data_1XDU # _model_server_result.job_id YaK7JygPz29GHqharNPDpw _model_server_result.datetime_utc '2025-07-08 04:30:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":421}' # _entry.id 1XDU # _exptl.entry_id 1XDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XDU _cell.length_a 62.758 _cell.length_b 86.813 _cell.length_c 117.395 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XDU _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 62.758 0 58.6975 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 30 A PRO 30 1_555 A N MSE 31 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C MSE 31 A MSE 31 1_555 A N ALA 32 A ALA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLY 95 A GLY 95 1_555 A N MSE 96 A MSE 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 96 A MSE 96 1_555 A N LEU 97 A LEU 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C LEU 162 A LEU 162 1_555 A N MSE 163 A MSE 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 163 A MSE 163 1_555 A N SER 164 A SER 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale7 A C GLY 195 A GLY 195 1_555 A N MSE 196 A MSE 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale8 A C MSE 196 A MSE 196 1_555 A N LEU 197 A LEU 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C ARG 307 A ARG 307 1_555 A N MSE 308 A MSE 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C MSE 308 A MSE 308 1_555 A N LEU 309 A LEU 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C PHE 311 A PHE 311 1_555 A N MSE 312 A MSE 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 A C MSE 312 A MSE 312 1_555 A N GLY 313 A GLY 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1XDU _atom_sites.fract_transf_matrix[1][1] 0.015934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008518 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 421 421 ACT ACT . C 3 SFG A 1 5635 5635 SFG SFG . D 4 HOH A 1 5636 2 HOH HOH . D 4 HOH A 2 5637 3 HOH HOH . D 4 HOH A 3 5638 4 HOH HOH . D 4 HOH A 4 5639 6 HOH HOH . D 4 HOH A 5 5640 7 HOH HOH . D 4 HOH A 6 5641 9 HOH HOH . D 4 HOH A 7 5642 10 HOH HOH . D 4 HOH A 8 5643 14 HOH HOH . D 4 HOH A 9 5644 15 HOH HOH . D 4 HOH A 10 5645 25 HOH HOH . D 4 HOH A 11 5646 29 HOH HOH . D 4 HOH A 12 5647 30 HOH HOH . D 4 HOH A 13 5648 36 HOH HOH . D 4 HOH A 14 5649 38 HOH HOH . D 4 HOH A 15 5650 46 HOH HOH . D 4 HOH A 16 5651 47 HOH HOH . D 4 HOH A 17 5652 48 HOH HOH . D 4 HOH A 18 5653 56 HOH HOH . D 4 HOH A 19 5654 58 HOH HOH . D 4 HOH A 20 5655 59 HOH HOH . D 4 HOH A 21 5656 61 HOH HOH . D 4 HOH A 22 5657 63 HOH HOH . D 4 HOH A 23 5658 64 HOH HOH . D 4 HOH A 24 5659 67 HOH HOH . D 4 HOH A 25 5660 69 HOH HOH . D 4 HOH A 26 5661 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . B 2 28.632 31.301 44.239 1 7.95 ? C ACT 421 A 1 HETATM 2 O O ACT . . . B 2 27.778 31.145 45.156 1 8.79 ? O ACT 421 A 1 HETATM 3 O OXT ACT . . . B 2 29.728 30.66 44.355 1 7.19 ? OXT ACT 421 A 1 HETATM 4 C CH3 ACT . . . B 2 28.342 32.2 43.065 1 7.71 ? CH3 ACT 421 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #