data_1XEX # _model_server_result.job_id znukUj4FyTepE8fw_hKCCg _model_server_result.datetime_utc '2024-11-28 04:09:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 1XEX # _exptl.entry_id 1XEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XEX _cell.length_a 102.6 _cell.length_b 102.6 _cell.length_c 87.2 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_645 y+1,x-1,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 153.9 -88.854206 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 40 A SER 40 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 A OE1 GLN 145 A GLN 145 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc3 D O1G ATP . A ATP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 D O1B ATP . A ATP 1001 1_555 C MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc5 C MG MG . A MG 1002 1_555 E O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 C MG MG . A MG 1002 1_555 E O HOH . A HOH 1042 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XEX _atom_sites.fract_transf_matrix[1][1] 0.009747 _atom_sites.fract_transf_matrix[1][2] 0.005627 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1002 1002 MG MG . D 4 ATP A 1 1001 1001 ATP ATP . E 5 HOH A 1 1003 5 HOH HOH . E 5 HOH A 2 1004 9 HOH HOH . E 5 HOH A 3 1005 12 HOH HOH . E 5 HOH A 4 1006 13 HOH HOH . E 5 HOH A 5 1007 14 HOH HOH . E 5 HOH A 6 1008 16 HOH HOH . E 5 HOH A 7 1009 18 HOH HOH . E 5 HOH A 8 1010 19 HOH HOH . E 5 HOH A 9 1011 24 HOH HOH . E 5 HOH A 10 1012 26 HOH HOH . E 5 HOH A 11 1013 27 HOH HOH . E 5 HOH A 12 1014 30 HOH HOH . E 5 HOH A 13 1015 32 HOH HOH . E 5 HOH A 14 1016 33 HOH HOH . E 5 HOH A 15 1017 41 HOH HOH . E 5 HOH A 16 1018 43 HOH HOH . E 5 HOH A 17 1019 49 HOH HOH . E 5 HOH A 18 1020 52 HOH HOH . E 5 HOH A 19 1021 54 HOH HOH . E 5 HOH A 20 1022 55 HOH HOH . E 5 HOH A 21 1023 56 HOH HOH . E 5 HOH A 22 1024 57 HOH HOH . E 5 HOH A 23 1025 59 HOH HOH . E 5 HOH A 24 1026 61 HOH HOH . E 5 HOH A 25 1027 64 HOH HOH . E 5 HOH A 26 1028 66 HOH HOH . E 5 HOH A 27 1029 70 HOH HOH . E 5 HOH A 28 1030 71 HOH HOH . E 5 HOH A 29 1031 76 HOH HOH . E 5 HOH A 30 1032 81 HOH HOH . E 5 HOH A 31 1033 85 HOH HOH . E 5 HOH A 32 1034 87 HOH HOH . E 5 HOH A 33 1035 92 HOH HOH . E 5 HOH A 34 1036 94 HOH HOH . E 5 HOH A 35 1037 96 HOH HOH . E 5 HOH A 36 1038 98 HOH HOH . E 5 HOH A 37 1039 99 HOH HOH . E 5 HOH A 38 1040 100 HOH HOH . E 5 HOH A 39 1041 103 HOH HOH . E 5 HOH A 40 1042 109 HOH HOH . E 5 HOH A 41 1043 110 HOH HOH . E 5 HOH A 42 1044 113 HOH HOH . E 5 HOH A 43 1045 117 HOH HOH . E 5 HOH A 44 1046 119 HOH HOH . E 5 HOH A 45 1047 123 HOH HOH . E 5 HOH A 46 1048 125 HOH HOH . E 5 HOH A 47 1049 126 HOH HOH . E 5 HOH A 48 1050 134 HOH HOH . E 5 HOH A 49 1051 146 HOH HOH . E 5 HOH A 50 1052 147 HOH HOH . E 5 HOH A 51 1053 158 HOH HOH . E 5 HOH A 52 1054 163 HOH HOH . E 5 HOH A 53 1055 178 HOH HOH . E 5 HOH A 54 1056 198 HOH HOH . E 5 HOH A 55 1057 202 HOH HOH . E 5 HOH A 56 1058 203 HOH HOH . E 5 HOH A 57 1059 208 HOH HOH . E 5 HOH A 58 1060 217 HOH HOH . E 5 HOH A 59 1061 225 HOH HOH . E 5 HOH A 60 1062 236 HOH HOH . F 5 HOH B 1 1 1 HOH HOH . F 5 HOH B 2 2 2 HOH HOH . F 5 HOH B 3 3 3 HOH HOH . F 5 HOH B 4 4 4 HOH HOH . F 5 HOH B 5 6 6 HOH HOH . F 5 HOH B 6 7 7 HOH HOH . F 5 HOH B 7 8 8 HOH HOH . F 5 HOH B 8 10 10 HOH HOH . F 5 HOH B 9 11 11 HOH HOH . F 5 HOH B 10 15 15 HOH HOH . F 5 HOH B 11 17 17 HOH HOH . F 5 HOH B 12 20 20 HOH HOH . F 5 HOH B 13 21 21 HOH HOH . F 5 HOH B 14 22 22 HOH HOH . F 5 HOH B 15 23 23 HOH HOH . F 5 HOH B 16 25 25 HOH HOH . F 5 HOH B 17 28 28 HOH HOH . F 5 HOH B 18 29 29 HOH HOH . F 5 HOH B 19 36 36 HOH HOH . F 5 HOH B 20 37 37 HOH HOH . F 5 HOH B 21 39 39 HOH HOH . F 5 HOH B 22 42 42 HOH HOH . F 5 HOH B 23 44 44 HOH HOH . F 5 HOH B 24 45 45 HOH HOH . F 5 HOH B 25 46 46 HOH HOH . F 5 HOH B 26 47 47 HOH HOH . F 5 HOH B 27 48 48 HOH HOH . F 5 HOH B 28 58 58 HOH HOH . F 5 HOH B 29 62 62 HOH HOH . F 5 HOH B 30 63 63 HOH HOH . F 5 HOH B 31 73 73 HOH HOH . F 5 HOH B 32 77 77 HOH HOH . F 5 HOH B 33 80 80 HOH HOH . F 5 HOH B 34 82 82 HOH HOH . F 5 HOH B 35 89 89 HOH HOH . F 5 HOH B 36 90 90 HOH HOH . F 5 HOH B 37 93 93 HOH HOH . F 5 HOH B 38 106 106 HOH HOH . F 5 HOH B 39 111 111 HOH HOH . F 5 HOH B 40 112 112 HOH HOH . F 5 HOH B 41 114 114 HOH HOH . F 5 HOH B 42 115 115 HOH HOH . F 5 HOH B 43 116 116 HOH HOH . F 5 HOH B 44 120 120 HOH HOH . F 5 HOH B 45 122 122 HOH HOH . F 5 HOH B 46 127 127 HOH HOH . F 5 HOH B 47 129 129 HOH HOH . F 5 HOH B 48 130 130 HOH HOH . F 5 HOH B 49 132 132 HOH HOH . F 5 HOH B 50 136 136 HOH HOH . F 5 HOH B 51 140 140 HOH HOH . F 5 HOH B 52 142 142 HOH HOH . F 5 HOH B 53 145 145 HOH HOH . F 5 HOH B 54 167 167 HOH HOH . F 5 HOH B 55 170 170 HOH HOH . F 5 HOH B 56 171 171 HOH HOH . F 5 HOH B 57 174 174 HOH HOH . F 5 HOH B 58 177 177 HOH HOH . F 5 HOH B 59 185 185 HOH HOH . F 5 HOH B 60 189 189 HOH HOH . F 5 HOH B 61 192 192 HOH HOH . F 5 HOH B 62 199 199 HOH HOH . F 5 HOH B 63 215 215 HOH HOH . F 5 HOH B 64 218 218 HOH HOH . F 5 HOH B 65 219 219 HOH HOH . F 5 HOH B 66 221 221 HOH HOH . F 5 HOH B 67 229 229 HOH HOH . F 5 HOH B 68 235 235 HOH HOH . F 5 HOH B 69 240 240 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 77.759 _atom_site.Cartn_y -64.489 _atom_site.Cartn_z -3.636 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.8 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1002 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #