data_1XCM
#
_model_server_result.job_id            NYqdS_IP6gN816FU0DfpnQ 
_model_server_result.datetime_utc      '2024-11-22 22:00:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xcm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":171}' 
#
_entry.id    1XCM 
#
_exptl.entry_id    1XCM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XCM 
_cell.length_a            34.292 
_cell.length_b            81.419 
_cell.length_c            121.302 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XCM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LYS 117 A LYS 117 1_555 A N CSO 118 A CSO 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale2 A C CSO 118 A CSO 118 1_555 A N ASP 119 A ASP 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
metalc ? metalc1 A OG SER 17 A SER 17 1_555 B MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc2 D O2B GNP . A GNP 170 1_555 B MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc3 D O2G GNP . A GNP 170 1_555 B MG MG . A MG 171 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc4 B MG MG . A MG 171 1_555 E O HOH . A HOH 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 B MG MG . A MG 171 1_555 E O HOH . A HOH 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc6 B MG MG . A MG 171 1_555 E O HOH . A HOH 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc7 C MG MG . A MG 172 1_555 E O HOH . A HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? 
metalc ? metalc8 C MG MG . A MG 172 1_555 E O HOH . A HOH 253 4_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XCM 
_atom_sites.fract_transf_matrix[1][1]    0.029161 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012282 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008244 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 171 171 MG MG . 
C 2 MG A 1 172 172 MG MG . 
D 3 GNP A 1 170 170 GNP GNP . 
E 4 HOH A 1 173 1 HOH HOH . 
E 4 HOH A 2 174 2 HOH HOH . 
E 4 HOH A 3 175 3 HOH HOH . 
E 4 HOH A 4 176 4 HOH HOH . 
E 4 HOH A 5 177 5 HOH HOH . 
E 4 HOH A 6 178 6 HOH HOH . 
E 4 HOH A 7 179 7 HOH HOH . 
E 4 HOH A 8 180 8 HOH HOH . 
E 4 HOH A 9 181 9 HOH HOH . 
E 4 HOH A 10 182 10 HOH HOH . 
E 4 HOH A 11 183 11 HOH HOH . 
E 4 HOH A 12 184 12 HOH HOH . 
E 4 HOH A 13 185 13 HOH HOH . 
E 4 HOH A 14 186 14 HOH HOH . 
E 4 HOH A 15 187 15 HOH HOH . 
E 4 HOH A 16 188 16 HOH HOH . 
E 4 HOH A 17 189 17 HOH HOH . 
E 4 HOH A 18 190 18 HOH HOH . 
E 4 HOH A 19 191 19 HOH HOH . 
E 4 HOH A 20 192 20 HOH HOH . 
E 4 HOH A 21 193 21 HOH HOH . 
E 4 HOH A 22 194 22 HOH HOH . 
E 4 HOH A 23 195 23 HOH HOH . 
E 4 HOH A 24 196 24 HOH HOH . 
E 4 HOH A 25 197 25 HOH HOH . 
E 4 HOH A 26 198 26 HOH HOH . 
E 4 HOH A 27 199 27 HOH HOH . 
E 4 HOH A 28 200 28 HOH HOH . 
E 4 HOH A 29 201 29 HOH HOH . 
E 4 HOH A 30 202 30 HOH HOH . 
E 4 HOH A 31 203 31 HOH HOH . 
E 4 HOH A 32 204 32 HOH HOH . 
E 4 HOH A 33 205 33 HOH HOH . 
E 4 HOH A 34 206 34 HOH HOH . 
E 4 HOH A 35 207 35 HOH HOH . 
E 4 HOH A 36 208 36 HOH HOH . 
E 4 HOH A 37 209 37 HOH HOH . 
E 4 HOH A 38 210 38 HOH HOH . 
E 4 HOH A 39 211 39 HOH HOH . 
E 4 HOH A 40 212 40 HOH HOH . 
E 4 HOH A 41 213 41 HOH HOH . 
E 4 HOH A 42 214 42 HOH HOH . 
E 4 HOH A 43 215 43 HOH HOH . 
E 4 HOH A 44 216 44 HOH HOH . 
E 4 HOH A 45 217 45 HOH HOH . 
E 4 HOH A 46 218 46 HOH HOH . 
E 4 HOH A 47 219 47 HOH HOH . 
E 4 HOH A 48 220 48 HOH HOH . 
E 4 HOH A 49 221 49 HOH HOH . 
E 4 HOH A 50 222 50 HOH HOH . 
E 4 HOH A 51 223 51 HOH HOH . 
E 4 HOH A 52 224 52 HOH HOH . 
E 4 HOH A 53 225 53 HOH HOH . 
E 4 HOH A 54 226 54 HOH HOH . 
E 4 HOH A 55 227 55 HOH HOH . 
E 4 HOH A 56 228 56 HOH HOH . 
E 4 HOH A 57 229 57 HOH HOH . 
E 4 HOH A 58 230 58 HOH HOH . 
E 4 HOH A 59 231 59 HOH HOH . 
E 4 HOH A 60 232 60 HOH HOH . 
E 4 HOH A 61 233 61 HOH HOH . 
E 4 HOH A 62 234 62 HOH HOH . 
E 4 HOH A 63 235 63 HOH HOH . 
E 4 HOH A 64 236 64 HOH HOH . 
E 4 HOH A 65 237 65 HOH HOH . 
E 4 HOH A 66 238 66 HOH HOH . 
E 4 HOH A 67 239 67 HOH HOH . 
E 4 HOH A 68 240 68 HOH HOH . 
E 4 HOH A 69 241 69 HOH HOH . 
E 4 HOH A 70 242 70 HOH HOH . 
E 4 HOH A 71 243 71 HOH HOH . 
E 4 HOH A 72 244 72 HOH HOH . 
E 4 HOH A 73 245 73 HOH HOH . 
E 4 HOH A 74 246 74 HOH HOH . 
E 4 HOH A 75 247 75 HOH HOH . 
E 4 HOH A 76 248 76 HOH HOH . 
E 4 HOH A 77 249 77 HOH HOH . 
E 4 HOH A 78 250 78 HOH HOH . 
E 4 HOH A 79 251 79 HOH HOH . 
E 4 HOH A 80 252 80 HOH HOH . 
E 4 HOH A 81 253 81 HOH HOH . 
E 4 HOH A 82 254 82 HOH HOH . 
E 4 HOH A 83 255 83 HOH HOH . 
E 4 HOH A 84 256 84 HOH HOH . 
E 4 HOH A 85 257 85 HOH HOH . 
E 4 HOH A 86 258 86 HOH HOH . 
E 4 HOH A 87 259 87 HOH HOH . 
E 4 HOH A 88 260 88 HOH HOH . 
E 4 HOH A 89 261 89 HOH HOH . 
E 4 HOH A 90 262 90 HOH HOH . 
E 4 HOH A 91 263 91 HOH HOH . 
E 4 HOH A 92 264 92 HOH HOH . 
E 4 HOH A 93 265 93 HOH HOH . 
E 4 HOH A 94 266 94 HOH HOH . 
E 4 HOH A 95 267 95 HOH HOH . 
E 4 HOH A 96 268 96 HOH HOH . 
E 4 HOH A 97 269 97 HOH HOH . 
E 4 HOH A 98 270 98 HOH HOH . 
E 4 HOH A 99 271 99 HOH HOH . 
E 4 HOH A 100 272 100 HOH HOH . 
E 4 HOH A 101 273 101 HOH HOH . 
E 4 HOH A 102 274 102 HOH HOH . 
E 4 HOH A 103 275 103 HOH HOH . 
E 4 HOH A 104 276 104 HOH HOH . 
E 4 HOH A 105 277 105 HOH HOH . 
E 4 HOH A 106 278 106 HOH HOH . 
E 4 HOH A 107 279 107 HOH HOH . 
E 4 HOH A 108 280 108 HOH HOH . 
E 4 HOH A 109 281 109 HOH HOH . 
E 4 HOH A 110 282 110 HOH HOH . 
E 4 HOH A 111 283 111 HOH HOH . 
E 4 HOH A 112 284 112 HOH HOH . 
E 4 HOH A 113 285 113 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               10.648 
_atom_site.Cartn_y               11.483 
_atom_site.Cartn_z               37.383 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        10.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           171 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#