data_1XBN
#
_model_server_result.job_id            E_rXf8y1cbjPXhAwd6RsSQ 
_model_server_result.datetime_utc      '2024-12-26 17:16:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xbn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":200}' 
#
_entry.id    1XBN 
#
_exptl.entry_id    1XBN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XBN 
_cell.length_a            120.607 
_cell.length_b            120.607 
_cell.length_c            120.607 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XBN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        208 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 3 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 102 A HIS 102 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? 
metalc ? metalc2 B O2 OXY . A OXY 198 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc3 B O1 OXY . A OXY 198 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 116 n n 
CHA C4D HEM doub 117 n n 
CHA HHA HEM sing 118 n n 
CHB C4A HEM sing 119 n n 
CHB C1B HEM doub 120 n n 
CHB HHB HEM sing 121 n n 
CHC C4B HEM sing 122 n n 
CHC C1C HEM doub 123 n n 
CHC HHC HEM sing 124 n n 
CHD C4C HEM doub 125 n n 
CHD C1D HEM sing 126 n n 
CHD HHD HEM sing 127 n n 
C1A C2A HEM doub 128 n y 
C1A NA HEM sing 129 n y 
C2A C3A HEM sing 130 n y 
C2A CAA HEM sing 131 n n 
C3A C4A HEM doub 132 n y 
C3A CMA HEM sing 133 n n 
C4A NA HEM sing 134 n y 
CMA HMA HEM sing 135 n n 
CMA HMAA HEM sing 136 n n 
CMA HMAB HEM sing 137 n n 
CAA CBA HEM sing 138 n n 
CAA HAA HEM sing 139 n n 
CAA HAAA HEM sing 140 n n 
CBA CGA HEM sing 141 n n 
CBA HBA HEM sing 142 n n 
CBA HBAA HEM sing 143 n n 
CGA O1A HEM doub 144 n n 
CGA O2A HEM sing 145 n n 
C1B C2B HEM sing 146 n n 
C1B NB HEM sing 147 n n 
C2B C3B HEM doub 148 n n 
C2B CMB HEM sing 149 n n 
C3B C4B HEM sing 150 n n 
C3B CAB HEM sing 151 n n 
C4B NB HEM doub 152 n n 
CMB HMB HEM sing 153 n n 
CMB HMBA HEM sing 154 n n 
CMB HMBB HEM sing 155 n n 
CAB CBB HEM doub 156 n n 
CAB HAB HEM sing 157 n n 
CBB HBB HEM sing 158 n n 
CBB HBBA HEM sing 159 n n 
C1C C2C HEM sing 160 n y 
C1C NC HEM sing 161 n y 
C2C C3C HEM doub 162 n y 
C2C CMC HEM sing 163 n n 
C3C C4C HEM sing 164 n y 
C3C CAC HEM sing 165 n n 
C4C NC HEM sing 166 n y 
CMC HMC HEM sing 167 n n 
CMC HMCA HEM sing 168 n n 
CMC HMCB HEM sing 169 n n 
CAC CBC HEM doub 170 n n 
CAC HAC HEM sing 171 n n 
CBC HBC HEM sing 172 n n 
CBC HBCA HEM sing 173 n n 
C1D C2D HEM sing 174 n n 
C1D ND HEM doub 175 n n 
C2D C3D HEM doub 176 n n 
C2D CMD HEM sing 177 n n 
C3D C4D HEM sing 178 n n 
C3D CAD HEM sing 179 n n 
C4D ND HEM sing 180 n n 
CMD HMD HEM sing 181 n n 
CMD HMDA HEM sing 182 n n 
CMD HMDB HEM sing 183 n n 
CAD CBD HEM sing 184 n n 
CAD HAD HEM sing 185 n n 
CAD HADA HEM sing 186 n n 
CBD CGD HEM sing 187 n n 
CBD HBD HEM sing 188 n n 
CBD HBDA HEM sing 189 n n 
CGD O1D HEM doub 190 n n 
CGD O2D HEM sing 191 n n 
O2A H2A HEM sing 192 n n 
O2D H2D HEM sing 193 n n 
FE NA HEM sing 194 n n 
FE NB HEM sing 195 n n 
FE NC HEM sing 196 n n 
FE ND HEM sing 197 n n 
#
_atom_sites.entry_id                     1XBN 
_atom_sites.fract_transf_matrix[1][1]    0.008291 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008291 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008291 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 OXY A 1 198 198 OXY OXY . 
C 3 HEM A 1 200 200 HEM HEM . 
D 4 HOH A 1 201 201 HOH HOH . 
D 4 HOH A 2 202 202 HOH HOH . 
D 4 HOH A 3 203 203 HOH HOH . 
D 4 HOH A 4 204 204 HOH HOH . 
D 4 HOH A 5 205 205 HOH HOH . 
D 4 HOH A 6 206 206 HOH HOH . 
D 4 HOH A 7 207 207 HOH HOH . 
D 4 HOH A 8 208 208 HOH HOH . 
D 4 HOH A 9 209 209 HOH HOH . 
D 4 HOH A 10 210 210 HOH HOH . 
D 4 HOH A 11 211 211 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 79.117 61.568 21.116 1 71.79 ? CHA HEM 200 A 1 
HETATM 2 C CHB HEM . . . C 3 76.979 57.847 19.057 1 49.76 ? CHB HEM 200 A 1 
HETATM 3 C CHC HEM . . . C 3 75.052 56.852 23.33 1 73.53 ? CHC HEM 200 A 1 
HETATM 4 C CHD HEM . . . C 3 76.387 61.091 25.058 1 63.72 ? CHD HEM 200 A 1 
HETATM 5 C C1A HEM . . . C 3 78.719 60.674 20.216 1 64.67 ? C1A HEM 200 A 1 
HETATM 6 C C2A HEM . . . C 3 79.467 60.457 19.043 1 60.84 ? C2A HEM 200 A 1 
HETATM 7 C C3A HEM . . . C 3 78.827 59.435 18.44 1 58.49 ? C3A HEM 200 A 1 
HETATM 8 C C4A HEM . . . C 3 77.776 58.946 19.298 1 56.97 ? C4A HEM 200 A 1 
HETATM 9 C CMA HEM . . . C 3 79.153 58.723 17.108 1 59.58 ? CMA HEM 200 A 1 
HETATM 10 C CAA HEM . . . C 3 80.49 61.486 18.451 1 66.07 ? CAA HEM 200 A 1 
HETATM 11 C CBA HEM . . . C 3 80.024 61.64 16.969 1 67.36 ? CBA HEM 200 A 1 
HETATM 12 C CGA HEM . . . C 3 80.444 62.901 16.337 1 72.18 ? CGA HEM 200 A 1 
HETATM 13 O O1A HEM . . . C 3 81.495 62.722 15.694 1 80.26 ? O1A HEM 200 A 1 
HETATM 14 O O2A HEM . . . C 3 79.809 64.015 16.455 1 74.58 ? O2A HEM 200 A 1 
HETATM 15 C C1B HEM . . . C 3 76.234 57.293 20.049 1 57.7 ? C1B HEM 200 A 1 
HETATM 16 C C2B HEM . . . C 3 75.365 56.162 19.913 1 60.37 ? C2B HEM 200 A 1 
HETATM 17 C C3B HEM . . . C 3 74.854 55.961 21.129 1 60.78 ? C3B HEM 200 A 1 
HETATM 18 C C4B HEM . . . C 3 75.333 56.929 22.025 1 68.21 ? C4B HEM 200 A 1 
HETATM 19 C CMB HEM . . . C 3 74.99 55.39 18.599 1 59.47 ? CMB HEM 200 A 1 
HETATM 20 C CAB HEM . . . C 3 73.891 54.902 21.652 1 62.78 ? CAB HEM 200 A 1 
HETATM 21 C CBB HEM . . . C 3 73.853 53.698 21.083 1 67.33 ? CBB HEM 200 A 1 
HETATM 22 C C1C HEM . . . C 3 75.322 57.843 24.183 1 74.89 ? C1C HEM 200 A 1 
HETATM 23 C C2C HEM . . . C 3 74.953 57.858 25.567 1 76.86 ? C2C HEM 200 A 1 
HETATM 24 C C3C HEM . . . C 3 75.324 59.056 26.023 1 81.63 ? C3C HEM 200 A 1 
HETATM 25 C C4C HEM . . . C 3 75.906 59.83 24.969 1 71.82 ? C4C HEM 200 A 1 
HETATM 26 C CMC HEM . . . C 3 74.187 56.752 26.352 1 69.28 ? CMC HEM 200 A 1 
HETATM 27 C CAC HEM . . . C 3 75.047 59.537 27.444 1 80.64 ? CAC HEM 200 A 1 
HETATM 28 C CBC HEM . . . C 3 73.791 59.313 27.845 1 80.63 ? CBC HEM 200 A 1 
HETATM 29 C C1D HEM . . . C 3 77.281 61.566 24.141 1 68.12 ? C1D HEM 200 A 1 
HETATM 30 C C2D HEM . . . C 3 77.912 62.86 24.229 1 64.8 ? C2D HEM 200 A 1 
HETATM 31 C C3D HEM . . . C 3 78.836 62.937 23.063 1 67.06 ? C3D HEM 200 A 1 
HETATM 32 C C4D HEM . . . C 3 78.58 61.72 22.335 1 67.44 ? C4D HEM 200 A 1 
HETATM 33 C CMD HEM . . . C 3 77.735 63.98 25.248 1 77.81 ? CMD HEM 200 A 1 
HETATM 34 C CAD HEM . . . C 3 79.684 64.132 22.572 1 71.98 ? CAD HEM 200 A 1 
HETATM 35 C CBD HEM . . . C 3 78.848 65.402 22.442 1 71.16 ? CBD HEM 200 A 1 
HETATM 36 C CGD HEM . . . C 3 79.785 66.557 22.117 1 74.9 ? CGD HEM 200 A 1 
HETATM 37 O O1D HEM . . . C 3 80.61 66.485 21.172 1 80.03 ? O1D HEM 200 A 1 
HETATM 38 O O2D HEM . . . C 3 79.731 67.595 22.81 1 86.93 ? O2D HEM 200 A 1 
HETATM 39 N NA HEM . . . C 3 77.721 59.764 20.375 1 59.54 ? NA HEM 200 A 1 
HETATM 40 N NB HEM . . . C 3 76.167 57.75 21.369 1 62.49 ? NB HEM 200 A 1 
HETATM 41 N NC HEM . . . C 3 75.873 59.036 23.838 1 75.27 ? NC HEM 200 A 1 
HETATM 42 N ND HEM . . . C 3 77.602 60.96 22.908 1 58 ? ND HEM 200 A 1 
HETATM 43 FE FE HEM . . . C 3 76.76 59.436 22.093 1 68.66 ? FE HEM 200 A 1 
#
_model_server_stats.io_time_ms              42 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#