data_1XFP # _model_server_result.job_id Qe4dxe7ZiM-yGr8qIahTpg _model_server_result.datetime_utc '2024-11-28 07:32:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xfp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 1XFP # _exptl.entry_id 1XFP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.74 _cell.angle_gamma 90 _cell.entry_id 1XFP _cell.length_a 128.294 _cell.length_b 72.334 _cell.length_c 38.766 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XFP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 33 A CYS 33 1_555 A SG CYS 109 A CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 6 L CYS 6 1_555 B SG CYS 127 L CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 30 L CYS 30 1_555 B SG CYS 115 L CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 64 L CYS 64 1_555 B SG CYS 80 L CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf6 B SG CYS 76 L CYS 76 1_555 B SG CYS 94 L CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 1XFP _atom_sites.fract_transf_matrix[1][1] 0.007795 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002344 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013825 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026937 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FMT A 1 403 403 FMT FMT . D 3 FMT L 1 402 402 FMT FMT . E 3 FMT L 1 404 404 FMT FMT . F 3 FMT L 1 405 405 FMT FMT . G 3 FMT L 1 406 406 FMT FMT . H 3 FMT L 1 407 407 FMT FMT . I 3 FMT L 1 408 408 FMT FMT . J 3 FMT L 1 409 409 FMT FMT . K 4 HOH A 1 404 6 HOH HOH . K 4 HOH A 2 405 17 HOH HOH . K 4 HOH A 3 406 20 HOH HOH . K 4 HOH A 4 407 22 HOH HOH . K 4 HOH A 5 408 23 HOH HOH . K 4 HOH A 6 409 30 HOH HOH . K 4 HOH A 7 410 39 HOH HOH . K 4 HOH A 8 411 40 HOH HOH . K 4 HOH A 9 412 41 HOH HOH . K 4 HOH A 10 413 44 HOH HOH . K 4 HOH A 11 414 49 HOH HOH . K 4 HOH A 12 415 50 HOH HOH . K 4 HOH A 13 416 51 HOH HOH . K 4 HOH A 14 417 55 HOH HOH . K 4 HOH A 15 418 59 HOH HOH . K 4 HOH A 16 419 65 HOH HOH . K 4 HOH A 17 420 66 HOH HOH . K 4 HOH A 18 421 69 HOH HOH . K 4 HOH A 19 422 72 HOH HOH . K 4 HOH A 20 423 73 HOH HOH . K 4 HOH A 21 424 74 HOH HOH . K 4 HOH A 22 425 79 HOH HOH . K 4 HOH A 23 426 80 HOH HOH . K 4 HOH A 24 427 82 HOH HOH . K 4 HOH A 25 428 83 HOH HOH . K 4 HOH A 26 429 87 HOH HOH . K 4 HOH A 27 430 91 HOH HOH . K 4 HOH A 28 431 92 HOH HOH . K 4 HOH A 29 432 95 HOH HOH . K 4 HOH A 30 433 97 HOH HOH . K 4 HOH A 31 434 98 HOH HOH . K 4 HOH A 32 435 99 HOH HOH . K 4 HOH A 33 436 100 HOH HOH . K 4 HOH A 34 437 102 HOH HOH . K 4 HOH A 35 438 103 HOH HOH . K 4 HOH A 36 439 104 HOH HOH . K 4 HOH A 37 440 110 HOH HOH . K 4 HOH A 38 441 111 HOH HOH . K 4 HOH A 39 442 112 HOH HOH . K 4 HOH A 40 443 113 HOH HOH . K 4 HOH A 41 444 114 HOH HOH . K 4 HOH A 42 445 122 HOH HOH . K 4 HOH A 43 446 124 HOH HOH . K 4 HOH A 44 447 126 HOH HOH . K 4 HOH A 45 448 130 HOH HOH . K 4 HOH A 46 449 133 HOH HOH . K 4 HOH A 47 450 141 HOH HOH . K 4 HOH A 48 451 144 HOH HOH . K 4 HOH A 49 452 145 HOH HOH . K 4 HOH A 50 453 148 HOH HOH . K 4 HOH A 51 454 151 HOH HOH . K 4 HOH A 52 455 153 HOH HOH . K 4 HOH A 53 456 155 HOH HOH . K 4 HOH A 54 457 156 HOH HOH . K 4 HOH A 55 458 157 HOH HOH . K 4 HOH A 56 459 159 HOH HOH . K 4 HOH A 57 460 163 HOH HOH . K 4 HOH A 58 461 164 HOH HOH . K 4 HOH A 59 462 165 HOH HOH . K 4 HOH A 60 463 167 HOH HOH . K 4 HOH A 61 464 168 HOH HOH . K 4 HOH A 62 465 169 HOH HOH . K 4 HOH A 63 466 170 HOH HOH . K 4 HOH A 64 467 172 HOH HOH . K 4 HOH A 65 468 175 HOH HOH . K 4 HOH A 66 469 176 HOH HOH . K 4 HOH A 67 470 178 HOH HOH . K 4 HOH A 68 471 180 HOH HOH . K 4 HOH A 69 472 182 HOH HOH . K 4 HOH A 70 473 185 HOH HOH . K 4 HOH A 71 474 186 HOH HOH . K 4 HOH A 72 475 190 HOH HOH . K 4 HOH A 73 476 194 HOH HOH . K 4 HOH A 74 477 201 HOH HOH . K 4 HOH A 75 478 203 HOH HOH . K 4 HOH A 76 479 204 HOH HOH . K 4 HOH A 77 480 206 HOH HOH . K 4 HOH A 78 481 209 HOH HOH . K 4 HOH A 79 482 210 HOH HOH . K 4 HOH A 80 483 213 HOH HOH . K 4 HOH A 81 484 218 HOH HOH . K 4 HOH A 82 485 220 HOH HOH . K 4 HOH A 83 486 222 HOH HOH . K 4 HOH A 84 487 242 HOH HOH . K 4 HOH A 85 488 243 HOH HOH . K 4 HOH A 86 489 248 HOH HOH . K 4 HOH A 87 490 250 HOH HOH . K 4 HOH A 88 491 252 HOH HOH . K 4 HOH A 89 492 257 HOH HOH . K 4 HOH A 90 493 260 HOH HOH . K 4 HOH A 91 494 283 HOH HOH . K 4 HOH A 92 495 288 HOH HOH . K 4 HOH A 93 496 311 HOH HOH . K 4 HOH A 94 497 312 HOH HOH . L 4 HOH L 1 410 1 HOH HOH . L 4 HOH L 2 411 2 HOH HOH . L 4 HOH L 3 412 4 HOH HOH . L 4 HOH L 4 413 5 HOH HOH . L 4 HOH L 5 414 7 HOH HOH . L 4 HOH L 6 415 8 HOH HOH . L 4 HOH L 7 416 9 HOH HOH . L 4 HOH L 8 417 10 HOH HOH . L 4 HOH L 9 418 11 HOH HOH . L 4 HOH L 10 419 13 HOH HOH . L 4 HOH L 11 420 15 HOH HOH . L 4 HOH L 12 421 16 HOH HOH . L 4 HOH L 13 422 18 HOH HOH . L 4 HOH L 14 423 21 HOH HOH . L 4 HOH L 15 424 24 HOH HOH . L 4 HOH L 16 425 26 HOH HOH . L 4 HOH L 17 426 27 HOH HOH . L 4 HOH L 18 427 28 HOH HOH . L 4 HOH L 19 428 32 HOH HOH . L 4 HOH L 20 429 33 HOH HOH . L 4 HOH L 21 430 34 HOH HOH . L 4 HOH L 22 431 35 HOH HOH . L 4 HOH L 23 432 36 HOH HOH . L 4 HOH L 24 433 37 HOH HOH . L 4 HOH L 25 434 38 HOH HOH . L 4 HOH L 26 435 42 HOH HOH . L 4 HOH L 27 436 43 HOH HOH . L 4 HOH L 28 437 45 HOH HOH . L 4 HOH L 29 438 46 HOH HOH . L 4 HOH L 30 439 47 HOH HOH . L 4 HOH L 31 440 52 HOH HOH . L 4 HOH L 32 441 54 HOH HOH . L 4 HOH L 33 442 56 HOH HOH . L 4 HOH L 34 443 57 HOH HOH . L 4 HOH L 35 444 58 HOH HOH . L 4 HOH L 36 445 60 HOH HOH . L 4 HOH L 37 446 61 HOH HOH . L 4 HOH L 38 447 62 HOH HOH . L 4 HOH L 39 448 63 HOH HOH . L 4 HOH L 40 449 64 HOH HOH . L 4 HOH L 41 450 67 HOH HOH . L 4 HOH L 42 451 68 HOH HOH . L 4 HOH L 43 452 70 HOH HOH . L 4 HOH L 44 453 71 HOH HOH . L 4 HOH L 45 454 75 HOH HOH . L 4 HOH L 46 455 77 HOH HOH . L 4 HOH L 47 456 78 HOH HOH . L 4 HOH L 48 457 81 HOH HOH . L 4 HOH L 49 458 84 HOH HOH . L 4 HOH L 50 459 85 HOH HOH . L 4 HOH L 51 460 86 HOH HOH . L 4 HOH L 52 461 88 HOH HOH . L 4 HOH L 53 462 89 HOH HOH . L 4 HOH L 54 463 90 HOH HOH . L 4 HOH L 55 464 93 HOH HOH . L 4 HOH L 56 465 94 HOH HOH . L 4 HOH L 57 466 96 HOH HOH . L 4 HOH L 58 467 106 HOH HOH . L 4 HOH L 59 468 107 HOH HOH . L 4 HOH L 60 469 109 HOH HOH . L 4 HOH L 61 470 115 HOH HOH . L 4 HOH L 62 471 116 HOH HOH . L 4 HOH L 63 472 117 HOH HOH . L 4 HOH L 64 473 118 HOH HOH . L 4 HOH L 65 474 120 HOH HOH . L 4 HOH L 66 475 121 HOH HOH . L 4 HOH L 67 476 123 HOH HOH . L 4 HOH L 68 477 125 HOH HOH . L 4 HOH L 69 478 127 HOH HOH . L 4 HOH L 70 479 129 HOH HOH . L 4 HOH L 71 480 132 HOH HOH . L 4 HOH L 72 481 134 HOH HOH . L 4 HOH L 73 482 135 HOH HOH . L 4 HOH L 74 483 136 HOH HOH . L 4 HOH L 75 484 137 HOH HOH . L 4 HOH L 76 485 139 HOH HOH . L 4 HOH L 77 486 140 HOH HOH . L 4 HOH L 78 487 142 HOH HOH . L 4 HOH L 79 488 143 HOH HOH . L 4 HOH L 80 489 147 HOH HOH . L 4 HOH L 81 490 149 HOH HOH . L 4 HOH L 82 491 150 HOH HOH . L 4 HOH L 83 492 160 HOH HOH . L 4 HOH L 84 493 161 HOH HOH . L 4 HOH L 85 494 162 HOH HOH . L 4 HOH L 86 495 173 HOH HOH . L 4 HOH L 87 496 177 HOH HOH . L 4 HOH L 88 497 192 HOH HOH . L 4 HOH L 89 498 193 HOH HOH . L 4 HOH L 90 499 195 HOH HOH . L 4 HOH L 91 500 196 HOH HOH . L 4 HOH L 92 501 197 HOH HOH . L 4 HOH L 93 502 198 HOH HOH . L 4 HOH L 94 503 199 HOH HOH . L 4 HOH L 95 504 202 HOH HOH . L 4 HOH L 96 505 205 HOH HOH . L 4 HOH L 97 506 208 HOH HOH . L 4 HOH L 98 507 211 HOH HOH . L 4 HOH L 99 508 212 HOH HOH . L 4 HOH L 100 509 214 HOH HOH . L 4 HOH L 101 510 217 HOH HOH . L 4 HOH L 102 511 223 HOH HOH . L 4 HOH L 103 512 229 HOH HOH . L 4 HOH L 104 513 240 HOH HOH . L 4 HOH L 105 514 246 HOH HOH . L 4 HOH L 106 515 253 HOH HOH . L 4 HOH L 107 516 262 HOH HOH . L 4 HOH L 108 517 269 HOH HOH . L 4 HOH L 109 518 274 HOH HOH . L 4 HOH L 110 519 276 HOH HOH . L 4 HOH L 111 520 278 HOH HOH . L 4 HOH L 112 521 285 HOH HOH . L 4 HOH L 113 522 299 HOH HOH . L 4 HOH L 114 523 310 HOH HOH . L 4 HOH L 115 524 313 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 3 49.977 -1.446 -5.274 1 25.51 ? C FMT 404 L 1 HETATM 2 O O1 FMT . . . E 3 49.198 -2.722 -5.033 1 19.21 ? O1 FMT 404 L 1 HETATM 3 O O2 FMT . . . E 3 51.287 -1.402 -4.454 1 26.89 ? O2 FMT 404 L 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 3 #