data_1XEF
#
_model_server_result.job_id            Ywwgxq6qps2_FZYEOE1D4Q 
_model_server_result.datetime_utc      '2024-11-20 15:30:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xef 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":2801}' 
#
_entry.id    1XEF 
#
_exptl.entry_id    1XEF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          110.68 
_cell.angle_gamma         90 
_cell.entry_id            1XEF 
_cell.length_a            44.926 
_cell.length_b            194.917 
_cell.length_c            63.706 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XEF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,M,N 1 1 
C,D,I,J,K,L,O,P 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 M O HOH . A HOH 160 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc2 M O HOH . A HOH 165 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc3 M O HOH . A HOH 171 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? 
metalc ? metalc4 A OG SER 43 A SER 509 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc5 F O3G ATP . A ATP 800 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? 
metalc ? metalc6 F O2B ATP . A ATP 800 1_555 E MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
metalc ? metalc7 N O HOH . B HOH 36 1_555 G MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? 
metalc ? metalc8 N O HOH . B HOH 162 1_555 G MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc9 N O HOH . B HOH 169 1_555 G MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc10 B OG SER 43 B SER 509 1_555 G MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc11 H O3G ATP . B ATP 1800 1_555 G MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.894 ? 
metalc ? metalc12 H O2B ATP . B ATP 1800 1_555 G MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc13 O O HOH . C HOH 137 1_555 I MG MG . C MG 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? 
metalc ? metalc14 O O HOH . C HOH 148 1_555 I MG MG . C MG 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc15 O O HOH . C HOH 166 1_555 I MG MG . C MG 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? 
metalc ? metalc16 C OG SER 43 C SER 509 1_555 I MG MG . C MG 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc17 J O3G ATP . C ATP 2800 1_555 I MG MG . C MG 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? 
metalc ? metalc18 J O2B ATP . C ATP 2800 1_555 I MG MG . C MG 2801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc19 P O HOH . D HOH 8 1_555 K MG MG . D MG 3801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc20 P O HOH . D HOH 147 1_555 K MG MG . D MG 3801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc21 P O HOH . D HOH 150 1_555 K MG MG . D MG 3801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc22 D OG SER 43 D SER 509 1_555 K MG MG . D MG 3801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc23 L O3G ATP . D ATP 3800 1_555 K MG MG . D MG 3801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
metalc ? metalc24 L O2B ATP . D ATP 3800 1_555 K MG MG . D MG 3801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1XEF 
_atom_sites.fract_transf_matrix[1][1]    0.022259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.008402 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00513 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016778 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 MG A 1 801 801 MG MG . 
F 3 ATP A 1 800 800 ATP ATP . 
G 2 MG B 1 1801 1801 MG MG . 
H 3 ATP B 1 1800 1800 ATP ATP . 
I 2 MG C 1 2801 2801 MG MG . 
J 3 ATP C 1 2800 2800 ATP ATP . 
K 2 MG D 1 3801 3801 MG MG . 
L 3 ATP D 1 3800 3800 ATP ATP . 
M 4 HOH A 1 7 7 HOH HOH . 
M 4 HOH A 2 11 11 HOH HOH . 
M 4 HOH A 3 18 18 HOH HOH . 
M 4 HOH A 4 22 22 HOH HOH . 
M 4 HOH A 5 23 23 HOH HOH . 
M 4 HOH A 6 25 25 HOH HOH . 
M 4 HOH A 7 28 28 HOH HOH . 
M 4 HOH A 8 32 32 HOH HOH . 
M 4 HOH A 9 33 33 HOH HOH . 
M 4 HOH A 10 35 35 HOH HOH . 
M 4 HOH A 11 42 42 HOH HOH . 
M 4 HOH A 12 45 45 HOH HOH . 
M 4 HOH A 13 47 47 HOH HOH . 
M 4 HOH A 14 55 55 HOH HOH . 
M 4 HOH A 15 58 58 HOH HOH . 
M 4 HOH A 16 62 62 HOH HOH . 
M 4 HOH A 17 64 64 HOH HOH . 
M 4 HOH A 18 66 66 HOH HOH . 
M 4 HOH A 19 74 74 HOH HOH . 
M 4 HOH A 20 78 78 HOH HOH . 
M 4 HOH A 21 80 80 HOH HOH . 
M 4 HOH A 22 81 81 HOH HOH . 
M 4 HOH A 23 83 83 HOH HOH . 
M 4 HOH A 24 94 94 HOH HOH . 
M 4 HOH A 25 96 96 HOH HOH . 
M 4 HOH A 26 103 103 HOH HOH . 
M 4 HOH A 27 108 108 HOH HOH . 
M 4 HOH A 28 120 120 HOH HOH . 
M 4 HOH A 29 123 123 HOH HOH . 
M 4 HOH A 30 124 124 HOH HOH . 
M 4 HOH A 31 127 127 HOH HOH . 
M 4 HOH A 32 132 132 HOH HOH . 
M 4 HOH A 33 138 138 HOH HOH . 
M 4 HOH A 34 140 140 HOH HOH . 
M 4 HOH A 35 144 144 HOH HOH . 
M 4 HOH A 36 158 158 HOH HOH . 
M 4 HOH A 37 159 159 HOH HOH . 
M 4 HOH A 38 160 160 HOH HOH . 
M 4 HOH A 39 165 165 HOH HOH . 
M 4 HOH A 40 171 171 HOH HOH . 
N 4 HOH B 1 3 3 HOH HOH . 
N 4 HOH B 2 4 4 HOH HOH . 
N 4 HOH B 3 12 12 HOH HOH . 
N 4 HOH B 4 15 15 HOH HOH . 
N 4 HOH B 5 19 19 HOH HOH . 
N 4 HOH B 6 30 30 HOH HOH . 
N 4 HOH B 7 36 36 HOH HOH . 
N 4 HOH B 8 37 37 HOH HOH . 
N 4 HOH B 9 40 40 HOH HOH . 
N 4 HOH B 10 41 41 HOH HOH . 
N 4 HOH B 11 43 43 HOH HOH . 
N 4 HOH B 12 46 46 HOH HOH . 
N 4 HOH B 13 50 50 HOH HOH . 
N 4 HOH B 14 53 53 HOH HOH . 
N 4 HOH B 15 54 54 HOH HOH . 
N 4 HOH B 16 63 63 HOH HOH . 
N 4 HOH B 17 69 69 HOH HOH . 
N 4 HOH B 18 75 75 HOH HOH . 
N 4 HOH B 19 77 77 HOH HOH . 
N 4 HOH B 20 82 82 HOH HOH . 
N 4 HOH B 21 84 84 HOH HOH . 
N 4 HOH B 22 85 85 HOH HOH . 
N 4 HOH B 23 86 86 HOH HOH . 
N 4 HOH B 24 87 87 HOH HOH . 
N 4 HOH B 25 89 89 HOH HOH . 
N 4 HOH B 26 90 90 HOH HOH . 
N 4 HOH B 27 92 92 HOH HOH . 
N 4 HOH B 28 97 97 HOH HOH . 
N 4 HOH B 29 101 101 HOH HOH . 
N 4 HOH B 30 102 102 HOH HOH . 
N 4 HOH B 31 106 106 HOH HOH . 
N 4 HOH B 32 107 107 HOH HOH . 
N 4 HOH B 33 109 109 HOH HOH . 
N 4 HOH B 34 110 110 HOH HOH . 
N 4 HOH B 35 111 111 HOH HOH . 
N 4 HOH B 36 119 119 HOH HOH . 
N 4 HOH B 37 126 126 HOH HOH . 
N 4 HOH B 38 128 128 HOH HOH . 
N 4 HOH B 39 129 129 HOH HOH . 
N 4 HOH B 40 134 134 HOH HOH . 
N 4 HOH B 41 135 135 HOH HOH . 
N 4 HOH B 42 141 141 HOH HOH . 
N 4 HOH B 43 142 142 HOH HOH . 
N 4 HOH B 44 145 145 HOH HOH . 
N 4 HOH B 45 152 152 HOH HOH . 
N 4 HOH B 46 153 153 HOH HOH . 
N 4 HOH B 47 156 156 HOH HOH . 
N 4 HOH B 48 157 157 HOH HOH . 
N 4 HOH B 49 161 161 HOH HOH . 
N 4 HOH B 50 162 162 HOH HOH . 
N 4 HOH B 51 164 164 HOH HOH . 
N 4 HOH B 52 167 167 HOH HOH . 
N 4 HOH B 53 169 169 HOH HOH . 
N 4 HOH B 54 170 170 HOH HOH . 
O 4 HOH C 1 1 1 HOH HOH . 
O 4 HOH C 2 2 2 HOH HOH . 
O 4 HOH C 3 6 6 HOH HOH . 
O 4 HOH C 4 9 9 HOH HOH . 
O 4 HOH C 5 13 13 HOH HOH . 
O 4 HOH C 6 14 14 HOH HOH . 
O 4 HOH C 7 17 17 HOH HOH . 
O 4 HOH C 8 20 20 HOH HOH . 
O 4 HOH C 9 21 21 HOH HOH . 
O 4 HOH C 10 26 26 HOH HOH . 
O 4 HOH C 11 29 29 HOH HOH . 
O 4 HOH C 12 44 44 HOH HOH . 
O 4 HOH C 13 48 48 HOH HOH . 
O 4 HOH C 14 51 51 HOH HOH . 
O 4 HOH C 15 52 52 HOH HOH . 
O 4 HOH C 16 56 56 HOH HOH . 
O 4 HOH C 17 57 57 HOH HOH . 
O 4 HOH C 18 59 59 HOH HOH . 
O 4 HOH C 19 60 60 HOH HOH . 
O 4 HOH C 20 61 61 HOH HOH . 
O 4 HOH C 21 65 65 HOH HOH . 
O 4 HOH C 22 67 67 HOH HOH . 
O 4 HOH C 23 71 71 HOH HOH . 
O 4 HOH C 24 72 72 HOH HOH . 
O 4 HOH C 25 73 73 HOH HOH . 
O 4 HOH C 26 76 76 HOH HOH . 
O 4 HOH C 27 79 79 HOH HOH . 
O 4 HOH C 28 91 91 HOH HOH . 
O 4 HOH C 29 100 100 HOH HOH . 
O 4 HOH C 30 104 104 HOH HOH . 
O 4 HOH C 31 112 112 HOH HOH . 
O 4 HOH C 32 113 113 HOH HOH . 
O 4 HOH C 33 121 121 HOH HOH . 
O 4 HOH C 34 125 125 HOH HOH . 
O 4 HOH C 35 131 131 HOH HOH . 
O 4 HOH C 36 136 136 HOH HOH . 
O 4 HOH C 37 137 137 HOH HOH . 
O 4 HOH C 38 139 139 HOH HOH . 
O 4 HOH C 39 143 143 HOH HOH . 
O 4 HOH C 40 146 146 HOH HOH . 
O 4 HOH C 41 148 148 HOH HOH . 
O 4 HOH C 42 151 151 HOH HOH . 
O 4 HOH C 43 154 154 HOH HOH . 
O 4 HOH C 44 155 155 HOH HOH . 
O 4 HOH C 45 166 166 HOH HOH . 
P 4 HOH D 1 5 5 HOH HOH . 
P 4 HOH D 2 8 8 HOH HOH . 
P 4 HOH D 3 10 10 HOH HOH . 
P 4 HOH D 4 16 16 HOH HOH . 
P 4 HOH D 5 24 24 HOH HOH . 
P 4 HOH D 6 27 27 HOH HOH . 
P 4 HOH D 7 31 31 HOH HOH . 
P 4 HOH D 8 34 34 HOH HOH . 
P 4 HOH D 9 38 38 HOH HOH . 
P 4 HOH D 10 39 39 HOH HOH . 
P 4 HOH D 11 49 49 HOH HOH . 
P 4 HOH D 12 68 68 HOH HOH . 
P 4 HOH D 13 70 70 HOH HOH . 
P 4 HOH D 14 88 88 HOH HOH . 
P 4 HOH D 15 93 93 HOH HOH . 
P 4 HOH D 16 95 95 HOH HOH . 
P 4 HOH D 17 98 98 HOH HOH . 
P 4 HOH D 18 99 99 HOH HOH . 
P 4 HOH D 19 105 105 HOH HOH . 
P 4 HOH D 20 114 114 HOH HOH . 
P 4 HOH D 21 115 115 HOH HOH . 
P 4 HOH D 22 116 116 HOH HOH . 
P 4 HOH D 23 117 117 HOH HOH . 
P 4 HOH D 24 118 118 HOH HOH . 
P 4 HOH D 25 122 122 HOH HOH . 
P 4 HOH D 26 130 130 HOH HOH . 
P 4 HOH D 27 133 133 HOH HOH . 
P 4 HOH D 28 147 147 HOH HOH . 
P 4 HOH D 29 149 149 HOH HOH . 
P 4 HOH D 30 150 150 HOH HOH . 
P 4 HOH D 31 163 163 HOH HOH . 
P 4 HOH D 32 168 168 HOH HOH . 
P 4 HOH D 33 172 172 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         I 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               19.31 
_atom_site.Cartn_y               42.709 
_atom_site.Cartn_z               6.622 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        35.07 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           2801 
_atom_site.auth_asym_id          C 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           384 
_model_server_stats.encode_time_ms          14 
_model_server_stats.element_count           1 
#