 HOH A 75 1076 153 HOH HOH . E 3 HOH A 76 1077 160 HOH HOH . E 3 HOH A 77 1078 161 HOH HOH . E 3 HOH A 78 1079 162 HOH HOH . E 3 HOH A 79 1080 163 HOH HOH . E 3 HOH A 80 1081 164 HOH HOH . E 3 HOH A 81 1082 165 HOH HOH . E 3 HOH A 82 1083 166 HOH HOH . E 3 HOH A 83 1084 167 HOH HOH . E 3 HOH A 84 1085 168 HOH HOH . E 3 HOH A 85 1086 169 HOH HOH . E 3 HOH A 86 1087 170 HOH HOH . E 3 HOH A 87 1088 171 HOH HOH . E 3 HOH A 88 1089 172 HOH HOH . E 3 HOH A 89 1090 177 HOH HOH . E 3 HOH A 90 1091 179 HOH HOH . E 3 HOH A 91 1092 181 HOH HOH . E 3 HOH A 92 1093 183 HOH HOH . E 3 HOH A 93 1094 184 HOH HOH . E 3 HOH A 94 1095 187 HOH HOH . E 3 HOH A 95 1096 188 HOH HOH . E 3 HOH A 96 1097 190 HOH HOH . E 3 HOH A 97 1098 191 HOH HOH . E 3 HOH A 98 1099 193 HOH HOH . E 3 HOH A 99 1100 194 HOH HOH . E 3 HOH A 100 1101 195 HOH HOH . E 3 HOH A 101 1102 196 HOH HOH . E 3 HOH A 102 1103 197 HOH HOH . E 3 HOH A 103 1104 199 HOH HOH . E 3 HOH A 104 1105 200 HOH HOH . E 3 HOH A 105 1106 204 HOH HOH . E 3 HOH A 106 1107 205 HOH HOH . E 3 HOH A 107 1108 206 HOH HOH . E 3 HOH A 108 1109 207 HOH HOH . E 3 HOH A 109 1110 211 HOH HOH . E 3 HOH A 110 1111 213 HOH HOH . E 3 HOH A 111 1112 215 HOH HOH . E 3 HOH A 112 1113 216 HOH HOH . E 3 HOH A 113 1114 217 HOH HOH . F 3 HOH B 1 1003 3 HOH HOH . F 3 HOH B 2 1004 4 HOH HOH . F 3 HOH B 3 1005 5 HOH HOH . F 3 HOH B 4 1006 7 HOH HOH . F 3 HOH B 5 1007 10 HOH HOH . F 3 HOH B 6 1008 11 HOH HOH . F 3 HOH B 7 1009 12 HOH HOH . F 3 HOH B 8 1010 16 HOH HOH . F 3 HOH B 9 1011 19 HOH HOH . F 3 HOH B 10 1012 21 HOH HOH . F 3 HOH B 11 1013 22 HOH HOH . F 3 HOH B 12 1014 30 HOH HOH . F 3 HOH B 13 1015 32 HOH HOH . F 3 HOH B 14 1016 35 HOH HOH . F 3 HOH B 15 1017 39 HOH HOH . F 3 HOH B 16 1018 41 HOH HOH . F 3 HOH B 17 1019 44 HOH HOH . F 3 HOH B 18 1020 46 HOH HOH . F 3 HOH B 19 1021 47 HOH HOH . F 3 HOH B 20 1022 48 HOH HOH . F 3 HOH B 21 1023 51 HOH HOH . F 3 HOH B 22 1024 52 HOH HOH . F 3 HOH B 23 1025 54 HOH HOH . F 3 HOH B 24 1026 55 HOH HOH . F 3 HOH B 25 1027 56 HOH HOH . F 3 HOH B 26 1028 57 HOH HOH . F 3 HOH B 27 1029 58 HOH HOH . F 3 HOH B 28 1030 59 HOH HOH . F 3 HOH B 29 1031 62 HOH HOH . F 3 HOH B 30 1032 63 HOH HOH . F 3 HOH B 31 1033 64 HOH HOH . F 3 HOH B 32 1034 67 HOH HOH . F 3 HOH B 33 1035 69 HOH HOH . F 3 HOH B 34 1036 72 HOH HOH . F 3 HOH B 35 1037 76 HOH HOH . F 3 HOH B 36 1038 79 HOH HOH . F 3 HOH B 37 1039 80 HOH HOH . F 3 HOH B 38 1040 81 HOH HOH . F 3 HOH B 39 1041 85 HOH HOH . F 3 HOH B 40 1042 88 HOH HOH . F 3 HOH B 41 1043 89 HOH HOH . F 3 HOH B 42 1044 92 HOH HOH . F 3 HOH B 43 1045 95 HOH HOH . F 3 HOH B 44 1046 96 HOH HOH . F 3 HOH B 45 1047 98 HOH HOH . F 3 HOH B 46 1048 99 HOH HOH . F 3 HOH B 47 1049 101 HOH HOH . F 3 HOH B 48 1050 102 HOH HOH . F 3 HOH B 49 1051 103 HOH HOH . F 3 HOH B 50 1052 104 HOH HOH . F 3 HOH B 51 1053 106 HOH HOH . F 3 HOH B 52 1054 107 HOH HOH . F 3 HOH B 53 1055 110 HOH HOH . F 3 HOH B 54 1056 114 HOH HOH . F 3 HOH B 55 1057 116 HOH HOH . F 3 HOH B 56 1058 117 HOH HOH . F 3 HOH B 57 1059 121 HOH HOH . F 3 HOH B 58 1060 125 HOH HOH . F 3 HOH B 59 1061 126 HOH HOH . F 3 HOH B 60 1062 127 HOH HOH . F 3 HOH B 61 1063 128 HOH HOH . F 3 HOH B 62 1064 129 HOH HOH . F 3 HOH B 63 1065 131 HOH HOH . F 3 HOH B 64 1066 132 HOH HOH . F 3 HOH B 65 1067 134 HOH HOH . F 3 HOH B 66 1068 135 HOH HOH . F 3 HOH B 67 1069 136 HOH HOH . F 3 HOH B 68 1070 137 HOH HOH . F 3 HOH B 69 1071 138 HOH HOH . F 3 HOH B 70 1072 142 HOH HOH . F 3 HOH B 71 1073 143 HOH HOH . F 3 HOH B 72 1074 146 HOH HOH . F 3 HOH B 73 1075 147 HOH HOH . F 3 HOH B 74 1076 148 HOH HOH . F 3 HOH B 75 1077 149 HOH HOH . F 3 HOH B 76 1078 150 HOH HOH . F 3 HOH B 77 1079 151 HOH HOH . F 3 HOH B 78 1080 152 HOH HOH . F 3 HOH B 79 1081 154 HOH HOH . F 3 HOH B 80 1082 155 HOH HOH . F 3 HOH B 81 1083 156 HOH HOH . F 3 HOH B 82 1084 157 HOH HOH . F 3 HOH B 83 1085 158 HOH HOH . F 3 HOH B 84 1086 159 HOH HOH . F 3 HOH B 85 1087 173 HOH HOH . F 3 HOH B 86 1088 174 HOH HOH . F 3 HOH B 87 1089 175 HOH HOH . F 3 HOH B 88 1090 176 HOH HOH . F 3 HOH B 89 1091 178 HOH HOH . F 3 HOH B 90 1092 182 HOH HOH . F 3 HOH B 91 1093 185 HOH HOH . F 3 HOH B 92 1094 186 HOH HOH . F 3 HOH B 93 1095 189 HOH HOH . F 3 HOH B 94 1096 192 HOH HOH . F 3 HOH B 95 1097 198 HOH HOH . F 3 HOH B 96 1098 201 HOH HOH . F 3 HOH B 97 1099 202 HOH HOH . F 3 HOH B 98 1100 203 HOH HOH . F 3 HOH B 99 1101 208 HOH HOH . F 3 HOH B 100 1102 209 HOH HOH . F 3 HOH B 101 1103 210 HOH HOH . F 3 HOH B 102 1104 212 HOH HOH . F 3 HOH B 103 1105 214 HOH HOH . F 3 HOH B 104 1106 218 HOH HOH . F 3 HOH B 105 1107 220 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 66.497 _atom_site.Cartn_y 4.735 _atom_site.Cartn_z 20.814 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.28 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 88 _model_server_stats.create_model_time_ms 144 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #