data_1XDD # _model_server_result.job_id Vi3Husu3RS6z_eksyIEmww _model_server_result.datetime_utc '2024-11-14 17:29:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xdd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":312}' # _entry.id 1XDD # _exptl.entry_id 1XDD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XDD _cell.length_a 116.7 _cell.length_b 116.7 _cell.length_c 82.8 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XDD _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 16 A SER 139 1_555 C MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 A OG SER 18 A SER 141 1_555 C MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc3 A OD1 ASP 116 A ASP 239 1_555 C MG MG . A MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc4 C MG MG . A MG 312 1_555 G O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc5 C MG MG . A MG 312 1_555 G O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 C MG MG . A MG 312 1_555 G O HOH . A HOH 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc7 B OG SER 16 B SER 139 1_555 E MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc8 B OG SER 18 B SER 141 1_555 E MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 B OD1 ASP 116 B ASP 239 1_555 E MG MG . B MG 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc10 E MG MG . B MG 312 1_555 H O HOH . B HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 E MG MG . B MG 312 1_555 H O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc12 E MG MG . B MG 312 1_555 H O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XDD _atom_sites.fract_transf_matrix[1][1] 0.008569 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012077 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 312 1 MG MG . D 3 AAY A 1 401 1 AAY AAY . E 2 MG B 1 312 2 MG MG . F 3 AAY B 1 501 1 AAY AAY . G 4 HOH A 1 402 5 HOH HOH . G 4 HOH A 2 403 6 HOH HOH . G 4 HOH A 3 404 10 HOH HOH . G 4 HOH A 4 405 12 HOH HOH . G 4 HOH A 5 406 13 HOH HOH . G 4 HOH A 6 407 16 HOH HOH . G 4 HOH A 7 408 17 HOH HOH . G 4 HOH A 8 409 19 HOH HOH . G 4 HOH A 9 410 20 HOH HOH . G 4 HOH A 10 411 24 HOH HOH . G 4 HOH A 11 412 26 HOH HOH . G 4 HOH A 12 413 29 HOH HOH . G 4 HOH A 13 414 32 HOH HOH . G 4 HOH A 14 415 33 HOH HOH . G 4 HOH A 15 416 34 HOH HOH . G 4 HOH A 16 417 36 HOH HOH . G 4 HOH A 17 418 38 HOH HOH . G 4 HOH A 18 419 39 HOH HOH . G 4 HOH A 19 420 42 HOH HOH . G 4 HOH A 20 421 43 HOH HOH . G 4 HOH A 21 422 45 HOH HOH . G 4 HOH A 22 423 48 HOH HOH . G 4 HOH A 23 424 50 HOH HOH . G 4 HOH A 24 425 51 HOH HOH . G 4 HOH A 25 426 53 HOH HOH . G 4 HOH A 26 427 54 HOH HOH . G 4 HOH A 27 428 56 HOH HOH . G 4 HOH A 28 429 65 HOH HOH . G 4 HOH A 29 430 66 HOH HOH . G 4 HOH A 30 431 70 HOH HOH . G 4 HOH A 31 432 71 HOH HOH . G 4 HOH A 32 433 73 HOH HOH . G 4 HOH A 33 434 79 HOH HOH . G 4 HOH A 34 435 80 HOH HOH . G 4 HOH A 35 436 84 HOH HOH . G 4 HOH A 36 437 86 HOH HOH . G 4 HOH A 37 438 87 HOH HOH . G 4 HOH A 38 439 88 HOH HOH . G 4 HOH A 39 440 89 HOH HOH . G 4 HOH A 40 441 91 HOH HOH . G 4 HOH A 41 442 92 HOH HOH . G 4 HOH A 42 443 97 HOH HOH . G 4 HOH A 43 444 99 HOH HOH . G 4 HOH A 44 445 101 HOH HOH . G 4 HOH A 45 446 103 HOH HOH . G 4 HOH A 46 447 104 HOH HOH . G 4 HOH A 47 448 105 HOH HOH . G 4 HOH A 48 449 110 HOH HOH . G 4 HOH A 49 450 112 HOH HOH . G 4 HOH A 50 451 115 HOH HOH . G 4 HOH A 51 452 117 HOH HOH . G 4 HOH A 52 453 120 HOH HOH . G 4 HOH A 53 454 123 HOH HOH . G 4 HOH A 54 455 124 HOH HOH . G 4 HOH A 55 456 128 HOH HOH . G 4 HOH A 56 457 130 HOH HOH . G 4 HOH A 57 458 131 HOH HOH . G 4 HOH A 58 459 133 HOH HOH . G 4 HOH A 59 460 135 HOH HOH . G 4 HOH A 60 461 138 HOH HOH . G 4 HOH A 61 462 139 HOH HOH . G 4 HOH A 62 463 141 HOH HOH . G 4 HOH A 63 464 142 HOH HOH . G 4 HOH A 64 465 147 HOH HOH . G 4 HOH A 65 466 148 HOH HOH . G 4 HOH A 66 467 151 HOH HOH . G 4 HOH A 67 468 153 HOH HOH . G 4 HOH A 68 469 155 HOH HOH . G 4 HOH A 69 470 157 HOH HOH . G 4 HOH A 70 471 158 HOH HOH . G 4 HOH A 71 472 161 HOH HOH . G 4 HOH A 72 473 162 HOH HOH . G 4 HOH A 73 474 167 HOH HOH . G 4 HOH A 74 475 169 HOH HOH . G 4 HOH A 75 476 171 HOH HOH . G 4 HOH A 76 477 172 HOH HOH . G 4 HOH A 77 478 174 HOH HOH . G 4 HOH A 78 479 176 HOH HOH . G 4 HOH A 79 480 177 HOH HOH . G 4 HOH A 80 481 178 HOH HOH . G 4 HOH A 81 482 179 HOH HOH . G 4 HOH A 82 483 184 HOH HOH . G 4 HOH A 83 484 191 HOH HOH . G 4 HOH A 84 485 192 HOH HOH . G 4 HOH A 85 486 193 HOH HOH . G 4 HOH A 86 487 198 HOH HOH . G 4 HOH A 87 488 201 HOH HOH . G 4 HOH A 88 489 203 HOH HOH . G 4 HOH A 89 490 209 HOH HOH . G 4 HOH A 90 491 212 HOH HOH . G 4 HOH A 91 492 213 HOH HOH . G 4 HOH A 92 493 214 HOH HOH . G 4 HOH A 93 494 215 HOH HOH . G 4 HOH A 94 495 216 HOH HOH . G 4 HOH A 95 496 217 HOH HOH . G 4 HOH A 96 497 218 HOH HOH . G 4 HOH A 97 498 219 HOH HOH . G 4 HOH A 98 499 222 HOH HOH . G 4 HOH A 99 500 229 HOH HOH . G 4 HOH A 100 501 230 HOH HOH . G 4 HOH A 101 502 231 HOH HOH . G 4 HOH A 102 503 234 HOH HOH . G 4 HOH A 103 504 236 HOH HOH . G 4 HOH A 104 505 237 HOH HOH . G 4 HOH A 105 506 239 HOH HOH . G 4 HOH A 106 507 244 HOH HOH . G 4 HOH A 107 508 254 HOH HOH . G 4 HOH A 108 509 255 HOH HOH . G 4 HOH A 109 510 257 HOH HOH . G 4 HOH A 110 511 258 HOH HOH . G 4 HOH A 111 512 259 HOH HOH . G 4 HOH A 112 513 262 HOH HOH . G 4 HOH A 113 514 264 HOH HOH . G 4 HOH A 114 515 265 HOH HOH . G 4 HOH A 115 516 267 HOH HOH . G 4 HOH A 116 517 268 HOH HOH . G 4 HOH A 117 518 271 HOH HOH . G 4 HOH A 118 519 272 HOH HOH . G 4 HOH A 119 520 274 HOH HOH . G 4 HOH A 120 521 275 HOH HOH . G 4 HOH A 121 522 276 HOH HOH . H 4 HOH B 1 502 1 HOH HOH . H 4 HOH B 2 503 2 HOH HOH . H 4 HOH B 3 504 3 HOH HOH . H 4 HOH B 4 505 4 HOH HOH . H 4 HOH B 5 506 7 HOH HOH . H 4 HOH B 6 507 8 HOH HOH . H 4 HOH B 7 508 9 HOH HOH . H 4 HOH B 8 509 11 HOH HOH . H 4 HOH B 9 510 14 HOH HOH . H 4 HOH B 10 511 15 HOH HOH . H 4 HOH B 11 512 18 HOH HOH . H 4 HOH B 12 513 21 HOH HOH . H 4 HOH B 13 514 22 HOH HOH . H 4 HOH B 14 515 23 HOH HOH . H 4 HOH B 15 516 25 HOH HOH . H 4 HOH B 16 517 27 HOH HOH . H 4 HOH B 17 518 28 HOH HOH . H 4 HOH B 18 519 30 HOH HOH . H 4 HOH B 19 520 31 HOH HOH . H 4 HOH B 20 521 35 HOH HOH . H 4 HOH B 21 522 37 HOH HOH . H 4 HOH B 22 523 40 HOH HOH . H 4 HOH B 23 524 41 HOH HOH . H 4 HOH B 24 525 44 HOH HOH . H 4 HOH B 25 526 46 HOH HOH . H 4 HOH B 26 527 47 HOH HOH . H 4 HOH B 27 528 49 HOH HOH . H 4 HOH B 28 529 52 HOH HOH . H 4 HOH B 29 530 55 HOH HOH . H 4 HOH B 30 531 57 HOH HOH . H 4 HOH B 31 532 58 HOH HOH . H 4 HOH B 32 533 59 HOH HOH . H 4 HOH B 33 534 60 HOH HOH . H 4 HOH B 34 535 61 HOH HOH . H 4 HOH B 35 536 62 HOH HOH . H 4 HOH B 36 537 63 HOH HOH . H 4 HOH B 37 538 64 HOH HOH . H 4 HOH B 38 539 67 HOH HOH . H 4 HOH B 39 540 68 HOH HOH . H 4 HOH B 40 541 69 HOH HOH . H 4 HOH B 41 542 72 HOH HOH . H 4 HOH B 42 543 74 HOH HOH . H 4 HOH B 43 544 75 HOH HOH . H 4 HOH B 44 545 76 HOH HOH . H 4 HOH B 45 546 77 HOH HOH . H 4 HOH B 46 547 78 HOH HOH . H 4 HOH B 47 548 81 HOH HOH . H 4 HOH B 48 549 82 HOH HOH . H 4 HOH B 49 550 83 HOH HOH . H 4 HOH B 50 551 85 HOH HOH . H 4 HOH B 51 552 90 HOH HOH . H 4 HOH B 52 553 93 HOH HOH . H 4 HOH B 53 554 94 HOH HOH . H 4 HOH B 54 555 95 HOH HOH . H 4 HOH B 55 556 96 HOH HOH . H 4 HOH B 56 557 98 HOH HOH . H 4 HOH B 57 558 100 HOH HOH . H 4 HOH B 58 559 102 HOH HOH . H 4 HOH B 59 560 106 HOH HOH . H 4 HOH B 60 561 107 HOH HOH . H 4 HOH B 61 562 108 HOH HOH . H 4 HOH B 62 563 109 HOH HOH . H 4 HOH B 63 564 111 HOH HOH . H 4 HOH B 64 565 113 HOH HOH . H 4 HOH B 65 566 114 HOH HOH . H 4 HOH B 66 567 116 HOH HOH . H 4 HOH B 67 568 118 HOH HOH . H 4 HOH B 68 569 119 HOH HOH . H 4 HOH B 69 570 121 HOH HOH . H 4 HOH B 70 571 122 HOH HOH . H 4 HOH B 71 572 125 HOH HOH . H 4 HOH B 72 573 126 HOH HOH . H 4 HOH B 73 574 127 HOH HOH . H 4 HOH B 74 575 129 HOH HOH . H 4 HOH B 75 576 132 HOH HOH . H 4 HOH B 76 577 134 HOH HOH . H 4 HOH B 77 578 136 HOH HOH . H 4 HOH B 78 579 137 HOH HOH . H 4 HOH B 79 580 140 HOH HOH . H 4 HOH B 80 581 143 HOH HOH . H 4 HOH B 81 582 144 HOH HOH . H 4 HOH B 82 583 145 HOH HOH . H 4 HOH B 83 584 146 HOH HOH . H 4 HOH B 84 585 149 HOH HOH . H 4 HOH B 85 586 150 HOH HOH . H 4 HOH B 86 587 152 HOH HOH . H 4 HOH B 87 588 154 HOH HOH . H 4 HOH B 88 589 156 HOH HOH . H 4 HOH B 89 590 159 HOH HOH . H 4 HOH B 90 591 160 HOH HOH . H 4 HOH B 91 592 163 HOH HOH . H 4 HOH B 92 593 164 HOH HOH . H 4 HOH B 93 594 165 HOH HOH . H 4 HOH B 94 595 166 HOH HOH . H 4 HOH B 95 596 168 HOH HOH . H 4 HOH B 96 597 170 HOH HOH . H 4 HOH B 97 598 173 HOH HOH . H 4 HOH B 98 599 175 HOH HOH . H 4 HOH B 99 600 180 HOH HOH . H 4 HOH B 100 601 181 HOH HOH . H 4 HOH B 101 602 182 HOH HOH . H 4 HOH B 102 603 183 HOH HOH . H 4 HOH B 103 604 185 HOH HOH . H 4 HOH B 104 605 186 HOH HOH . H 4 HOH B 105 606 187 HOH HOH . H 4 HOH B 106 607 188 HOH HOH . H 4 HOH B 107 608 189 HOH HOH . H 4 HOH B 108 609 190 HOH HOH . H 4 HOH B 109 610 194 HOH HOH . H 4 HOH B 110 611 195 HOH HOH . H 4 HOH B 111 612 196 HOH HOH . H 4 HOH B 112 613 197 HOH HOH . H 4 HOH B 113 614 199 HOH HOH . H 4 HOH B 114 615 200 HOH HOH . H 4 HOH B 115 616 202 HOH HOH . H 4 HOH B 116 617 204 HOH HOH . H 4 HOH B 117 618 205 HOH HOH . H 4 HOH B 118 619 206 HOH HOH . H 4 HOH B 119 620 207 HOH HOH . H 4 HOH B 120 621 208 HOH HOH . H 4 HOH B 121 622 210 HOH HOH . H 4 HOH B 122 623 211 HOH HOH . H 4 HOH B 123 624 220 HOH HOH . H 4 HOH B 124 625 221 HOH HOH . H 4 HOH B 125 626 223 HOH HOH . H 4 HOH B 126 627 224 HOH HOH . H 4 HOH B 127 628 225 HOH HOH . H 4 HOH B 128 629 226 HOH HOH . H 4 HOH B 129 630 227 HOH HOH . H 4 HOH B 130 631 228 HOH HOH . H 4 HOH B 131 632 232 HOH HOH . H 4 HOH B 132 633 233 HOH HOH . H 4 HOH B 133 634 235 HOH HOH . H 4 HOH B 134 635 238 HOH HOH . H 4 HOH B 135 636 240 HOH HOH . H 4 HOH B 136 637 241 HOH HOH . H 4 HOH B 137 638 242 HOH HOH . H 4 HOH B 138 639 243 HOH HOH . H 4 HOH B 139 640 245 HOH HOH . H 4 HOH B 140 641 246 HOH HOH . H 4 HOH B 141 642 247 HOH HOH . H 4 HOH B 142 643 248 HOH HOH . H 4 HOH B 143 644 249 HOH HOH . H 4 HOH B 144 645 250 HOH HOH . H 4 HOH B 145 646 251 HOH HOH . H 4 HOH B 146 647 252 HOH HOH . H 4 HOH B 147 648 253 HOH HOH . H 4 HOH B 148 649 256 HOH HOH . H 4 HOH B 149 650 260 HOH HOH . H 4 HOH B 150 651 261 HOH HOH . H 4 HOH B 151 652 263 HOH HOH . H 4 HOH B 152 653 266 HOH HOH . H 4 HOH B 153 654 269 HOH HOH . H 4 HOH B 154 655 270 HOH HOH . H 4 HOH B 155 656 273 HOH HOH . H 4 HOH B 156 657 277 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 44.333 _atom_site.Cartn_y 69.167 _atom_site.Cartn_z 35.545 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 28.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 312 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #