data_1XGM # _model_server_result.job_id 21PVagkmdnbrLjGA94f4Uw _model_server_result.datetime_utc '2025-01-09 16:43:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xgm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":296}' # _entry.id 1XGM # _exptl.entry_id 1XGM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.933 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COBALT (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.71 _cell.angle_gamma 90 _cell.entry_id 1XGM _cell.length_a 53.385 _cell.length_b 85.059 _cell.length_c 72.705 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XGM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 82 A ASP 82 1_555 D CO CO . A CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.959 ? metalc ? metalc2 A OD2 ASP 82 A ASP 82 1_555 D CO CO . A CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 A OD2 ASP 93 A ASP 93 1_555 C CO CO . A CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 A OD1 ASP 93 A ASP 93 1_555 D CO CO . A CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc5 A OD2 ASP 93 A ASP 93 1_555 D CO CO . A CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc6 A NE2 HIS 153 A HIS 153 1_555 C CO CO . A CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? metalc ? metalc7 A OE2 GLU 187 A GLU 187 1_555 C CO CO . A CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc8 A OE2 GLU 280 A GLU 280 1_555 C CO CO . A CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? metalc ? metalc9 A OE1 GLU 280 A GLU 280 1_555 D CO CO . A CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc10 B OD1 ASP 82 B ASP 82 1_555 F CO CO . B CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc11 B OD2 ASP 82 B ASP 82 1_555 F CO CO . B CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.967 ? metalc ? metalc12 B OD2 ASP 93 B ASP 93 1_555 E CO CO . B CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc13 B OD1 ASP 93 B ASP 93 1_555 F CO CO . B CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc14 B OD2 ASP 93 B ASP 93 1_555 F CO CO . B CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc15 B NE2 HIS 153 B HIS 153 1_555 E CO CO . B CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc16 B OE2 GLU 187 B GLU 187 1_555 E CO CO . B CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc17 B OE2 GLU 280 B GLU 280 1_555 E CO CO . B CO 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.951 ? metalc ? metalc18 B OE1 GLU 280 B GLU 280 1_555 F CO CO . B CO 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? # _chem_comp.formula 'Co 2' _chem_comp.formula_weight 58.933 _chem_comp.id CO _chem_comp.mon_nstd_flag . _chem_comp.name 'COBALT (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XGM _atom_sites.fract_transf_matrix[1][1] 0.018732 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005982 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011757 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014438 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CO A 1 296 1 CO CO . D 2 CO A 1 297 2 CO CO . E 2 CO B 1 296 1 CO CO . F 2 CO B 1 297 2 CO CO . G 3 HOH A 1 298 1 HOH HOH . G 3 HOH A 2 299 2 HOH HOH . G 3 HOH A 3 300 3 HOH HOH . G 3 HOH A 4 301 8 HOH HOH . G 3 HOH A 5 302 9 HOH HOH . H 3 HOH B 1 298 4 HOH HOH . H 3 HOH B 2 299 5 HOH HOH . H 3 HOH B 3 300 6 HOH HOH . H 3 HOH B 4 301 7 HOH HOH . H 3 HOH B 5 302 10 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CO _atom_site.label_atom_id CO _atom_site.label_comp_id CO _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x 11.378 _atom_site.Cartn_y 40.058 _atom_site.Cartn_z 5.539 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.85 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CO _atom_site.auth_comp_id CO _atom_site.auth_seq_id 296 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #