data_1XCW # _model_server_result.job_id qiwRzIi2vBJJBsY-VQamAw _model_server_result.datetime_utc '2024-11-05 15:31:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":499}' # _entry.id 1XCW # _exptl.entry_id 1XCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XCW _cell.length_a 52.9 _cell.length_b 69 _cell.length_c 131.9 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 AC1 _pdbx_entity_branch_link.comp_id_2 GLC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 501 ACA 2 n B AC1 2 B 2 AC1 ? 501 ACA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale2 A ND2 ASN 461 A ASN 461 1_555 E C1 NAG . A NAG 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale3 B O4 GLC . B GLC 1 1_555 B C1 AC1 . B AC1 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 sing metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc3 A OD2 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 A OD1 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 307 n n C1 O1 NAG sing 308 n n C1 O5 NAG sing 309 n n C1 H1 NAG sing 310 n n C2 C3 NAG sing 311 n n C2 N2 NAG sing 312 n n C2 H2 NAG sing 313 n n C3 C4 NAG sing 314 n n C3 O3 NAG sing 315 n n C3 H3 NAG sing 316 n n C4 C5 NAG sing 317 n n C4 O4 NAG sing 318 n n C4 H4 NAG sing 319 n n C5 C6 NAG sing 320 n n C5 O5 NAG sing 321 n n C5 H5 NAG sing 322 n n C6 O6 NAG sing 323 n n C6 H61 NAG sing 324 n n C6 H62 NAG sing 325 n n C7 C8 NAG sing 326 n n C7 N2 NAG sing 327 n n C7 O7 NAG doub 328 n n C8 H81 NAG sing 329 n n C8 H82 NAG sing 330 n n C8 H83 NAG sing 331 n n N2 HN2 NAG sing 332 n n O1 HO1 NAG sing 333 n n O3 HO3 NAG sing 334 n n O4 HO4 NAG sing 335 n n O6 HO6 NAG sing 336 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1XCW _atom_sites.fract_transf_matrix[1][1] 0.018904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014493 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007582 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 497 497 CA CA . D 4 CL A 1 498 498 CL CL . E 5 NAG A 1 499 499 NAG NAG . F 6 HOH A 1 502 502 HOH WAT . F 6 HOH A 2 503 503 HOH WAT . F 6 HOH A 3 504 504 HOH WAT . F 6 HOH A 4 505 505 HOH WAT . F 6 HOH A 5 506 506 HOH WAT . F 6 HOH A 6 507 507 HOH WAT . F 6 HOH A 7 508 508 HOH WAT . F 6 HOH A 8 509 509 HOH WAT . F 6 HOH A 9 510 510 HOH WAT . F 6 HOH A 10 511 511 HOH WAT . F 6 HOH A 11 512 512 HOH WAT . F 6 HOH A 12 513 513 HOH WAT . F 6 HOH A 13 514 514 HOH WAT . F 6 HOH A 14 515 515 HOH WAT . F 6 HOH A 15 516 516 HOH WAT . F 6 HOH A 16 517 517 HOH WAT . F 6 HOH A 17 518 518 HOH WAT . F 6 HOH A 18 519 519 HOH WAT . F 6 HOH A 19 520 520 HOH WAT . F 6 HOH A 20 522 522 HOH WAT . F 6 HOH A 21 523 523 HOH WAT . F 6 HOH A 22 524 524 HOH WAT . F 6 HOH A 23 525 525 HOH WAT . F 6 HOH A 24 526 526 HOH WAT . F 6 HOH A 25 527 527 HOH WAT . F 6 HOH A 26 528 528 HOH WAT . F 6 HOH A 27 529 529 HOH WAT . F 6 HOH A 28 530 530 HOH WAT . F 6 HOH A 29 531 531 HOH WAT . F 6 HOH A 30 532 532 HOH WAT . F 6 HOH A 31 533 533 HOH WAT . F 6 HOH A 32 534 534 HOH WAT . F 6 HOH A 33 535 535 HOH WAT . F 6 HOH A 34 536 536 HOH WAT . F 6 HOH A 35 538 538 HOH WAT . F 6 HOH A 36 539 539 HOH WAT . F 6 HOH A 37 540 540 HOH WAT . F 6 HOH A 38 541 541 HOH WAT . F 6 HOH A 39 542 542 HOH WAT . F 6 HOH A 40 543 543 HOH WAT . F 6 HOH A 41 544 544 HOH WAT . F 6 HOH A 42 545 545 HOH WAT . F 6 HOH A 43 546 546 HOH WAT . F 6 HOH A 44 547 547 HOH WAT . F 6 HOH A 45 548 548 HOH WAT . F 6 HOH A 46 550 550 HOH WAT . F 6 HOH A 47 551 551 HOH WAT . F 6 HOH A 48 552 552 HOH WAT . F 6 HOH A 49 553 553 HOH WAT . F 6 HOH A 50 554 554 HOH WAT . F 6 HOH A 51 555 555 HOH WAT . F 6 HOH A 52 556 556 HOH WAT . F 6 HOH A 53 557 557 HOH WAT . F 6 HOH A 54 560 560 HOH WAT . F 6 HOH A 55 561 561 HOH WAT . F 6 HOH A 56 565 565 HOH WAT . F 6 HOH A 57 566 566 HOH WAT . F 6 HOH A 58 567 567 HOH WAT . F 6 HOH A 59 568 568 HOH WAT . F 6 HOH A 60 569 569 HOH WAT . F 6 HOH A 61 570 570 HOH WAT . F 6 HOH A 62 571 571 HOH WAT . F 6 HOH A 63 572 572 HOH WAT . F 6 HOH A 64 573 573 HOH WAT . F 6 HOH A 65 574 574 HOH WAT . F 6 HOH A 66 575 575 HOH WAT . F 6 HOH A 67 576 576 HOH WAT . F 6 HOH A 68 577 577 HOH WAT . F 6 HOH A 69 578 578 HOH WAT . F 6 HOH A 70 579 579 HOH WAT . F 6 HOH A 71 580 580 HOH WAT . F 6 HOH A 72 581 581 HOH WAT . F 6 HOH A 73 582 582 HOH WAT . F 6 HOH A 74 583 583 HOH WAT . F 6 HOH A 75 584 584 HOH WAT . F 6 HOH A 76 585 585 HOH WAT . F 6 HOH A 77 587 587 HOH WAT . F 6 HOH A 78 590 590 HOH WAT . F 6 HOH A 79 591 591 HOH WAT . F 6 HOH A 80 592 592 HOH WAT . F 6 HOH A 81 593 593 HOH WAT . F 6 HOH A 82 594 594 HOH WAT . F 6 HOH A 83 595 595 HOH WAT . F 6 HOH A 84 598 598 HOH WAT . F 6 HOH A 85 600 600 HOH WAT . F 6 HOH A 86 603 603 HOH WAT . F 6 HOH A 87 605 605 HOH WAT . F 6 HOH A 88 608 608 HOH WAT . F 6 HOH A 89 609 609 HOH WAT . F 6 HOH A 90 611 611 HOH WAT . F 6 HOH A 91 613 613 HOH WAT . F 6 HOH A 92 614 614 HOH WAT . F 6 HOH A 93 615 615 HOH WAT . F 6 HOH A 94 617 617 HOH WAT . F 6 HOH A 95 618 618 HOH WAT . F 6 HOH A 96 620 620 HOH WAT . F 6 HOH A 97 623 623 HOH WAT . F 6 HOH A 98 624 624 HOH WAT . F 6 HOH A 99 625 625 HOH WAT . F 6 HOH A 100 626 626 HOH WAT . F 6 HOH A 101 627 627 HOH WAT . F 6 HOH A 102 628 628 HOH WAT . F 6 HOH A 103 629 629 HOH WAT . F 6 HOH A 104 630 630 HOH WAT . F 6 HOH A 105 631 631 HOH WAT . F 6 HOH A 106 632 632 HOH WAT . F 6 HOH A 107 633 633 HOH WAT . F 6 HOH A 108 634 634 HOH WAT . F 6 HOH A 109 635 635 HOH WAT . F 6 HOH A 110 637 637 HOH WAT . F 6 HOH A 111 638 638 HOH WAT . F 6 HOH A 112 639 639 HOH WAT . F 6 HOH A 113 641 641 HOH WAT . F 6 HOH A 114 643 643 HOH WAT . F 6 HOH A 115 644 644 HOH WAT . F 6 HOH A 116 648 648 HOH WAT . F 6 HOH A 117 649 649 HOH WAT . F 6 HOH A 118 651 651 HOH WAT . F 6 HOH A 119 652 652 HOH WAT . F 6 HOH A 120 657 657 HOH WAT . F 6 HOH A 121 658 658 HOH WAT . F 6 HOH A 122 661 661 HOH WAT . F 6 HOH A 123 662 662 HOH WAT . F 6 HOH A 124 664 664 HOH WAT . F 6 HOH A 125 665 665 HOH WAT . F 6 HOH A 126 666 666 HOH WAT . F 6 HOH A 127 667 667 HOH WAT . F 6 HOH A 128 669 669 HOH WAT . F 6 HOH A 129 671 671 HOH WAT . F 6 HOH A 130 673 673 HOH WAT . F 6 HOH A 131 675 675 HOH WAT . F 6 HOH A 132 677 677 HOH WAT . F 6 HOH A 133 680 680 HOH WAT . F 6 HOH A 134 686 686 HOH WAT . F 6 HOH A 135 693 693 HOH WAT . F 6 HOH A 136 696 696 HOH WAT . F 6 HOH A 137 699 699 HOH WAT . F 6 HOH A 138 702 702 HOH WAT . F 6 HOH A 139 704 704 HOH WAT . F 6 HOH A 140 705 705 HOH WAT . F 6 HOH A 141 707 707 HOH WAT . F 6 HOH A 142 708 708 HOH WAT . F 6 HOH A 143 713 713 HOH WAT . F 6 HOH A 144 714 714 HOH WAT . F 6 HOH A 145 724 724 HOH WAT . F 6 HOH A 146 725 725 HOH WAT . F 6 HOH A 147 734 734 HOH WAT . F 6 HOH A 148 746 746 HOH WAT . F 6 HOH A 149 748 748 HOH WAT . F 6 HOH A 150 749 749 HOH WAT . F 6 HOH A 151 751 751 HOH WAT . F 6 HOH A 152 753 753 HOH WAT . F 6 HOH A 153 755 755 HOH WAT . F 6 HOH A 154 758 758 HOH WAT . F 6 HOH A 155 759 759 HOH WAT . F 6 HOH A 156 763 763 HOH WAT . F 6 HOH A 157 770 770 HOH WAT . F 6 HOH A 158 771 771 HOH WAT . F 6 HOH A 159 775 775 HOH WAT . F 6 HOH A 160 776 776 HOH WAT . F 6 HOH A 161 780 780 HOH WAT . F 6 HOH A 162 783 783 HOH WAT . F 6 HOH A 163 787 787 HOH WAT . F 6 HOH A 164 802 802 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 5.973 65.913 57.052 1 38.5 ? C1 NAG 499 A 1 HETATM 2 C C2 NAG . . . E 5 6.818 66.704 58.034 1 40.34 ? C2 NAG 499 A 1 HETATM 3 C C3 NAG . . . E 5 6.441 68.174 57.967 1 41.2 ? C3 NAG 499 A 1 HETATM 4 C C4 NAG . . . E 5 6.558 68.731 56.572 1 41.4 ? C4 NAG 499 A 1 HETATM 5 C C5 NAG . . . E 5 5.817 67.836 55.549 1 42.1 ? C5 NAG 499 A 1 HETATM 6 C C6 NAG . . . E 5 6.136 68.195 54.096 1 42.44 ? C6 NAG 499 A 1 HETATM 7 C C7 NAG . . . E 5 7.59 65.822 60.175 1 46.42 ? C7 NAG 499 A 1 HETATM 8 C C8 NAG . . . E 5 7.134 65.333 61.528 1 46.91 ? C8 NAG 499 A 1 HETATM 9 N N2 NAG . . . E 5 6.578 66.195 59.397 1 43.86 ? N2 NAG 499 A 1 HETATM 10 O O3 NAG . . . E 5 7.289 68.899 58.888 1 43.35 ? O3 NAG 499 A 1 HETATM 11 O O4 NAG . . . E 5 5.965 70.028 56.509 1 42.07 ? O4 NAG 499 A 1 HETATM 12 O O5 NAG . . . E 5 6.182 66.429 55.748 1 40.95 ? O5 NAG 499 A 1 HETATM 13 O O6 NAG . . . E 5 5.406 67.344 53.197 1 51.83 ? O6 NAG 499 A 1 HETATM 14 O O7 NAG . . . E 5 8.774 65.864 59.851 1 50.26 ? O7 NAG 499 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 369 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #