data_1XCL
#
_model_server_result.job_id            VCxTSQ_VHzeWYx0NrnQ61Q 
_model_server_result.datetime_utc      '2024-10-12 19:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xcl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":236}' 
#
_entry.id    1XCL 
#
_exptl.entry_id    1XCL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         104.24 
_cell.angle_beta          112.89 
_cell.angle_gamma         104.16 
_cell.entry_id            1XCL 
_cell.length_a            36.157 
_cell.length_b            41.388 
_cell.length_c            42.574 
_cell.Z_PDB               1 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XCL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 285 n n 
N HN1 SAH sing 286 n n 
N HN2 SAH sing 287 n n 
CA CB SAH sing 288 n n 
CA C SAH sing 289 n n 
CA HA SAH sing 290 n n 
CB CG SAH sing 291 n n 
CB HB1 SAH sing 292 n n 
CB HB2 SAH sing 293 n n 
CG SD SAH sing 294 n n 
CG HG1 SAH sing 295 n n 
CG HG2 SAH sing 296 n n 
SD C5' SAH sing 297 n n 
C O SAH doub 298 n n 
C OXT SAH sing 299 n n 
OXT HXT SAH sing 300 n n 
C5' C4' SAH sing 301 n n 
C5' "H5'1" SAH sing 302 n n 
C5' "H5'2" SAH sing 303 n n 
C4' O4' SAH sing 304 n n 
C4' C3' SAH sing 305 n n 
C4' H4' SAH sing 306 n n 
O4' C1' SAH sing 307 n n 
C3' O3' SAH sing 308 n n 
C3' C2' SAH sing 309 n n 
C3' H3' SAH sing 310 n n 
O3' HO3' SAH sing 311 n n 
C2' O2' SAH sing 312 n n 
C2' C1' SAH sing 313 n n 
C2' H2' SAH sing 314 n n 
O2' HO2' SAH sing 315 n n 
C1' N9 SAH sing 316 n n 
C1' H1' SAH sing 317 n n 
N9 C8 SAH sing 318 n y 
N9 C4 SAH sing 319 n y 
C8 N7 SAH doub 320 n y 
C8 H8 SAH sing 321 n n 
N7 C5 SAH sing 322 n y 
C5 C6 SAH sing 323 n y 
C5 C4 SAH doub 324 n y 
C6 N6 SAH sing 325 n n 
C6 N1 SAH doub 326 n y 
N6 HN61 SAH sing 327 n n 
N6 HN62 SAH sing 328 n n 
N1 C2 SAH sing 329 n y 
C2 N3 SAH doub 330 n y 
C2 H2 SAH sing 331 n n 
N3 C4 SAH sing 332 n y 
#
_atom_sites.entry_id                     1XCL 
_atom_sites.fract_transf_matrix[1][1]    0.027657 
_atom_sites.fract_transf_matrix[1][2]    0.006978 
_atom_sites.fract_transf_matrix[1][3]    0.015518 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024919 
_atom_sites.fract_transf_matrix[2][3]    0.010297 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.027587 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SAH A 1 236 236 SAH SAH . 
C 3 GAI A 1 237 237 GAI GUN . 
D 4 HOH A 1 1001 1001 HOH H2O . 
D 4 HOH A 2 1002 1002 HOH H2O . 
D 4 HOH A 3 1003 1003 HOH H2O . 
D 4 HOH A 4 1004 1004 HOH H2O . 
D 4 HOH A 5 1005 1005 HOH H2O . 
D 4 HOH A 6 1006 1006 HOH H2O . 
D 4 HOH A 7 1007 1007 HOH H2O . 
D 4 HOH A 8 1008 1008 HOH H2O . 
D 4 HOH A 9 1009 1009 HOH H2O . 
D 4 HOH A 10 1010 1010 HOH H2O . 
D 4 HOH A 11 1011 1011 HOH H2O . 
D 4 HOH A 12 1012 1012 HOH H2O . 
D 4 HOH A 13 1013 1013 HOH H2O . 
D 4 HOH A 14 1014 1014 HOH H2O . 
D 4 HOH A 15 1015 1015 HOH H2O . 
D 4 HOH A 16 1016 1016 HOH H2O . 
D 4 HOH A 17 1017 1017 HOH H2O . 
D 4 HOH A 18 1018 1018 HOH H2O . 
D 4 HOH A 19 1019 1019 HOH H2O . 
D 4 HOH A 20 1020 1020 HOH H2O . 
D 4 HOH A 21 1021 1021 HOH H2O . 
D 4 HOH A 22 1022 1022 HOH H2O . 
D 4 HOH A 23 1023 1023 HOH H2O . 
D 4 HOH A 24 1024 1024 HOH H2O . 
D 4 HOH A 25 1025 1025 HOH H2O . 
D 4 HOH A 26 1026 1026 HOH H2O . 
D 4 HOH A 27 1027 1027 HOH H2O . 
D 4 HOH A 28 1028 1028 HOH H2O . 
D 4 HOH A 29 1029 1029 HOH H2O . 
D 4 HOH A 30 1030 1030 HOH H2O . 
D 4 HOH A 31 1031 1031 HOH H2O . 
D 4 HOH A 32 1032 1032 HOH H2O . 
D 4 HOH A 33 1033 1033 HOH H2O . 
D 4 HOH A 34 1034 1034 HOH H2O . 
D 4 HOH A 35 1035 1035 HOH H2O . 
D 4 HOH A 36 1036 1036 HOH H2O . 
D 4 HOH A 37 1037 1037 HOH H2O . 
D 4 HOH A 38 1038 1038 HOH H2O . 
D 4 HOH A 39 1039 1039 HOH H2O . 
D 4 HOH A 40 1040 1040 HOH H2O . 
D 4 HOH A 41 1041 1041 HOH H2O . 
D 4 HOH A 42 1042 1042 HOH H2O . 
D 4 HOH A 43 1043 1043 HOH H2O . 
D 4 HOH A 44 1044 1044 HOH H2O . 
D 4 HOH A 45 1045 1045 HOH H2O . 
D 4 HOH A 46 1046 1046 HOH H2O . 
D 4 HOH A 47 1047 1047 HOH H2O . 
D 4 HOH A 48 1048 1048 HOH H2O . 
D 4 HOH A 49 1049 1049 HOH H2O . 
D 4 HOH A 50 1050 1050 HOH H2O . 
D 4 HOH A 51 1051 1051 HOH H2O . 
D 4 HOH A 52 1052 1052 HOH H2O . 
D 4 HOH A 53 1053 1053 HOH H2O . 
D 4 HOH A 54 1054 1054 HOH H2O . 
D 4 HOH A 55 1055 1055 HOH H2O . 
D 4 HOH A 56 1056 1056 HOH H2O . 
D 4 HOH A 57 1057 1057 HOH H2O . 
D 4 HOH A 58 1058 1058 HOH H2O . 
D 4 HOH A 59 1059 1059 HOH H2O . 
D 4 HOH A 60 1060 1060 HOH H2O . 
D 4 HOH A 61 1061 1061 HOH H2O . 
D 4 HOH A 62 1062 1062 HOH H2O . 
D 4 HOH A 63 1063 1063 HOH H2O . 
D 4 HOH A 64 1064 1064 HOH H2O . 
D 4 HOH A 65 1065 1065 HOH H2O . 
D 4 HOH A 66 1066 1066 HOH H2O . 
D 4 HOH A 67 1067 1067 HOH H2O . 
D 4 HOH A 68 1068 1068 HOH H2O . 
D 4 HOH A 69 1069 1069 HOH H2O . 
D 4 HOH A 70 1070 1070 HOH H2O . 
D 4 HOH A 71 1071 1071 HOH H2O . 
D 4 HOH A 72 1072 1072 HOH H2O . 
D 4 HOH A 73 1073 1073 HOH H2O . 
D 4 HOH A 74 1074 1074 HOH H2O . 
D 4 HOH A 75 1075 1075 HOH H2O . 
D 4 HOH A 76 1076 1076 HOH H2O . 
D 4 HOH A 77 1077 1077 HOH H2O . 
D 4 HOH A 78 1078 1078 HOH H2O . 
D 4 HOH A 79 1079 1079 HOH H2O . 
D 4 HOH A 80 1080 1080 HOH H2O . 
D 4 HOH A 81 1081 1081 HOH H2O . 
D 4 HOH A 82 1082 1082 HOH H2O . 
D 4 HOH A 83 1083 1083 HOH H2O . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . B 2 8.455 4.859 -4.884 1 5.02 ? N SAH 236 A 1 
HETATM 2 C CA SAH . . . B 2 8.501 4.952 -3.41 1 2.81 ? CA SAH 236 A 1 
HETATM 3 C CB SAH . . . B 2 7.496 4.005 -2.779 1 6.24 ? CB SAH 236 A 1 
HETATM 4 C CG SAH . . . B 2 6.188 4.716 -2.566 1 4.39 ? CG SAH 236 A 1 
HETATM 5 S SD SAH . . . B 2 4.888 3.747 -1.779 1 5.8 ? SD SAH 236 A 1 
HETATM 6 C C SAH . . . B 2 9.926 4.679 -2.92 1 5.99 ? C SAH 236 A 1 
HETATM 7 O O SAH . . . B 2 10.815 4.451 -3.76 1 5.61 ? O SAH 236 A 1 
HETATM 8 O OXT SAH . . . B 2 10.093 4.715 -1.651 1 8.1 ? OXT SAH 236 A 1 
HETATM 9 C C5' SAH . . . B 2 3.416 4.558 -2.323 1 9.25 ? C5' SAH 236 A 1 
HETATM 10 C C4' SAH . . . B 2 3.082 5.912 -1.703 1 6.72 ? C4' SAH 236 A 1 
HETATM 11 O O4' SAH . . . B 2 1.851 6.362 -2.33 1 10.61 ? O4' SAH 236 A 1 
HETATM 12 C C3' SAH . . . B 2 2.728 5.89 -0.186 1 7.76 ? C3' SAH 236 A 1 
HETATM 13 O O3' SAH . . . B 2 3.599 6.853 0.465 1 8.49 ? O3' SAH 236 A 1 
HETATM 14 C C2' SAH . . . B 2 1.273 6.353 -0.106 1 9.56 ? C2' SAH 236 A 1 
HETATM 15 O O2' SAH . . . B 2 0.692 6.96 1.051 1 9.4 ? O2' SAH 236 A 1 
HETATM 16 C C1' SAH . . . B 2 1.139 7.156 -1.405 1 7.34 ? C1' SAH 236 A 1 
HETATM 17 N N9 SAH . . . B 2 -0.2 7.242 -1.941 1 4.43 ? N9 SAH 236 A 1 
HETATM 18 C C8 SAH . . . B 2 -1.183 6.275 -2.01 1 7.97 ? C8 SAH 236 A 1 
HETATM 19 N N7 SAH . . . B 2 -2.279 6.674 -2.592 1 5.33 ? N7 SAH 236 A 1 
HETATM 20 C C5 SAH . . . B 2 -2.005 7.998 -2.936 1 5.35 ? C5 SAH 236 A 1 
HETATM 21 C C6 SAH . . . B 2 -2.766 9.001 -3.608 1 6.29 ? C6 SAH 236 A 1 
HETATM 22 N N6 SAH . . . B 2 -4.014 8.767 -4.069 1 4.91 ? N6 SAH 236 A 1 
HETATM 23 N N1 SAH . . . B 2 -2.21 10.245 -3.804 1 2.07 ? N1 SAH 236 A 1 
HETATM 24 C C2 SAH . . . B 2 -0.957 10.466 -3.347 1 2 ? C2 SAH 236 A 1 
HETATM 25 N N3 SAH . . . B 2 -0.143 9.599 -2.708 1 2.64 ? N3 SAH 236 A 1 
HETATM 26 C C4 SAH . . . B 2 -0.731 8.366 -2.53 1 4.37 ? C4 SAH 236 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           26 
#