data_1XE8 # _model_server_result.job_id qBfowhuZaL225jYdOnL4wg _model_server_result.datetime_utc '2024-10-12 14:32:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xe8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 1XE8 # _exptl.entry_id 1XE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 135.127 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XE8 _cell.length_a 207.97 _cell.length_b 207.97 _cell.length_c 207.97 _cell.Z_PDB 144 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 211 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,G,H 1 1 C,F,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 42_654 -x+3/2,z+1/2,y-1/2 -1 0 0 0 0 1 0 1 0 311.955 103.985 -103.985 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 22 A PRO 22 1_555 A N MSE 23 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 23 A MSE 23 1_555 A N PRO 24 A PRO 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale3 A C THR 57 A THR 57 1_555 A N MSE 58 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C MSE 58 A MSE 58 1_555 A N GLU 59 A GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C GLU 72 A GLU 72 1_555 A N MSE 73 A MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 73 A MSE 73 1_555 A N VAL 74 A VAL 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 B C PRO 22 B PRO 22 1_555 B N MSE 23 B MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale8 B C MSE 23 B MSE 23 1_555 B N PRO 24 B PRO 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale9 B C THR 57 B THR 57 1_555 B N MSE 58 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 58 B MSE 58 1_555 B N GLU 59 B GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale11 B C GLU 72 B GLU 72 1_555 B N MSE 73 B MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 B C MSE 73 B MSE 73 1_555 B N VAL 74 B VAL 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 C C PRO 22 C PRO 22 1_555 C N MSE 23 C MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 C C MSE 23 C MSE 23 1_555 C N PRO 24 C PRO 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 C C THR 57 C THR 57 1_555 C N MSE 58 C MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale16 C C MSE 58 C MSE 58 1_555 C N GLU 59 C GLU 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale17 C C GLU 72 C GLU 72 1_555 C N MSE 73 C MSE 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 C C MSE 73 C MSE 73 1_555 C N VAL 74 C VAL 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? # _chem_comp.formula 'C5 H5 N5' _chem_comp.formula_weight 135.127 _chem_comp.id ADE _chem_comp.mon_nstd_flag . _chem_comp.name ADENINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XE8 _atom_sites.fract_transf_matrix[1][1] 0.004808 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004808 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ADE A 1 500 500 ADE ADE . E 3 CIT A 1 1102 1102 CIT CIT . F 4 GOL C 1 1901 1901 GOL GOL . G 5 HOH A 1 1103 1000 HOH HOH . G 5 HOH A 2 1104 1001 HOH HOH . G 5 HOH A 3 1105 1002 HOH HOH . G 5 HOH A 4 1106 1003 HOH HOH . G 5 HOH A 5 1107 1004 HOH HOH . G 5 HOH A 6 1108 1005 HOH HOH . G 5 HOH A 7 1109 1006 HOH HOH . G 5 HOH A 8 1110 1007 HOH HOH . G 5 HOH A 9 1111 1009 HOH HOH . G 5 HOH A 10 1112 1010 HOH HOH . G 5 HOH A 11 1113 1011 HOH HOH . G 5 HOH A 12 1114 1012 HOH HOH . G 5 HOH A 13 1115 1014 HOH HOH . G 5 HOH A 14 1116 1015 HOH HOH . G 5 HOH A 15 1117 1018 HOH HOH . G 5 HOH A 16 1118 1020 HOH HOH . G 5 HOH A 17 1119 1022 HOH HOH . G 5 HOH A 18 1120 1025 HOH HOH . G 5 HOH A 19 1121 1027 HOH HOH . G 5 HOH A 20 1122 1028 HOH HOH . G 5 HOH A 21 1123 1029 HOH HOH . G 5 HOH A 22 1124 1030 HOH HOH . G 5 HOH A 23 1125 1031 HOH HOH . G 5 HOH A 24 1126 1032 HOH HOH . G 5 HOH A 25 1127 1033 HOH HOH . G 5 HOH A 26 1128 1034 HOH HOH . G 5 HOH A 27 1129 1035 HOH HOH . G 5 HOH A 28 1130 1036 HOH HOH . G 5 HOH A 29 1131 1037 HOH HOH . G 5 HOH A 30 1132 1038 HOH HOH . G 5 HOH A 31 1133 1039 HOH HOH . G 5 HOH A 32 1134 1040 HOH HOH . G 5 HOH A 33 1135 3 HOH HOH . G 5 HOH A 34 1136 9 HOH HOH . G 5 HOH A 35 1137 20 HOH HOH . G 5 HOH A 36 1138 23 HOH HOH . G 5 HOH A 37 1139 24 HOH HOH . G 5 HOH A 38 1140 25 HOH HOH . G 5 HOH A 39 1141 34 HOH HOH . G 5 HOH A 40 1142 36 HOH HOH . G 5 HOH A 41 1143 41 HOH HOH . G 5 HOH A 42 1144 48 HOH HOH . G 5 HOH A 43 1145 51 HOH HOH . G 5 HOH A 44 1146 56 HOH HOH . G 5 HOH A 45 1147 58 HOH HOH . G 5 HOH A 46 1148 59 HOH HOH . G 5 HOH A 47 1149 61 HOH HOH . G 5 HOH A 48 1150 63 HOH HOH . G 5 HOH A 49 1151 68 HOH HOH . G 5 HOH A 50 1152 71 HOH HOH . G 5 HOH A 51 1153 73 HOH HOH . G 5 HOH A 52 1154 75 HOH HOH . G 5 HOH A 53 1155 88 HOH HOH . G 5 HOH A 54 1156 99 HOH HOH . G 5 HOH A 55 1157 101 HOH HOH . G 5 HOH A 56 1158 103 HOH HOH . G 5 HOH A 57 1159 104 HOH HOH . G 5 HOH A 58 1160 2000 HOH HOH . G 5 HOH A 59 1161 2001 HOH HOH . G 5 HOH A 60 1162 2002 HOH HOH . G 5 HOH A 61 1163 2003 HOH HOH . G 5 HOH A 62 1164 2004 HOH HOH . G 5 HOH A 63 1165 2005 HOH HOH . G 5 HOH A 64 1166 2006 HOH HOH . G 5 HOH A 65 1167 2007 HOH HOH . G 5 HOH A 66 1168 2009 HOH HOH . G 5 HOH A 67 1169 2100 HOH HOH . G 5 HOH A 68 1170 2101 HOH HOH . G 5 HOH A 69 1171 2102 HOH HOH . G 5 HOH A 70 1172 2104 HOH HOH . G 5 HOH A 71 1173 2105 HOH HOH . G 5 HOH A 72 1174 5001 HOH HOH . G 5 HOH A 73 1175 5002 HOH HOH . G 5 HOH A 74 1176 5025 HOH HOH . G 5 HOH A 75 1177 5026 HOH HOH . G 5 HOH A 76 1178 5027 HOH HOH . G 5 HOH A 77 1179 5028 HOH HOH . G 5 HOH A 78 1180 5029 HOH HOH . H 5 HOH B 1 1023 1023 HOH HOH . H 5 HOH B 2 1024 1024 HOH HOH . H 5 HOH B 3 1025 4 HOH HOH . H 5 HOH B 4 1026 7 HOH HOH . H 5 HOH B 5 1027 14 HOH HOH . H 5 HOH B 6 1028 15 HOH HOH . H 5 HOH B 7 1029 31 HOH HOH . H 5 HOH B 8 1030 32 HOH HOH . H 5 HOH B 9 1031 43 HOH HOH . H 5 HOH B 10 1032 50 HOH HOH . H 5 HOH B 11 1033 52 HOH HOH . H 5 HOH B 12 1034 53 HOH HOH . H 5 HOH B 13 1035 54 HOH HOH . H 5 HOH B 14 1036 64 HOH HOH . H 5 HOH B 15 1037 70 HOH HOH . H 5 HOH B 16 1038 72 HOH HOH . H 5 HOH B 17 1039 77 HOH HOH . H 5 HOH B 18 1040 93 HOH HOH . H 5 HOH B 19 1041 96 HOH HOH . H 5 HOH B 20 1042 105 HOH HOH . H 5 HOH B 21 1043 2107 HOH HOH . H 5 HOH B 22 1044 2108 HOH HOH . H 5 HOH B 23 1045 2109 HOH HOH . H 5 HOH B 24 1046 2110 HOH HOH . H 5 HOH B 25 1047 2113 HOH HOH . H 5 HOH B 26 1048 2114 HOH HOH . H 5 HOH B 27 1049 2115 HOH HOH . H 5 HOH B 28 1050 2116 HOH HOH . H 5 HOH B 29 1051 2117 HOH HOH . H 5 HOH B 30 1052 2118 HOH HOH . H 5 HOH B 31 1053 2121 HOH HOH . H 5 HOH B 32 1054 2122 HOH HOH . H 5 HOH B 33 1055 2123 HOH HOH . H 5 HOH B 34 1056 5000 HOH HOH . H 5 HOH B 35 1057 5010 HOH HOH . H 5 HOH B 36 1058 5011 HOH HOH . H 5 HOH B 37 1059 5012 HOH HOH . H 5 HOH B 38 1060 5013 HOH HOH . H 5 HOH B 39 1061 5032 HOH HOH . H 5 HOH B 40 1062 5040 HOH HOH . I 5 HOH C 1 1902 2 HOH HOH . I 5 HOH C 2 1903 5 HOH HOH . I 5 HOH C 3 1904 6 HOH HOH . I 5 HOH C 4 1905 8 HOH HOH . I 5 HOH C 5 1906 10 HOH HOH . I 5 HOH C 6 1907 11 HOH HOH . I 5 HOH C 7 1908 12 HOH HOH . I 5 HOH C 8 1909 13 HOH HOH . I 5 HOH C 9 1910 16 HOH HOH . I 5 HOH C 10 1911 18 HOH HOH . I 5 HOH C 11 1912 19 HOH HOH . I 5 HOH C 12 1913 21 HOH HOH . I 5 HOH C 13 1914 22 HOH HOH . I 5 HOH C 14 1915 26 HOH HOH . I 5 HOH C 15 1916 27 HOH HOH . I 5 HOH C 16 1917 28 HOH HOH . I 5 HOH C 17 1918 33 HOH HOH . I 5 HOH C 18 1919 35 HOH HOH . I 5 HOH C 19 1920 39 HOH HOH . I 5 HOH C 20 1921 49 HOH HOH . I 5 HOH C 21 1922 55 HOH HOH . I 5 HOH C 22 1923 62 HOH HOH . I 5 HOH C 23 1924 66 HOH HOH . I 5 HOH C 24 1925 67 HOH HOH . I 5 HOH C 25 1926 69 HOH HOH . I 5 HOH C 26 1927 78 HOH HOH . I 5 HOH C 27 1928 79 HOH HOH . I 5 HOH C 28 1929 80 HOH HOH . I 5 HOH C 29 1930 82 HOH HOH . I 5 HOH C 30 1931 83 HOH HOH . I 5 HOH C 31 1932 84 HOH HOH . I 5 HOH C 32 1933 86 HOH HOH . I 5 HOH C 33 1934 87 HOH HOH . I 5 HOH C 34 1935 91 HOH HOH . I 5 HOH C 35 1936 92 HOH HOH . I 5 HOH C 36 1937 97 HOH HOH . I 5 HOH C 37 1938 98 HOH HOH . I 5 HOH C 38 1939 2111 HOH HOH . I 5 HOH C 39 1940 2112 HOH HOH . I 5 HOH C 40 1941 2124 HOH HOH . I 5 HOH C 41 1942 2127 HOH HOH . I 5 HOH C 42 1943 2128 HOH HOH . I 5 HOH C 43 1944 2129 HOH HOH . I 5 HOH C 44 1945 2130 HOH HOH . I 5 HOH C 45 1946 5014 HOH HOH . I 5 HOH C 46 1947 5015 HOH HOH . I 5 HOH C 47 1948 5016 HOH HOH . I 5 HOH C 48 1949 5017 HOH HOH . I 5 HOH C 49 1950 5018 HOH HOH . I 5 HOH C 50 1951 5019 HOH HOH . I 5 HOH C 51 1952 5020 HOH HOH . I 5 HOH C 52 1953 5021 HOH HOH . I 5 HOH C 53 1954 5022 HOH HOH . I 5 HOH C 54 1955 5023 HOH HOH . I 5 HOH C 55 1956 5030 HOH HOH . I 5 HOH C 56 1957 5031 HOH HOH . I 5 HOH C 57 1958 5033 HOH HOH . I 5 HOH C 58 1959 5034 HOH HOH . I 5 HOH C 59 1960 5035 HOH HOH . I 5 HOH C 60 1961 5036 HOH HOH . I 5 HOH C 61 1962 5037 HOH HOH . I 5 HOH C 62 1963 5039 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 ADE . . . D 2 186.301 151.646 13.092 1 25.8 ? N9 ADE 500 A 1 HETATM 2 C C8 ADE . . . D 2 185.636 150.455 13.234 1 26.96 ? C8 ADE 500 A 1 HETATM 3 N N7 ADE . . . D 2 185.622 149.722 12.144 1 27.38 ? N7 ADE 500 A 1 HETATM 4 C C5 ADE . . . D 2 186.324 150.485 11.221 1 27.55 ? C5 ADE 500 A 1 HETATM 5 C C6 ADE . . . D 2 186.656 150.27 9.865 1 28.55 ? C6 ADE 500 A 1 HETATM 6 N N6 ADE . . . D 2 186.287 149.187 9.172 1 28.49 ? N6 ADE 500 A 1 HETATM 7 N N1 ADE . . . D 2 187.381 151.226 9.235 1 27.45 ? N1 ADE 500 A 1 HETATM 8 C C2 ADE . . . D 2 187.728 152.322 9.924 1 27.33 ? C2 ADE 500 A 1 HETATM 9 N N3 ADE . . . D 2 187.462 152.643 11.191 1 26.31 ? N3 ADE 500 A 1 HETATM 10 C C4 ADE . . . D 2 186.752 151.671 11.792 1 26.59 ? C4 ADE 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #