data_1XCX
#
_model_server_result.job_id            OH5qg5TTIXEzgxM-t1zeUw 
_model_server_result.datetime_utc      '2024-11-05 19:54:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xcx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":497}' 
#
_entry.id    1XCX 
#
_exptl.entry_id    1XCX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XCX 
_cell.length_a            53.2 
_cell.length_b            69.2 
_cell.length_c            131.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XCX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_pdbx_entity_branch.entity_id    2 
_pdbx_entity_branch.type         oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 2 2 1 GLC BGC C1 O1 . O6 HO6 . sing 
2 ? 2 3 2 AC1 GLC C1 O1 . O4 HO4 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
2 n B BGC 1 B 1 BGC ? 501 IAB 
2 n B GLC 2 B 2 GLC ? 501 IAB 
2 n B AC1 3 B 3 AC1 ? 501 IAB 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? 
covale ? covale2 A ND2 ASN 461 A ASN 461 1_555 E C1 NAG . A NAG 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale3 B O6 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 sing 
covale ? covale4 B O4 GLC . B GLC 2 1_555 B C1 AC1 . B AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing 
metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc2 A O ARG 158 A ARG 158 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc3 A OD2 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc4 A OD1 ASP 167 A ASP 167 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc5 A O HIS 201 A HIS 201 1_555 C CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc6 C CA CA . A CA 497 1_555 F O HOH . A HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc7 C CA CA . A CA 497 1_555 F O HOH . A HOH 533 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc8 C CA CA . A CA 497 1_555 F O HOH . A HOH 563 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XCX 
_atom_sites.fract_transf_matrix[1][1]    0.018797 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007582 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA A 1 497 497 CA CA . 
D 4 CL A 1 498 498 CL CL . 
E 5 NAG A 1 499 499 NAG NAG . 
F 6 HOH A 1 506 506 HOH WAT . 
F 6 HOH A 2 507 507 HOH WAT . 
F 6 HOH A 3 508 508 HOH WAT . 
F 6 HOH A 4 509 509 HOH WAT . 
F 6 HOH A 5 510 510 HOH WAT . 
F 6 HOH A 6 511 511 HOH WAT . 
F 6 HOH A 7 512 512 HOH WAT . 
F 6 HOH A 8 513 513 HOH WAT . 
F 6 HOH A 9 514 514 HOH WAT . 
F 6 HOH A 10 515 515 HOH WAT . 
F 6 HOH A 11 516 516 HOH WAT . 
F 6 HOH A 12 517 517 HOH WAT . 
F 6 HOH A 13 518 518 HOH WAT . 
F 6 HOH A 14 519 519 HOH WAT . 
F 6 HOH A 15 520 520 HOH WAT . 
F 6 HOH A 16 521 521 HOH WAT . 
F 6 HOH A 17 522 522 HOH WAT . 
F 6 HOH A 18 523 523 HOH WAT . 
F 6 HOH A 19 524 524 HOH WAT . 
F 6 HOH A 20 525 525 HOH WAT . 
F 6 HOH A 21 526 526 HOH WAT . 
F 6 HOH A 22 527 527 HOH WAT . 
F 6 HOH A 23 528 528 HOH WAT . 
F 6 HOH A 24 529 529 HOH WAT . 
F 6 HOH A 25 530 530 HOH WAT . 
F 6 HOH A 26 531 531 HOH WAT . 
F 6 HOH A 27 532 532 HOH WAT . 
F 6 HOH A 28 533 533 HOH WAT . 
F 6 HOH A 29 534 534 HOH WAT . 
F 6 HOH A 30 535 535 HOH WAT . 
F 6 HOH A 31 536 536 HOH WAT . 
F 6 HOH A 32 537 537 HOH WAT . 
F 6 HOH A 33 538 538 HOH WAT . 
F 6 HOH A 34 539 539 HOH WAT . 
F 6 HOH A 35 540 540 HOH WAT . 
F 6 HOH A 36 541 541 HOH WAT . 
F 6 HOH A 37 542 542 HOH WAT . 
F 6 HOH A 38 543 543 HOH WAT . 
F 6 HOH A 39 544 544 HOH WAT . 
F 6 HOH A 40 545 545 HOH WAT . 
F 6 HOH A 41 546 546 HOH WAT . 
F 6 HOH A 42 547 547 HOH WAT . 
F 6 HOH A 43 548 548 HOH WAT . 
F 6 HOH A 44 549 549 HOH WAT . 
F 6 HOH A 45 550 550 HOH WAT . 
F 6 HOH A 46 551 551 HOH WAT . 
F 6 HOH A 47 552 552 HOH WAT . 
F 6 HOH A 48 553 553 HOH WAT . 
F 6 HOH A 49 554 554 HOH WAT . 
F 6 HOH A 50 555 555 HOH WAT . 
F 6 HOH A 51 556 556 HOH WAT . 
F 6 HOH A 52 557 557 HOH WAT . 
F 6 HOH A 53 558 558 HOH WAT . 
F 6 HOH A 54 559 559 HOH WAT . 
F 6 HOH A 55 560 560 HOH WAT . 
F 6 HOH A 56 561 561 HOH WAT . 
F 6 HOH A 57 562 562 HOH WAT . 
F 6 HOH A 58 563 563 HOH WAT . 
F 6 HOH A 59 564 564 HOH WAT . 
F 6 HOH A 60 565 565 HOH WAT . 
F 6 HOH A 61 567 567 HOH WAT . 
F 6 HOH A 62 568 568 HOH WAT . 
F 6 HOH A 63 569 569 HOH WAT . 
F 6 HOH A 64 570 570 HOH WAT . 
F 6 HOH A 65 571 571 HOH WAT . 
F 6 HOH A 66 572 572 HOH WAT . 
F 6 HOH A 67 573 573 HOH WAT . 
F 6 HOH A 68 574 574 HOH WAT . 
F 6 HOH A 69 575 575 HOH WAT . 
F 6 HOH A 70 576 576 HOH WAT . 
F 6 HOH A 71 577 577 HOH WAT . 
F 6 HOH A 72 578 578 HOH WAT . 
F 6 HOH A 73 579 579 HOH WAT . 
F 6 HOH A 74 580 580 HOH WAT . 
F 6 HOH A 75 581 581 HOH WAT . 
F 6 HOH A 76 582 582 HOH WAT . 
F 6 HOH A 77 583 583 HOH WAT . 
F 6 HOH A 78 584 584 HOH WAT . 
F 6 HOH A 79 585 585 HOH WAT . 
F 6 HOH A 80 586 586 HOH WAT . 
F 6 HOH A 81 587 587 HOH WAT . 
F 6 HOH A 82 588 588 HOH WAT . 
F 6 HOH A 83 589 589 HOH WAT . 
F 6 HOH A 84 590 590 HOH WAT . 
F 6 HOH A 85 591 591 HOH WAT . 
F 6 HOH A 86 593 593 HOH WAT . 
F 6 HOH A 87 594 594 HOH WAT . 
F 6 HOH A 88 595 595 HOH WAT . 
F 6 HOH A 89 596 596 HOH WAT . 
F 6 HOH A 90 597 597 HOH WAT . 
F 6 HOH A 91 598 598 HOH WAT . 
F 6 HOH A 92 599 599 HOH WAT . 
F 6 HOH A 93 600 600 HOH WAT . 
F 6 HOH A 94 601 601 HOH WAT . 
F 6 HOH A 95 602 602 HOH WAT . 
F 6 HOH A 96 603 603 HOH WAT . 
F 6 HOH A 97 604 604 HOH WAT . 
F 6 HOH A 98 605 605 HOH WAT . 
F 6 HOH A 99 606 606 HOH WAT . 
F 6 HOH A 100 607 607 HOH WAT . 
F 6 HOH A 101 608 608 HOH WAT . 
F 6 HOH A 102 610 610 HOH WAT . 
F 6 HOH A 103 611 611 HOH WAT . 
F 6 HOH A 104 613 613 HOH WAT . 
F 6 HOH A 105 614 614 HOH WAT . 
F 6 HOH A 106 615 615 HOH WAT . 
F 6 HOH A 107 616 616 HOH WAT . 
F 6 HOH A 108 617 617 HOH WAT . 
F 6 HOH A 109 618 618 HOH WAT . 
F 6 HOH A 110 619 619 HOH WAT . 
F 6 HOH A 111 620 620 HOH WAT . 
F 6 HOH A 112 621 621 HOH WAT . 
F 6 HOH A 113 622 622 HOH WAT . 
F 6 HOH A 114 623 623 HOH WAT . 
F 6 HOH A 115 625 625 HOH WAT . 
F 6 HOH A 116 626 626 HOH WAT . 
F 6 HOH A 117 627 627 HOH WAT . 
F 6 HOH A 118 628 628 HOH WAT . 
F 6 HOH A 119 629 629 HOH WAT . 
F 6 HOH A 120 630 630 HOH WAT . 
F 6 HOH A 121 631 631 HOH WAT . 
F 6 HOH A 122 632 632 HOH WAT . 
F 6 HOH A 123 634 634 HOH WAT . 
F 6 HOH A 124 635 635 HOH WAT . 
F 6 HOH A 125 636 636 HOH WAT . 
F 6 HOH A 126 638 638 HOH WAT . 
F 6 HOH A 127 639 639 HOH WAT . 
F 6 HOH A 128 641 641 HOH WAT . 
F 6 HOH A 129 643 643 HOH WAT . 
F 6 HOH A 130 644 644 HOH WAT . 
F 6 HOH A 131 645 645 HOH WAT . 
F 6 HOH A 132 646 646 HOH WAT . 
F 6 HOH A 133 648 648 HOH WAT . 
F 6 HOH A 134 649 649 HOH WAT . 
F 6 HOH A 135 650 650 HOH WAT . 
F 6 HOH A 136 652 652 HOH WAT . 
F 6 HOH A 137 653 653 HOH WAT . 
F 6 HOH A 138 655 655 HOH WAT . 
F 6 HOH A 139 656 656 HOH WAT . 
F 6 HOH A 140 657 657 HOH WAT . 
F 6 HOH A 141 659 659 HOH WAT . 
F 6 HOH A 142 660 660 HOH WAT . 
F 6 HOH A 143 661 661 HOH WAT . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               10.288 
_atom_site.Cartn_y               6.378 
_atom_site.Cartn_z               48.566 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        12.72 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           497 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#