data_1XFA
#
_model_server_result.job_id            CyU4g4tqOLvby9n0J0SLkg 
_model_server_result.datetime_utc      '2024-11-26 14:25:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1}' 
#
_entry.id    1XFA 
#
_exptl.entry_id    1XFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XFA 
_cell.length_a            139.994 
_cell.length_b            139.994 
_cell.length_c            278.721 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H 1 1 
B,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2G ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc2 F O3G ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? 
metalc ? metalc3 F O1B ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc4 C MG MG . A MG 3 1_555 A OG1 THR 78 A THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.704 ? 
metalc ? metalc5 C MG MG . A MG 3 1_555 A OE1 GLN 106 A GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc6 J O3B ATP . B ATP 2 1_555 I MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc7 J O1G ATP . B ATP 2 1_555 I MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc8 I MG MG . B MG 4 1_555 B OG1 THR 78 B THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
metalc ? metalc9 I MG MG . B MG 4 1_555 B OE1 GLN 106 B GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 77 n n 
PG O2G ATP sing 78 n n 
PG O3G ATP sing 79 n n 
PG O3B ATP sing 80 n n 
O2G HOG2 ATP sing 81 n n 
O3G HOG3 ATP sing 82 n n 
PB O1B ATP doub 83 n n 
PB O2B ATP sing 84 n n 
PB O3B ATP sing 85 n n 
PB O3A ATP sing 86 n n 
O2B HOB2 ATP sing 87 n n 
PA O1A ATP doub 88 n n 
PA O2A ATP sing 89 n n 
PA O3A ATP sing 90 n n 
PA O5' ATP sing 91 n n 
O2A HOA2 ATP sing 92 n n 
O5' C5' ATP sing 93 n n 
C5' C4' ATP sing 94 n n 
C5' "H5'1" ATP sing 95 n n 
C5' "H5'2" ATP sing 96 n n 
C4' O4' ATP sing 97 n n 
C4' C3' ATP sing 98 n n 
C4' H4' ATP sing 99 n n 
O4' C1' ATP sing 100 n n 
C3' O3' ATP sing 101 n n 
C3' C2' ATP sing 102 n n 
C3' H3' ATP sing 103 n n 
O3' HO3' ATP sing 104 n n 
C2' O2' ATP sing 105 n n 
C2' C1' ATP sing 106 n n 
C2' H2' ATP sing 107 n n 
O2' HO2' ATP sing 108 n n 
C1' N9 ATP sing 109 n n 
C1' H1' ATP sing 110 n n 
N9 C8 ATP sing 111 n y 
N9 C4 ATP sing 112 n y 
C8 N7 ATP doub 113 n y 
C8 H8 ATP sing 114 n n 
N7 C5 ATP sing 115 n y 
C5 C6 ATP sing 116 n y 
C5 C4 ATP doub 117 n y 
C6 N6 ATP sing 118 n n 
C6 N1 ATP doub 119 n y 
N6 HN61 ATP sing 120 n n 
N6 HN62 ATP sing 121 n n 
N1 C2 ATP sing 122 n y 
C2 N3 ATP doub 123 n y 
C2 H2 ATP sing 124 n n 
N3 C4 ATP sing 125 n y 
#
_atom_sites.entry_id                     1XFA 
_atom_sites.fract_transf_matrix[1][1]    0.007143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 3 3 MG MG . 
D 3 CL A 1 5 5 CL CL . 
E 3 CL A 1 6 6 CL CL . 
F 4 ATP A 1 1 1 ATP ATP . 
G 5 ACY A 1 7 7 ACY ACY . 
H 5 ACY A 1 9 9 ACY ACY . 
I 2 MG B 1 4 4 MG MG . 
J 4 ATP B 1 2 2 ATP ATP . 
K 5 ACY B 1 8 8 ACY ACY . 
L 5 ACY B 1 10 10 ACY ACY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 4 7.727 -127.727 -164.259 1 91.14 ? PG ATP 1 A 1 
HETATM 2 O O1G ATP . . . F 4 7.139 -129.074 -164.084 1 86.41 ? O1G ATP 1 A 1 
HETATM 3 O O2G ATP . . . F 4 7.196 -126.673 -163.163 1 91.1 ? O2G ATP 1 A 1 
HETATM 4 O O3G ATP . . . F 4 7.376 -127.106 -165.699 1 89.25 ? O3G ATP 1 A 1 
HETATM 5 P PB ATP . . . F 4 10.126 -126.396 -164.661 1 98.84 ? PB ATP 1 A 1 
HETATM 6 O O1B ATP . . . F 4 9.457 -125.184 -164.142 1 99.85 ? O1B ATP 1 A 1 
HETATM 7 O O2B ATP . . . F 4 10.269 -126.548 -166.125 1 98.9 ? O2B ATP 1 A 1 
HETATM 8 O O3B ATP . . . F 4 9.331 -127.692 -164.137 1 95.22 ? O3B ATP 1 A 1 
HETATM 9 P PA ATP . . . F 4 11.733 -126.456 -162.357 1 103.64 ? PA ATP 1 A 1 
HETATM 10 O O1A ATP . . . F 4 12.378 -125.157 -162.059 1 103.3 ? O1A ATP 1 A 1 
HETATM 11 O O2A ATP . . . F 4 10.442 -126.761 -161.701 1 99.29 ? O2A ATP 1 A 1 
HETATM 12 O O3A ATP . . . F 4 11.566 -126.547 -163.955 1 101.85 ? O3A ATP 1 A 1 
HETATM 13 O O5' ATP . . . F 4 12.777 -127.64 -162.036 1 109.22 ? O5' ATP 1 A 1 
HETATM 14 C C5' ATP . . . F 4 13.097 -128.655 -162.993 1 118.05 ? C5' ATP 1 A 1 
HETATM 15 C C4' ATP . . . F 4 13.052 -130.035 -162.335 1 122.65 ? C4' ATP 1 A 1 
HETATM 16 O O4' ATP . . . F 4 13.731 -131.051 -163.097 1 125.51 ? O4' ATP 1 A 1 
HETATM 17 C C3' ATP . . . F 4 13.773 -129.982 -160.988 1 124.78 ? C3' ATP 1 A 1 
HETATM 18 O O3' ATP . . . F 4 12.847 -129.563 -159.983 1 125.39 ? O3' ATP 1 A 1 
HETATM 19 C C2' ATP . . . F 4 14.086 -131.466 -160.818 1 126.68 ? C2' ATP 1 A 1 
HETATM 20 O O2' ATP . . . F 4 12.875 -132.197 -160.611 1 124.92 ? O2' ATP 1 A 1 
HETATM 21 C C1' ATP . . . F 4 14.632 -131.75 -162.218 1 129.14 ? C1' ATP 1 A 1 
HETATM 22 N N9 ATP . . . F 4 16.003 -131.199 -162.384 1 134.82 ? N9 ATP 1 A 1 
HETATM 23 C C8 ATP . . . F 4 16.325 -129.936 -162.661 1 136.41 ? C8 ATP 1 A 1 
HETATM 24 N N7 ATP . . . F 4 17.649 -129.828 -162.78 1 138.3 ? N7 ATP 1 A 1 
HETATM 25 C C5 ATP . . . F 4 18.179 -131.031 -162.578 1 139.12 ? C5 ATP 1 A 1 
HETATM 26 C C6 ATP . . . F 4 19.473 -131.53 -162.607 1 139.59 ? C6 ATP 1 A 1 
HETATM 27 N N6 ATP . . . F 4 20.509 -130.73 -162.861 1 139.17 ? N6 ATP 1 A 1 
HETATM 28 N N1 ATP . . . F 4 19.679 -132.897 -162.378 1 139.67 ? N1 ATP 1 A 1 
HETATM 29 C C2 ATP . . . F 4 18.574 -133.723 -162.123 1 139.7 ? C2 ATP 1 A 1 
HETATM 30 N N3 ATP . . . F 4 17.356 -133.213 -162.102 1 138.86 ? N3 ATP 1 A 1 
HETATM 31 C C4 ATP . . . F 4 17.123 -131.907 -162.321 1 137.92 ? C4 ATP 1 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           330 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#