data_1XFA
#
_model_server_result.job_id            M2198EoW-9oD4N_5xcYmmg 
_model_server_result.datetime_utc      '2024-11-30 00:03:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xfa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2}' 
#
_entry.id    1XFA 
#
_exptl.entry_id    1XFA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XFA 
_cell.length_a            139.994 
_cell.length_b            139.994 
_cell.length_c            278.721 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XFA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H 1 1 
B,I,J,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O2G ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc2 F O3G ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.048 ? 
metalc ? metalc3 F O1B ATP . A ATP 1 1_555 C MG MG . A MG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc4 C MG MG . A MG 3 1_555 A OG1 THR 78 A THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.704 ? 
metalc ? metalc5 C MG MG . A MG 3 1_555 A OE1 GLN 106 A GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc6 J O3B ATP . B ATP 2 1_555 I MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? 
metalc ? metalc7 J O1G ATP . B ATP 2 1_555 I MG MG . B MG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc8 I MG MG . B MG 4 1_555 B OG1 THR 78 B THR 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.782 ? 
metalc ? metalc9 I MG MG . B MG 4 1_555 B OE1 GLN 106 B GLN 493 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 77 n n 
PG O2G ATP sing 78 n n 
PG O3G ATP sing 79 n n 
PG O3B ATP sing 80 n n 
O2G HOG2 ATP sing 81 n n 
O3G HOG3 ATP sing 82 n n 
PB O1B ATP doub 83 n n 
PB O2B ATP sing 84 n n 
PB O3B ATP sing 85 n n 
PB O3A ATP sing 86 n n 
O2B HOB2 ATP sing 87 n n 
PA O1A ATP doub 88 n n 
PA O2A ATP sing 89 n n 
PA O3A ATP sing 90 n n 
PA O5' ATP sing 91 n n 
O2A HOA2 ATP sing 92 n n 
O5' C5' ATP sing 93 n n 
C5' C4' ATP sing 94 n n 
C5' "H5'1" ATP sing 95 n n 
C5' "H5'2" ATP sing 96 n n 
C4' O4' ATP sing 97 n n 
C4' C3' ATP sing 98 n n 
C4' H4' ATP sing 99 n n 
O4' C1' ATP sing 100 n n 
C3' O3' ATP sing 101 n n 
C3' C2' ATP sing 102 n n 
C3' H3' ATP sing 103 n n 
O3' HO3' ATP sing 104 n n 
C2' O2' ATP sing 105 n n 
C2' C1' ATP sing 106 n n 
C2' H2' ATP sing 107 n n 
O2' HO2' ATP sing 108 n n 
C1' N9 ATP sing 109 n n 
C1' H1' ATP sing 110 n n 
N9 C8 ATP sing 111 n y 
N9 C4 ATP sing 112 n y 
C8 N7 ATP doub 113 n y 
C8 H8 ATP sing 114 n n 
N7 C5 ATP sing 115 n y 
C5 C6 ATP sing 116 n y 
C5 C4 ATP doub 117 n y 
C6 N6 ATP sing 118 n n 
C6 N1 ATP doub 119 n y 
N6 HN61 ATP sing 120 n n 
N6 HN62 ATP sing 121 n n 
N1 C2 ATP sing 122 n y 
C2 N3 ATP doub 123 n y 
C2 H2 ATP sing 124 n n 
N3 C4 ATP sing 125 n y 
#
_atom_sites.entry_id                     1XFA 
_atom_sites.fract_transf_matrix[1][1]    0.007143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 3 3 MG MG . 
D 3 CL A 1 5 5 CL CL . 
E 3 CL A 1 6 6 CL CL . 
F 4 ATP A 1 1 1 ATP ATP . 
G 5 ACY A 1 7 7 ACY ACY . 
H 5 ACY A 1 9 9 ACY ACY . 
I 2 MG B 1 4 4 MG MG . 
J 4 ATP B 1 2 2 ATP ATP . 
K 5 ACY B 1 8 8 ACY ACY . 
L 5 ACY B 1 10 10 ACY ACY . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 4 27.156 -147.527 -143.055 1 85.15 ? PG ATP 2 B 1 
HETATM 2 O O1G ATP . . . J 4 26.765 -147.571 -144.479 1 87.09 ? O1G ATP 2 B 1 
HETATM 3 O O2G ATP . . . J 4 28.468 -148.409 -142.755 1 85.92 ? O2G ATP 2 B 1 
HETATM 4 O O3G ATP . . . J 4 26.022 -148.14 -142.094 1 83.41 ? O3G ATP 2 B 1 
HETATM 5 P PB ATP . . . J 4 28.846 -145.65 -141.844 1 91.13 ? PB ATP 2 B 1 
HETATM 6 O O1B ATP . . . J 4 29.668 -144.868 -142.793 1 93.23 ? O1B ATP 2 B 1 
HETATM 7 O O2B ATP . . . J 4 29.42 -146.898 -141.295 1 91.97 ? O2B ATP 2 B 1 
HETATM 8 O O3B ATP . . . J 4 27.452 -146.024 -142.557 1 88.37 ? O3B ATP 2 B 1 
HETATM 9 P PA ATP . . . J 4 27.965 -143.172 -140.851 1 101.91 ? PA ATP 2 B 1 
HETATM 10 O O1A ATP . . . J 4 29.205 -142.365 -140.792 1 100.33 ? O1A ATP 2 B 1 
HETATM 11 O O2A ATP . . . J 4 27.124 -143.093 -142.066 1 98.67 ? O2A ATP 2 B 1 
HETATM 12 O O3A ATP . . . J 4 28.384 -144.709 -140.62 1 97.04 ? O3A ATP 2 B 1 
HETATM 13 O O5' ATP . . . J 4 27.053 -142.868 -139.557 1 108.33 ? O5' ATP 2 B 1 
HETATM 14 C C5' ATP . . . J 4 27.59 -142.318 -138.349 1 116.05 ? C5' ATP 2 B 1 
HETATM 15 C C4' ATP . . . J 4 26.727 -142.69 -137.139 1 121.83 ? C4' ATP 2 B 1 
HETATM 16 O O4' ATP . . . J 4 25.334 -142.373 -137.323 1 126.24 ? O4' ATP 2 B 1 
HETATM 17 C C3' ATP . . . J 4 26.779 -144.192 -136.855 1 124.2 ? C3' ATP 2 B 1 
HETATM 18 O O3' ATP . . . J 4 27.891 -144.476 -136.003 1 122.23 ? O3' ATP 2 B 1 
HETATM 19 C C2' ATP . . . J 4 25.481 -144.341 -136.064 1 127.23 ? C2' ATP 2 B 1 
HETATM 20 O O2' ATP . . . J 4 25.618 -143.709 -134.79 1 128.14 ? O2' ATP 2 B 1 
HETATM 21 C C1' ATP . . . J 4 24.544 -143.52 -136.952 1 130.34 ? C1' ATP 2 B 1 
HETATM 22 N N9 ATP . . . J 4 24.142 -144.241 -138.188 1 136.2 ? N9 ATP 2 B 1 
HETATM 23 C C8 ATP . . . J 4 24.724 -145.326 -138.704 1 138.12 ? C8 ATP 2 B 1 
HETATM 24 N N7 ATP . . . J 4 24.126 -145.669 -139.84 1 139.17 ? N7 ATP 2 B 1 
HETATM 25 C C5 ATP . . . J 4 23.139 -144.793 -140.057 1 139.6 ? C5 ATP 2 B 1 
HETATM 26 C C6 ATP . . . J 4 22.203 -144.653 -141.066 1 140.08 ? C6 ATP 2 B 1 
HETATM 27 N N6 ATP . . . J 4 22.191 -145.489 -142.107 1 139.47 ? N6 ATP 2 B 1 
HETATM 28 N N1 ATP . . . J 4 21.282 -143.6 -140.986 1 140.18 ? N1 ATP 2 B 1 
HETATM 29 C C2 ATP . . . J 4 21.339 -142.723 -139.893 1 139.86 ? C2 ATP 2 B 1 
HETATM 30 N N3 ATP . . . J 4 22.249 -142.888 -138.954 1 139.34 ? N3 ATP 2 B 1 
HETATM 31 C C4 ATP . . . J 4 23.152 -143.894 -139.001 1 138.76 ? C4 ATP 2 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           31 
#