data_1XEX # _model_server_result.job_id e9RG2L11MFQzPOo8hiGdxw _model_server_result.datetime_utc '2024-11-24 10:37:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1001}' # _entry.id 1XEX # _exptl.entry_id 1XEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XEX _cell.length_a 102.6 _cell.length_b 102.6 _cell.length_c 87.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 153.9 -88.854206 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 40 A SER 40 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A OE1 GLN 145 A GLN 145 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 D O1G ATP . A ATP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 D O1B ATP . A ATP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 C MG MG . A MG 1002 1_555 E O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 C MG MG . A MG 1002 1_555 E O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1XEX _atom_sites.fract_transf_matrix[1][1] 0.009747 _atom_sites.fract_transf_matrix[1][2] 0.005627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1002 1002 MG MG . D 4 ATP A 1 1001 1001 ATP ATP . E 5 HOH A 1 1003 5 HOH HOH . E 5 HOH A 2 1004 9 HOH HOH . E 5 HOH A 3 1005 12 HOH HOH . E 5 HOH A 4 1006 13 HOH HOH . E 5 HOH A 5 1007 14 HOH HOH . E 5 HOH A 6 1008 16 HOH HOH . E 5 HOH A 7 1009 18 HOH HOH . E 5 HOH A 8 1010 19 HOH HOH . E 5 HOH A 9 1011 24 HOH HOH . E 5 HOH A 10 1012 26 HOH HOH . E 5 HOH A 11 1013 27 HOH HOH . E 5 HOH A 12 1014 30 HOH HOH . E 5 HOH A 13 1015 32 HOH HOH . E 5 HOH A 14 1016 33 HOH HOH . E 5 HOH A 15 1017 41 HOH HOH . E 5 HOH A 16 1018 43 HOH HOH . E 5 HOH A 17 1019 49 HOH HOH . E 5 HOH A 18 1020 52 HOH HOH . E 5 HOH A 19 1021 54 HOH HOH . E 5 HOH A 20 1022 55 HOH HOH . E 5 HOH A 21 1023 56 HOH HOH . E 5 HOH A 22 1024 57 HOH HOH . E 5 HOH A 23 1025 59 HOH HOH . E 5 HOH A 24 1026 61 HOH HOH . E 5 HOH A 25 1027 64 HOH HOH . E 5 HOH A 26 1028 66 HOH HOH . E 5 HOH A 27 1029 70 HOH HOH . E 5 HOH A 28 1030 71 HOH HOH . E 5 HOH A 29 1031 76 HOH HOH . E 5 HOH A 30 1032 81 HOH HOH . E 5 HOH A 31 1033 85 HOH HOH . E 5 HOH A 32 1034 87 HOH HOH . E 5 HOH A 33 1035 92 HOH HOH . E 5 HOH A 34 1036 94 HOH HOH . E 5 HOH A 35 1037 96 HOH HOH . E 5 HOH A 36 1038 98 HOH HOH . E 5 HOH A 37 1039 99 HOH HOH . E 5 HOH A 38 1040 100 HOH HOH . E 5 HOH A 39 1041 103 HOH HOH . E 5 HOH A 40 1042 109 HOH HOH . E 5 HOH A 41 1043 110 HOH HOH . E 5 HOH A 42 1044 113 HOH HOH . E 5 HOH A 43 1045 117 HOH HOH . E 5 HOH A 44 1046 119 HOH HOH . E 5 HOH A 45 1047 123 HOH HOH . E 5 HOH A 46 1048 125 HOH HOH . E 5 HOH A 47 1049 126 HOH HOH . E 5 HOH A 48 1050 134 HOH HOH . E 5 HOH A 49 1051 146 HOH HOH . E 5 HOH A 50 1052 147 HOH HOH . E 5 HOH A 51 1053 158 HOH HOH . E 5 HOH A 52 1054 163 HOH HOH . E 5 HOH A 53 1055 178 HOH HOH . E 5 HOH A 54 1056 198 HOH HOH . E 5 HOH A 55 1057 202 HOH HOH . E 5 HOH A 56 1058 203 HOH HOH . E 5 HOH A 57 1059 208 HOH HOH . E 5 HOH A 58 1060 217 HOH HOH . E 5 HOH A 59 1061 225 HOH HOH . E 5 HOH A 60 1062 236 HOH HOH . F 5 HOH B 1 1 1 HOH HOH . F 5 HOH B 2 2 2 HOH HOH . F 5 HOH B 3 3 3 HOH HOH . F 5 HOH B 4 4 4 HOH HOH . F 5 HOH B 5 6 6 HOH HOH . F 5 HOH B 6 7 7 HOH HOH . F 5 HOH B 7 8 8 HOH HOH . F 5 HOH B 8 10 10 HOH HOH . F 5 HOH B 9 11 11 HOH HOH . F 5 HOH B 10 15 15 HOH HOH . F 5 HOH B 11 17 17 HOH HOH . F 5 HOH B 12 20 20 HOH HOH . F 5 HOH B 13 21 21 HOH HOH . F 5 HOH B 14 22 22 HOH HOH . F 5 HOH B 15 23 23 HOH HOH . F 5 HOH B 16 25 25 HOH HOH . F 5 HOH B 17 28 28 HOH HOH . F 5 HOH B 18 29 29 HOH HOH . F 5 HOH B 19 36 36 HOH HOH . F 5 HOH B 20 37 37 HOH HOH . F 5 HOH B 21 39 39 HOH HOH . F 5 HOH B 22 42 42 HOH HOH . F 5 HOH B 23 44 44 HOH HOH . F 5 HOH B 24 45 45 HOH HOH . F 5 HOH B 25 46 46 HOH HOH . F 5 HOH B 26 47 47 HOH HOH . F 5 HOH B 27 48 48 HOH HOH . F 5 HOH B 28 58 58 HOH HOH . F 5 HOH B 29 62 62 HOH HOH . F 5 HOH B 30 63 63 HOH HOH . F 5 HOH B 31 73 73 HOH HOH . F 5 HOH B 32 77 77 HOH HOH . F 5 HOH B 33 80 80 HOH HOH . F 5 HOH B 34 82 82 HOH HOH . F 5 HOH B 35 89 89 HOH HOH . F 5 HOH B 36 90 90 HOH HOH . F 5 HOH B 37 93 93 HOH HOH . F 5 HOH B 38 106 106 HOH HOH . F 5 HOH B 39 111 111 HOH HOH . F 5 HOH B 40 112 112 HOH HOH . F 5 HOH B 41 114 114 HOH HOH . F 5 HOH B 42 115 115 HOH HOH . F 5 HOH B 43 116 116 HOH HOH . F 5 HOH B 44 120 120 HOH HOH . F 5 HOH B 45 122 122 HOH HOH . F 5 HOH B 46 127 127 HOH HOH . F 5 HOH B 47 129 129 HOH HOH . F 5 HOH B 48 130 130 HOH HOH . F 5 HOH B 49 132 132 HOH HOH . F 5 HOH B 50 136 136 HOH HOH . F 5 HOH B 51 140 140 HOH HOH . F 5 HOH B 52 142 142 HOH HOH . F 5 HOH B 53 145 145 HOH HOH . F 5 HOH B 54 167 167 HOH HOH . F 5 HOH B 55 170 170 HOH HOH . F 5 HOH B 56 171 171 HOH HOH . F 5 HOH B 57 174 174 HOH HOH . F 5 HOH B 58 177 177 HOH HOH . F 5 HOH B 59 185 185 HOH HOH . F 5 HOH B 60 189 189 HOH HOH . F 5 HOH B 61 192 192 HOH HOH . F 5 HOH B 62 199 199 HOH HOH . F 5 HOH B 63 215 215 HOH HOH . F 5 HOH B 64 218 218 HOH HOH . F 5 HOH B 65 219 219 HOH HOH . F 5 HOH B 66 221 221 HOH HOH . F 5 HOH B 67 229 229 HOH HOH . F 5 HOH B 68 235 235 HOH HOH . F 5 HOH B 69 240 240 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 77.141 -62.275 -5.901 1 31.64 ? PG ATP 1001 A 1 HETATM 2 O O1G ATP . . . D 4 76.785 -63.177 -4.823 1 27.14 ? O1G ATP 1001 A 1 HETATM 3 O O2G ATP . . . D 4 76.137 -62.128 -6.948 1 27.74 ? O2G ATP 1001 A 1 HETATM 4 O O3G ATP . . . D 4 77.615 -60.971 -5.369 1 27.9 ? O3G ATP 1001 A 1 HETATM 5 P PB ATP . . . D 4 79.782 -63.524 -6.139 1 32.34 ? PB ATP 1001 A 1 HETATM 6 O O1B ATP . . . D 4 79.564 -64.082 -4.754 1 26.72 ? O1B ATP 1001 A 1 HETATM 7 O O2B ATP . . . D 4 80.803 -62.466 -6.275 1 31.14 ? O2B ATP 1001 A 1 HETATM 8 O O3B ATP . . . D 4 78.356 -62.995 -6.7 1 32.94 ? O3B ATP 1001 A 1 HETATM 9 P PA ATP . . . D 4 80.525 -66.238 -6.788 1 33.78 ? PA ATP 1001 A 1 HETATM 10 O O1A ATP . . . D 4 81.762 -66.186 -6.001 1 34.44 ? O1A ATP 1001 A 1 HETATM 11 O O2A ATP . . . D 4 79.387 -66.986 -6.262 1 34.23 ? O2A ATP 1001 A 1 HETATM 12 O O3A ATP . . . D 4 80.155 -64.732 -7.068 1 34.35 ? O3A ATP 1001 A 1 HETATM 13 O O5' ATP . . . D 4 80.894 -66.801 -8.189 1 39.16 ? O5' ATP 1001 A 1 HETATM 14 C C5' ATP . . . D 4 79.994 -67.069 -9.245 1 44.82 ? C5' ATP 1001 A 1 HETATM 15 C C4' ATP . . . D 4 80.781 -67.245 -10.496 1 48.75 ? C4' ATP 1001 A 1 HETATM 16 O O4' ATP . . . D 4 81.727 -68.347 -10.312 1 49.66 ? O4' ATP 1001 A 1 HETATM 17 C C3' ATP . . . D 4 79.926 -67.584 -11.713 1 50.2 ? C3' ATP 1001 A 1 HETATM 18 O O3' ATP . . . D 4 80.172 -66.563 -12.696 1 53.58 ? O3' ATP 1001 A 1 HETATM 19 C C2' ATP . . . D 4 80.448 -68.929 -12.104 1 50.14 ? C2' ATP 1001 A 1 HETATM 20 O O2' ATP . . . D 4 80.478 -69.101 -13.498 1 53.25 ? O2' ATP 1001 A 1 HETATM 21 C C1' ATP . . . D 4 81.885 -69.013 -11.557 1 47.87 ? C1' ATP 1001 A 1 HETATM 22 N N9 ATP . . . D 4 82.309 -70.431 -11.349 1 45.39 ? N9 ATP 1001 A 1 HETATM 23 C C8 ATP . . . D 4 81.858 -71.347 -10.425 1 45.17 ? C8 ATP 1001 A 1 HETATM 24 N N7 ATP . . . D 4 82.41 -72.522 -10.492 1 42.27 ? N7 ATP 1001 A 1 HETATM 25 C C5 ATP . . . D 4 83.291 -72.378 -11.542 1 42.06 ? C5 ATP 1001 A 1 HETATM 26 C C6 ATP . . . D 4 84.214 -73.284 -12.144 1 42.64 ? C6 ATP 1001 A 1 HETATM 27 N N6 ATP . . . D 4 84.325 -74.534 -11.706 1 42.57 ? N6 ATP 1001 A 1 HETATM 28 N N1 ATP . . . D 4 84.972 -72.85 -13.182 1 42.02 ? N1 ATP 1001 A 1 HETATM 29 C C2 ATP . . . D 4 84.837 -71.582 -13.609 1 44.03 ? C2 ATP 1001 A 1 HETATM 30 N N3 ATP . . . D 4 84.001 -70.626 -13.132 1 41.5 ? N3 ATP 1001 A 1 HETATM 31 C C4 ATP . . . D 4 83.251 -71.106 -12.075 1 42.9 ? C4 ATP 1001 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #