data_1XCU # _model_server_result.job_id pxKlpyr5FoCe4PF1PMnjrw _model_server_result.datetime_utc '2024-11-24 09:59:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":36}' # _entry.id 1XCU # _exptl.entry_id 1XCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XCU _cell.length_a 29.056 _cell.length_b 52.856 _cell.length_c 40.084 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 2 A DG 2 1_555 C CO CO . A CO 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc2 A OP1 DG 6 A DG 6 1_555 D CO CO . A CO 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc3 C CO CO . A CO 33 1_555 J O HOH . A HOH 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc4 C CO CO . A CO 33 1_555 J O HOH . A HOH 48 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc5 C CO CO . A CO 33 1_555 J O HOH . A HOH 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc6 C CO CO . A CO 33 1_555 J O HOH . A HOH 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc7 C CO CO . A CO 33 1_555 J O HOH . A HOH 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc8 D CO CO . A CO 35 1_555 J O HOH . A HOH 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc9 D CO CO . A CO 35 1_555 J O HOH . A HOH 53 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? metalc ? metalc10 D CO CO . A CO 35 1_555 J O HOH . A HOH 53 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc11 D CO CO . A CO 35 1_555 J O HOH . A HOH 53 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.539 ? metalc ? metalc12 B N7 DG 6 B DG 12 1_555 F CO CO . B CO 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc13 B N7 DG 6 B DG 12 3_755 F CO CO . B CO 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc14 B O6 DG 6 B DG 12 1_555 G BA BA . B BA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc15 B O6 DG 6 B DG 12 3_755 G BA BA . B BA 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc16 F CO CO . B CO 32 1_555 K O HOH . B HOH 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc17 F CO CO . B CO 32 1_555 K O HOH . B HOH 46 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc18 F CO CO . B CO 32 1_555 K O HOH . B HOH 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc19 F CO CO . B CO 32 1_555 K O HOH . B HOH 49 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc20 G BA BA . B BA 34 1_555 K O HOH . B HOH 49 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.311 ? metalc ? metalc21 G BA BA . B BA 34 1_555 K O HOH . B HOH 49 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 3.309 ? metalc ? metalc22 G BA BA . B BA 34 1_555 K O HOH . B HOH 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc23 G BA BA . B BA 34 1_555 K O HOH . B HOH 57 3_755 ? ? ? ? ? ? ? ? ? ? ? ? 2.832 ? hydrog WATSON-CRICK hydrog1 A N1 DG 2 A DG 2 1_555 B N3 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 2 A DG 2 1_555 B O2 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 2 A DG 2 1_555 B N4 DC 5 B DC 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 3 A DT 3 1_555 B N1 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 3 A DT 3 1_555 B N6 DA 4 B DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 4 A DA 4 1_555 B N3 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 4 A DA 4 1_555 B O4 DT 3 B DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DC 5 A DC 5 1_555 B N1 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N4 DC 5 A DC 5 1_555 B O6 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O2 DC 5 A DC 5 1_555 B N2 DG 2 B DG 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XCU _atom_sites.fract_transf_matrix[1][1] 0.034416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018919 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.024948 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 33 15 CO CO . D 2 CO A 1 35 17 CO CO . E 3 AN9 A 1 41 1 AN9 AN4 . F 2 CO B 1 32 13 CO CO . G 4 BA B 1 34 16 BA BA . H 5 NA B 1 36 28 NA NA . I 3 AN9 B 1 42 2 AN9 AN4 . J 6 HOH A 1 42 5 HOH HOH . J 6 HOH A 2 43 9 HOH HOH . J 6 HOH A 3 44 14 HOH HOH . J 6 HOH A 4 45 16 HOH HOH . J 6 HOH A 5 46 18 HOH HOH . J 6 HOH A 6 47 19 HOH HOH . J 6 HOH A 7 48 24 HOH HOH . J 6 HOH A 8 49 25 HOH HOH . J 6 HOH A 9 50 26 HOH HOH . J 6 HOH A 10 51 29 HOH HOH . J 6 HOH A 11 52 30 HOH HOH . J 6 HOH A 12 53 31 HOH HOH . K 6 HOH B 1 43 2 HOH HOH . K 6 HOH B 2 44 3 HOH HOH . K 6 HOH B 3 45 4 HOH HOH . K 6 HOH B 4 46 7 HOH HOH . K 6 HOH B 5 47 8 HOH HOH . K 6 HOH B 6 48 10 HOH HOH . K 6 HOH B 7 49 11 HOH HOH . K 6 HOH B 8 50 12 HOH HOH . K 6 HOH B 9 51 15 HOH HOH . K 6 HOH B 10 52 17 HOH HOH . K 6 HOH B 11 53 20 HOH HOH . K 6 HOH B 12 54 21 HOH HOH . K 6 HOH B 13 55 22 HOH HOH . K 6 HOH B 14 56 23 HOH HOH . K 6 HOH B 15 57 27 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 5 _atom_site.Cartn_x 14.527 _atom_site.Cartn_y 0.003 _atom_site.Cartn_z 20.046 _atom_site.occupancy 0.25 _atom_site.B_iso_or_equiv 72.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 36 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #