data_1XD1
#
_model_server_result.job_id            KazbuYhyY70bw4jXPmWgxQ 
_model_server_result.datetime_utc      '2024-11-24 16:08:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xd1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":499}' 
#
_entry.id    1XD1 
#
_exptl.entry_id    1XD1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XD1 
_cell.length_a            52.7 
_cell.length_b            69 
_cell.length_c            132.3 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XD1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 A C PCA 1 A PCA 1 1_555 A N TYR 2 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? 
covale ? covale2 A ND2 ASN 461 A ASN 461 1_555 B C1 NAG . A NAG 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? 
metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? 
metalc ? metalc2 A O ARG 158 A ARG 158 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc3 A OD1 ASP 167 A ASP 167 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc4 A OD2 ASP 167 A ASP 167 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc5 A O HIS 201 A HIS 201 1_555 D CA CA . A CA 497 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 371 n n 
C1 O1 NAG sing 372 n n 
C1 O5 NAG sing 373 n n 
C1 H1 NAG sing 374 n n 
C2 C3 NAG sing 375 n n 
C2 N2 NAG sing 376 n n 
C2 H2 NAG sing 377 n n 
C3 C4 NAG sing 378 n n 
C3 O3 NAG sing 379 n n 
C3 H3 NAG sing 380 n n 
C4 C5 NAG sing 381 n n 
C4 O4 NAG sing 382 n n 
C4 H4 NAG sing 383 n n 
C5 C6 NAG sing 384 n n 
C5 O5 NAG sing 385 n n 
C5 H5 NAG sing 386 n n 
C6 O6 NAG sing 387 n n 
C6 H61 NAG sing 388 n n 
C6 H62 NAG sing 389 n n 
C7 C8 NAG sing 390 n n 
C7 N2 NAG sing 391 n n 
C7 O7 NAG doub 392 n n 
C8 H81 NAG sing 393 n n 
C8 H82 NAG sing 394 n n 
C8 H83 NAG sing 395 n n 
N2 HN2 NAG sing 396 n n 
O1 HO1 NAG sing 397 n n 
O3 HO3 NAG sing 398 n n 
O4 HO4 NAG sing 399 n n 
O6 HO6 NAG sing 400 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1XD1 
_atom_sites.fract_transf_matrix[1][1]    0.018975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014493 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007559 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 499 499 NAG NAG . 
C 3 6SA A 1 501 501 6SA HEX . 
D 4 CA A 1 497 497 CA CA . 
E 5 CL A 1 498 498 CL CL . 
F 6 HOH A 1 502 502 HOH WAT . 
F 6 HOH A 2 503 503 HOH WAT . 
F 6 HOH A 3 504 504 HOH WAT . 
F 6 HOH A 4 505 505 HOH WAT . 
F 6 HOH A 5 506 506 HOH WAT . 
F 6 HOH A 6 507 507 HOH WAT . 
F 6 HOH A 7 508 508 HOH WAT . 
F 6 HOH A 8 509 509 HOH WAT . 
F 6 HOH A 9 510 510 HOH WAT . 
F 6 HOH A 10 511 511 HOH WAT . 
F 6 HOH A 11 512 512 HOH WAT . 
F 6 HOH A 12 513 513 HOH WAT . 
F 6 HOH A 13 514 514 HOH WAT . 
F 6 HOH A 14 515 515 HOH WAT . 
F 6 HOH A 15 516 516 HOH WAT . 
F 6 HOH A 16 517 517 HOH WAT . 
F 6 HOH A 17 518 518 HOH WAT . 
F 6 HOH A 18 519 519 HOH WAT . 
F 6 HOH A 19 520 520 HOH WAT . 
F 6 HOH A 20 521 521 HOH WAT . 
F 6 HOH A 21 522 522 HOH WAT . 
F 6 HOH A 22 523 523 HOH WAT . 
F 6 HOH A 23 524 524 HOH WAT . 
F 6 HOH A 24 525 525 HOH WAT . 
F 6 HOH A 25 526 526 HOH WAT . 
F 6 HOH A 26 527 527 HOH WAT . 
F 6 HOH A 27 528 528 HOH WAT . 
F 6 HOH A 28 529 529 HOH WAT . 
F 6 HOH A 29 530 530 HOH WAT . 
F 6 HOH A 30 531 531 HOH WAT . 
F 6 HOH A 31 532 532 HOH WAT . 
F 6 HOH A 32 533 533 HOH WAT . 
F 6 HOH A 33 534 534 HOH WAT . 
F 6 HOH A 34 535 535 HOH WAT . 
F 6 HOH A 35 536 536 HOH WAT . 
F 6 HOH A 36 537 537 HOH WAT . 
F 6 HOH A 37 538 538 HOH WAT . 
F 6 HOH A 38 539 539 HOH WAT . 
F 6 HOH A 39 540 540 HOH WAT . 
F 6 HOH A 40 541 541 HOH WAT . 
F 6 HOH A 41 542 542 HOH WAT . 
F 6 HOH A 42 543 543 HOH WAT . 
F 6 HOH A 43 544 544 HOH WAT . 
F 6 HOH A 44 545 545 HOH WAT . 
F 6 HOH A 45 546 546 HOH WAT . 
F 6 HOH A 46 547 547 HOH WAT . 
F 6 HOH A 47 548 548 HOH WAT . 
F 6 HOH A 48 549 549 HOH WAT . 
F 6 HOH A 49 550 550 HOH WAT . 
F 6 HOH A 50 551 551 HOH WAT . 
F 6 HOH A 51 552 552 HOH WAT . 
F 6 HOH A 52 553 553 HOH WAT . 
F 6 HOH A 53 554 554 HOH WAT . 
F 6 HOH A 54 555 555 HOH WAT . 
F 6 HOH A 55 556 556 HOH WAT . 
F 6 HOH A 56 557 557 HOH WAT . 
F 6 HOH A 57 558 558 HOH WAT . 
F 6 HOH A 58 559 559 HOH WAT . 
F 6 HOH A 59 560 560 HOH WAT . 
F 6 HOH A 60 561 561 HOH WAT . 
F 6 HOH A 61 562 562 HOH WAT . 
F 6 HOH A 62 563 563 HOH WAT . 
F 6 HOH A 63 564 564 HOH WAT . 
F 6 HOH A 64 565 565 HOH WAT . 
F 6 HOH A 65 566 566 HOH WAT . 
F 6 HOH A 66 567 567 HOH WAT . 
F 6 HOH A 67 568 568 HOH WAT . 
F 6 HOH A 68 569 569 HOH WAT . 
F 6 HOH A 69 570 570 HOH WAT . 
F 6 HOH A 70 571 571 HOH WAT . 
F 6 HOH A 71 572 572 HOH WAT . 
F 6 HOH A 72 573 573 HOH WAT . 
F 6 HOH A 73 574 574 HOH WAT . 
F 6 HOH A 74 575 575 HOH WAT . 
F 6 HOH A 75 576 576 HOH WAT . 
F 6 HOH A 76 577 577 HOH WAT . 
F 6 HOH A 77 578 578 HOH WAT . 
F 6 HOH A 78 579 579 HOH WAT . 
F 6 HOH A 79 580 580 HOH WAT . 
F 6 HOH A 80 581 581 HOH WAT . 
F 6 HOH A 81 582 582 HOH WAT . 
F 6 HOH A 82 583 583 HOH WAT . 
F 6 HOH A 83 584 584 HOH WAT . 
F 6 HOH A 84 585 585 HOH WAT . 
F 6 HOH A 85 586 586 HOH WAT . 
F 6 HOH A 86 587 587 HOH WAT . 
F 6 HOH A 87 588 588 HOH WAT . 
F 6 HOH A 88 589 589 HOH WAT . 
F 6 HOH A 89 590 590 HOH WAT . 
F 6 HOH A 90 591 591 HOH WAT . 
F 6 HOH A 91 592 592 HOH WAT . 
F 6 HOH A 92 593 593 HOH WAT . 
F 6 HOH A 93 594 594 HOH WAT . 
F 6 HOH A 94 595 595 HOH WAT . 
F 6 HOH A 95 596 596 HOH WAT . 
F 6 HOH A 96 597 597 HOH WAT . 
F 6 HOH A 97 598 598 HOH WAT . 
F 6 HOH A 98 599 599 HOH WAT . 
F 6 HOH A 99 600 600 HOH WAT . 
F 6 HOH A 100 601 601 HOH WAT . 
F 6 HOH A 101 602 602 HOH WAT . 
F 6 HOH A 102 603 603 HOH WAT . 
F 6 HOH A 103 604 604 HOH WAT . 
F 6 HOH A 104 605 605 HOH WAT . 
F 6 HOH A 105 606 606 HOH WAT . 
F 6 HOH A 106 607 607 HOH WAT . 
F 6 HOH A 107 608 608 HOH WAT . 
F 6 HOH A 108 609 609 HOH WAT . 
F 6 HOH A 109 610 610 HOH WAT . 
F 6 HOH A 110 612 612 HOH WAT . 
F 6 HOH A 111 613 613 HOH WAT . 
F 6 HOH A 112 614 614 HOH WAT . 
F 6 HOH A 113 615 615 HOH WAT . 
F 6 HOH A 114 616 616 HOH WAT . 
F 6 HOH A 115 617 617 HOH WAT . 
F 6 HOH A 116 618 618 HOH WAT . 
F 6 HOH A 117 619 619 HOH WAT . 
F 6 HOH A 118 620 620 HOH WAT . 
F 6 HOH A 119 622 622 HOH WAT . 
F 6 HOH A 120 623 623 HOH WAT . 
F 6 HOH A 121 624 624 HOH WAT . 
F 6 HOH A 122 625 625 HOH WAT . 
F 6 HOH A 123 626 626 HOH WAT . 
F 6 HOH A 124 627 627 HOH WAT . 
F 6 HOH A 125 628 628 HOH WAT . 
F 6 HOH A 126 629 629 HOH WAT . 
F 6 HOH A 127 630 630 HOH WAT . 
F 6 HOH A 128 631 631 HOH WAT . 
F 6 HOH A 129 632 632 HOH WAT . 
F 6 HOH A 130 633 633 HOH WAT . 
F 6 HOH A 131 634 634 HOH WAT . 
F 6 HOH A 132 635 635 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . B 2 5.966 66.229 56.99 1 39.26 ? C1 NAG 499 A 1 
HETATM 2 C C2 NAG . . . B 2 6.766 66.663 58.121 1 41.1 ? C2 NAG 499 A 1 
HETATM 3 C C3 NAG . . . B 2 6.373 68.098 58.25 1 41.96 ? C3 NAG 499 A 1 
HETATM 4 C C4 NAG . . . B 2 6.65 68.902 56.984 1 42.16 ? C4 NAG 499 A 1 
HETATM 5 C C5 NAG . . . B 2 5.993 68.194 55.75 1 42.86 ? C5 NAG 499 A 1 
HETATM 6 C C6 NAG . . . B 2 6.451 68.771 54.419 1 43.2 ? C6 NAG 499 A 1 
HETATM 7 C C7 NAG . . . B 2 7.307 65.412 60.153 1 47.18 ? C7 NAG 499 A 1 
HETATM 8 C C8 NAG . . . B 2 6.715 64.708 61.349 1 47.67 ? C8 NAG 499 A 1 
HETATM 9 N N2 NAG . . . B 2 6.371 65.929 59.35 1 44.62 ? N2 NAG 499 A 1 
HETATM 10 O O3 NAG . . . B 2 7.069 68.684 59.375 1 44.11 ? O3 NAG 499 A 1 
HETATM 11 O O4 NAG . . . B 2 6.035 70.178 57.086 1 42.83 ? O4 NAG 499 A 1 
HETATM 12 O O5 NAG . . . B 2 6.338 66.801 55.774 1 41.71 ? O5 NAG 499 A 1 
HETATM 13 O O6 NAG . . . B 2 5.822 68.088 53.327 1 52.59 ? O6 NAG 499 A 1 
HETATM 14 O O7 NAG . . . B 2 8.52 65.491 59.963 1 51.02 ? O7 NAG 499 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           638 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           14 
#