data_1XDF # _model_server_result.job_id AlBjA8biYvBB7yTtgKU2XQ _model_server_result.datetime_utc '2024-11-25 22:40:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xdf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1XDF # _exptl.entry_id 1XDF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XDF _cell.length_a 48.956 _cell.length_b 69.243 _cell.length_c 112.918 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XDF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E 1 1 B,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O PRO 31 A PRO 31 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 A O VAL 34 A VAL 34 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc3 A O GLU 35 A GLU 35 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc4 A O ILE 37 A ILE 37 1_555 C NA NA . A NA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc5 C NA NA . A NA 401 1_555 E O HOH . A HOH 473 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.789 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XDF _atom_sites.fract_transf_matrix[1][1] 0.020427 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008856 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 401 401 NA NA . D 3 EPE A 1 301 301 EPE EPE . E 4 HOH A 1 402 1 HOH HOH . E 4 HOH A 2 403 5 HOH HOH . E 4 HOH A 3 404 6 HOH HOH . E 4 HOH A 4 405 7 HOH HOH . E 4 HOH A 5 406 9 HOH HOH . E 4 HOH A 6 407 10 HOH HOH . E 4 HOH A 7 408 11 HOH HOH . E 4 HOH A 8 409 12 HOH HOH . E 4 HOH A 9 410 13 HOH HOH . E 4 HOH A 10 411 14 HOH HOH . E 4 HOH A 11 412 16 HOH HOH . E 4 HOH A 12 413 18 HOH HOH . E 4 HOH A 13 414 22 HOH HOH . E 4 HOH A 14 415 23 HOH HOH . E 4 HOH A 15 416 26 HOH HOH . E 4 HOH A 16 417 28 HOH HOH . E 4 HOH A 17 418 31 HOH HOH . E 4 HOH A 18 419 32 HOH HOH . E 4 HOH A 19 420 33 HOH HOH . E 4 HOH A 20 421 34 HOH HOH . E 4 HOH A 21 422 36 HOH HOH . E 4 HOH A 22 423 38 HOH HOH . E 4 HOH A 23 424 39 HOH HOH . E 4 HOH A 24 425 45 HOH HOH . E 4 HOH A 25 426 46 HOH HOH . E 4 HOH A 26 427 47 HOH HOH . E 4 HOH A 27 428 48 HOH HOH . E 4 HOH A 28 429 49 HOH HOH . E 4 HOH A 29 430 51 HOH HOH . E 4 HOH A 30 431 52 HOH HOH . E 4 HOH A 31 432 53 HOH HOH . E 4 HOH A 32 433 56 HOH HOH . E 4 HOH A 33 434 57 HOH HOH . E 4 HOH A 34 435 58 HOH HOH . E 4 HOH A 35 436 59 HOH HOH . E 4 HOH A 36 437 60 HOH HOH . E 4 HOH A 37 438 61 HOH HOH . E 4 HOH A 38 439 62 HOH HOH . E 4 HOH A 39 440 63 HOH HOH . E 4 HOH A 40 441 64 HOH HOH . E 4 HOH A 41 442 65 HOH HOH . E 4 HOH A 42 443 66 HOH HOH . E 4 HOH A 43 444 75 HOH HOH . E 4 HOH A 44 445 76 HOH HOH . E 4 HOH A 45 446 77 HOH HOH . E 4 HOH A 46 447 78 HOH HOH . E 4 HOH A 47 448 81 HOH HOH . E 4 HOH A 48 449 86 HOH HOH . E 4 HOH A 49 450 89 HOH HOH . E 4 HOH A 50 451 90 HOH HOH . E 4 HOH A 51 452 91 HOH HOH . E 4 HOH A 52 453 92 HOH HOH . E 4 HOH A 53 454 94 HOH HOH . E 4 HOH A 54 455 95 HOH HOH . E 4 HOH A 55 456 96 HOH HOH . E 4 HOH A 56 457 97 HOH HOH . E 4 HOH A 57 458 98 HOH HOH . E 4 HOH A 58 459 99 HOH HOH . E 4 HOH A 59 460 101 HOH HOH . E 4 HOH A 60 461 102 HOH HOH . E 4 HOH A 61 462 103 HOH HOH . E 4 HOH A 62 463 117 HOH HOH . E 4 HOH A 63 464 118 HOH HOH . E 4 HOH A 64 465 119 HOH HOH . E 4 HOH A 65 466 120 HOH HOH . E 4 HOH A 66 467 121 HOH HOH . E 4 HOH A 67 468 122 HOH HOH . E 4 HOH A 68 469 123 HOH HOH . E 4 HOH A 69 470 124 HOH HOH . E 4 HOH A 70 471 125 HOH HOH . E 4 HOH A 71 472 126 HOH HOH . E 4 HOH A 72 473 127 HOH HOH . E 4 HOH A 73 474 128 HOH HOH . E 4 HOH A 74 475 129 HOH HOH . E 4 HOH A 75 476 131 HOH HOH . E 4 HOH A 76 477 132 HOH HOH . E 4 HOH A 77 478 133 HOH HOH . E 4 HOH A 78 479 134 HOH HOH . E 4 HOH A 79 480 136 HOH HOH . E 4 HOH A 80 481 137 HOH HOH . E 4 HOH A 81 482 138 HOH HOH . E 4 HOH A 82 483 139 HOH HOH . E 4 HOH A 83 484 146 HOH HOH . E 4 HOH A 84 485 147 HOH HOH . E 4 HOH A 85 486 148 HOH HOH . E 4 HOH A 86 487 151 HOH HOH . E 4 HOH A 87 488 152 HOH HOH . E 4 HOH A 88 489 153 HOH HOH . E 4 HOH A 89 490 156 HOH HOH . E 4 HOH A 90 491 157 HOH HOH . E 4 HOH A 91 492 158 HOH HOH . E 4 HOH A 92 493 159 HOH HOH . E 4 HOH A 93 494 160 HOH HOH . E 4 HOH A 94 495 161 HOH HOH . E 4 HOH A 95 496 162 HOH HOH . E 4 HOH A 96 497 165 HOH HOH . E 4 HOH A 97 498 168 HOH HOH . E 4 HOH A 98 499 169 HOH HOH . E 4 HOH A 99 500 170 HOH HOH . E 4 HOH A 100 501 172 HOH HOH . E 4 HOH A 101 502 176 HOH HOH . E 4 HOH A 102 503 179 HOH HOH . E 4 HOH A 103 504 184 HOH HOH . E 4 HOH A 104 505 185 HOH HOH . E 4 HOH A 105 506 186 HOH HOH . E 4 HOH A 106 507 187 HOH HOH . E 4 HOH A 107 508 188 HOH HOH . E 4 HOH A 108 509 189 HOH HOH . E 4 HOH A 109 510 190 HOH HOH . E 4 HOH A 110 511 191 HOH HOH . E 4 HOH A 111 512 193 HOH HOH . E 4 HOH A 112 513 194 HOH HOH . E 4 HOH A 113 514 195 HOH HOH . E 4 HOH A 114 515 196 HOH HOH . E 4 HOH A 115 516 198 HOH HOH . E 4 HOH A 116 517 199 HOH HOH . E 4 HOH A 117 518 200 HOH HOH . E 4 HOH A 118 519 205 HOH HOH . E 4 HOH A 119 520 206 HOH HOH . E 4 HOH A 120 521 207 HOH HOH . E 4 HOH A 121 522 208 HOH HOH . E 4 HOH A 122 523 209 HOH HOH . E 4 HOH A 123 524 210 HOH HOH . E 4 HOH A 124 525 211 HOH HOH . E 4 HOH A 125 526 212 HOH HOH . E 4 HOH A 126 527 213 HOH HOH . E 4 HOH A 127 528 214 HOH HOH . E 4 HOH A 128 529 215 HOH HOH . E 4 HOH A 129 530 216 HOH HOH . E 4 HOH A 130 531 217 HOH HOH . E 4 HOH A 131 532 218 HOH HOH . E 4 HOH A 132 533 237 HOH HOH . E 4 HOH A 133 534 239 HOH HOH . E 4 HOH A 134 535 240 HOH HOH . E 4 HOH A 135 536 242 HOH HOH . E 4 HOH A 136 537 243 HOH HOH . E 4 HOH A 137 538 244 HOH HOH . E 4 HOH A 138 539 246 HOH HOH . E 4 HOH A 139 540 248 HOH HOH . E 4 HOH A 140 541 252 HOH HOH . E 4 HOH A 141 542 258 HOH HOH . E 4 HOH A 142 543 259 HOH HOH . E 4 HOH A 143 544 262 HOH HOH . E 4 HOH A 144 545 263 HOH HOH . E 4 HOH A 145 546 264 HOH HOH . E 4 HOH A 146 547 265 HOH HOH . E 4 HOH A 147 548 267 HOH HOH . E 4 HOH A 148 549 268 HOH HOH . E 4 HOH A 149 550 269 HOH HOH . E 4 HOH A 150 551 270 HOH HOH . E 4 HOH A 151 552 271 HOH HOH . E 4 HOH A 152 553 272 HOH HOH . E 4 HOH A 153 554 273 HOH HOH . E 4 HOH A 154 555 274 HOH HOH . E 4 HOH A 155 556 275 HOH HOH . E 4 HOH A 156 557 276 HOH HOH . E 4 HOH A 157 558 278 HOH HOH . F 4 HOH B 1 158 2 HOH HOH . F 4 HOH B 2 159 3 HOH HOH . F 4 HOH B 3 160 4 HOH HOH . F 4 HOH B 4 161 8 HOH HOH . F 4 HOH B 5 162 15 HOH HOH . F 4 HOH B 6 163 17 HOH HOH . F 4 HOH B 7 164 19 HOH HOH . F 4 HOH B 8 165 20 HOH HOH . F 4 HOH B 9 166 21 HOH HOH . F 4 HOH B 10 167 24 HOH HOH . F 4 HOH B 11 168 25 HOH HOH . F 4 HOH B 12 169 27 HOH HOH . F 4 HOH B 13 170 29 HOH HOH . F 4 HOH B 14 171 30 HOH HOH . F 4 HOH B 15 172 35 HOH HOH . F 4 HOH B 16 173 37 HOH HOH . F 4 HOH B 17 174 40 HOH HOH . F 4 HOH B 18 175 41 HOH HOH . F 4 HOH B 19 176 42 HOH HOH . F 4 HOH B 20 177 43 HOH HOH . F 4 HOH B 21 178 44 HOH HOH . F 4 HOH B 22 179 50 HOH HOH . F 4 HOH B 23 180 54 HOH HOH . F 4 HOH B 24 181 55 HOH HOH . F 4 HOH B 25 182 67 HOH HOH . F 4 HOH B 26 183 68 HOH HOH . F 4 HOH B 27 184 69 HOH HOH . F 4 HOH B 28 185 70 HOH HOH . F 4 HOH B 29 186 71 HOH HOH . F 4 HOH B 30 187 72 HOH HOH . F 4 HOH B 31 188 73 HOH HOH . F 4 HOH B 32 189 74 HOH HOH . F 4 HOH B 33 190 79 HOH HOH . F 4 HOH B 34 191 80 HOH HOH . F 4 HOH B 35 192 82 HOH HOH . F 4 HOH B 36 193 83 HOH HOH . F 4 HOH B 37 194 84 HOH HOH . F 4 HOH B 38 195 85 HOH HOH . F 4 HOH B 39 196 87 HOH HOH . F 4 HOH B 40 197 88 HOH HOH . F 4 HOH B 41 198 93 HOH HOH . F 4 HOH B 42 199 100 HOH HOH . F 4 HOH B 43 200 104 HOH HOH . F 4 HOH B 44 201 105 HOH HOH . F 4 HOH B 45 202 106 HOH HOH . F 4 HOH B 46 203 107 HOH HOH . F 4 HOH B 47 204 108 HOH HOH . F 4 HOH B 48 205 109 HOH HOH . F 4 HOH B 49 206 110 HOH HOH . F 4 HOH B 50 207 111 HOH HOH . F 4 HOH B 51 208 112 HOH HOH . F 4 HOH B 52 209 113 HOH HOH . F 4 HOH B 53 210 114 HOH HOH . F 4 HOH B 54 211 115 HOH HOH . F 4 HOH B 55 212 116 HOH HOH . F 4 HOH B 56 213 130 HOH HOH . F 4 HOH B 57 214 135 HOH HOH . F 4 HOH B 58 215 140 HOH HOH . F 4 HOH B 59 216 141 HOH HOH . F 4 HOH B 60 217 142 HOH HOH . F 4 HOH B 61 218 143 HOH HOH . F 4 HOH B 62 219 144 HOH HOH . F 4 HOH B 63 220 145 HOH HOH . F 4 HOH B 64 221 149 HOH HOH . F 4 HOH B 65 222 150 HOH HOH . F 4 HOH B 66 223 154 HOH HOH . F 4 HOH B 67 224 155 HOH HOH . F 4 HOH B 68 225 163 HOH HOH . F 4 HOH B 69 226 164 HOH HOH . F 4 HOH B 70 227 166 HOH HOH . F 4 HOH B 71 228 167 HOH HOH . F 4 HOH B 72 229 171 HOH HOH . F 4 HOH B 73 230 173 HOH HOH . F 4 HOH B 74 231 174 HOH HOH . F 4 HOH B 75 232 175 HOH HOH . F 4 HOH B 76 233 177 HOH HOH . F 4 HOH B 77 234 178 HOH HOH . F 4 HOH B 78 235 180 HOH HOH . F 4 HOH B 79 236 181 HOH HOH . F 4 HOH B 80 237 182 HOH HOH . F 4 HOH B 81 238 183 HOH HOH . F 4 HOH B 82 239 192 HOH HOH . F 4 HOH B 83 240 197 HOH HOH . F 4 HOH B 84 241 201 HOH HOH . F 4 HOH B 85 242 202 HOH HOH . F 4 HOH B 86 243 203 HOH HOH . F 4 HOH B 87 244 204 HOH HOH . F 4 HOH B 88 245 219 HOH HOH . F 4 HOH B 89 246 220 HOH HOH . F 4 HOH B 90 247 221 HOH HOH . F 4 HOH B 91 248 222 HOH HOH . F 4 HOH B 92 249 223 HOH HOH . F 4 HOH B 93 250 224 HOH HOH . F 4 HOH B 94 251 225 HOH HOH . F 4 HOH B 95 252 226 HOH HOH . F 4 HOH B 96 253 227 HOH HOH . F 4 HOH B 97 254 228 HOH HOH . F 4 HOH B 98 255 229 HOH HOH . F 4 HOH B 99 256 230 HOH HOH . F 4 HOH B 100 257 231 HOH HOH . F 4 HOH B 101 258 232 HOH HOH . F 4 HOH B 102 259 233 HOH HOH . F 4 HOH B 103 260 234 HOH HOH . F 4 HOH B 104 261 235 HOH HOH . F 4 HOH B 105 262 236 HOH HOH . F 4 HOH B 106 263 238 HOH HOH . F 4 HOH B 107 264 241 HOH HOH . F 4 HOH B 108 265 245 HOH HOH . F 4 HOH B 109 266 247 HOH HOH . F 4 HOH B 110 267 249 HOH HOH . F 4 HOH B 111 268 250 HOH HOH . F 4 HOH B 112 269 251 HOH HOH . F 4 HOH B 113 270 253 HOH HOH . F 4 HOH B 114 271 254 HOH HOH . F 4 HOH B 115 272 255 HOH HOH . F 4 HOH B 116 273 256 HOH HOH . F 4 HOH B 117 274 257 HOH HOH . F 4 HOH B 118 275 260 HOH HOH . F 4 HOH B 119 276 261 HOH HOH . F 4 HOH B 120 277 266 HOH HOH . F 4 HOH B 121 278 277 HOH HOH . F 4 HOH B 122 279 279 HOH HOH . F 4 HOH B 123 280 280 HOH HOH . F 4 HOH B 124 281 281 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 24.26 _atom_site.Cartn_y 16.848 _atom_site.Cartn_z 7.081 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #