data_1XCB # _model_server_result.job_id e0-bBWHzNFcozEg2rwq7qA _model_server_result.datetime_utc '2024-12-21 12:43:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xcb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":213}' # _entry.id 1XCB # _exptl.entry_id 1XCB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.09 _cell.angle_gamma 90 _cell.entry_id 1XCB _cell.length_a 189.24 _cell.length_b 88.97 _cell.length_c 112.91 _cell.Z_PDB 28 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 PISA tetradecameric 14 software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,H,I,J,K 1 1 C,D,L,M,N,O,P 2 1 E,F,Q,R 3 1 G,S 4 1,2 A,B,G,H,I,J,K,S 5 4,5 C,D,E,F,L,M,N,O,P,Q,R 5 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 157.947337 0 108.487038 3 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 347.187337 0 108.487038 4 'crystal symmetry operation' 3_545 x+1/2,y-1/2,z 1 0 0 0 1 0 0 0 1 94.62 -44.485 0 5 'crystal symmetry operation' 4_646 -x+3/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 252.567337 -44.485 108.487038 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N ? 2 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 87 A GLY 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C MSE 88 A MSE 88 1_555 A N GLY 89 A GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLY 87 B GLY 87 1_555 B N MSE 88 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C MSE 88 B MSE 88 1_555 B N GLY 89 B GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C GLY 87 C GLY 87 1_555 C N MSE 88 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale6 C C MSE 88 C MSE 88 1_555 C N GLY 89 C GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 D C GLY 87 D GLY 87 1_555 D N MSE 88 D MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 D C MSE 88 D MSE 88 1_555 D N GLY 89 D GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 E C MSE 1 E MSE 1 1_555 E N LYS 2 E LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 E C GLY 87 E GLY 87 1_555 E N MSE 88 E MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale11 E C MSE 88 E MSE 88 1_555 E N GLY 89 E GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 F C GLY 87 F GLY 87 1_555 F N MSE 88 F MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 F C MSE 88 F MSE 88 1_555 F N GLY 89 F GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 G C GLY 87 G GLY 87 1_555 G N MSE 88 G MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 G C MSE 88 G MSE 88 1_555 G N GLY 89 G GLY 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 B O GLY 139 B GLY 139 1_555 J CA CA . B CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.211 ? metalc ? metalc2 J CA CA . B CA 212 1_555 G O GLY 139 G GLY 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.317 ? metalc ? metalc3 D O GLY 139 D GLY 139 1_555 N CA CA . D CA 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? metalc ? metalc4 D O ASP 188 D ASP 188 1_555 O CA CA . D CA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.378 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XCB _atom_sites.fract_transf_matrix[1][1] 0.005284 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001524 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01124 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009218 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 CA A 1 212 12 CA CA . I 3 NAD A 1 213 1 NAD NAD . J 2 CA B 1 212 8 CA CA . K 3 NAD B 1 213 2 NAD NAD . L 2 CA C 1 212 10 CA CA . M 3 NAD C 1 213 3 NAD NAD . N 2 CA D 1 212 9 CA CA . O 2 CA D 1 213 11 CA CA . P 3 NAD D 1 214 4 NAD NAD . Q 3 NAD E 1 212 5 NAD NAD . R 3 NAD F 1 212 6 NAD NAD . S 3 NAD G 1 212 7 NAD NAD . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id O _atom_site.label_entity_id 2 _atom_site.Cartn_x 75.827 _atom_site.Cartn_y 57.159 _atom_site.Cartn_z 23.327 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 213 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #