data_1XH5
#
_model_server_result.job_id            -WPkwSwbDACc12h-rqqp-w 
_model_server_result.datetime_utc      '2024-12-26 19:20:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xh5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":902}' 
#
_entry.id    1XH5 
#
_exptl.entry_id    1XH5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              90.121 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (R,R)-2,3-BUTANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XH5 
_cell.length_a            74.094 
_cell.length_b            76.806 
_cell.length_c            79.532 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XH5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale2 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C4 H10 O2' 
_chem_comp.formula_weight    90.121 
_chem_comp.id                BU3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (R,R)-2,3-BUTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O6 C3 BU3 sing 70 n n 
O6 HO6 BU3 sing 71 n n 
C3 C4 BU3 sing 72 n n 
C3 C2 BU3 sing 73 n n 
C3 H3 BU3 sing 74 n n 
C4 H41 BU3 sing 75 n n 
C4 H42 BU3 sing 76 n n 
C4 H43 BU3 sing 77 n n 
C2 O5 BU3 sing 78 n n 
C2 C1 BU3 sing 79 n n 
C2 H2 BU3 sing 80 n n 
O5 HO5 BU3 sing 81 n n 
C1 H11 BU3 sing 82 n n 
C1 H12 BU3 sing 83 n n 
C1 H13 BU3 sing 84 n n 
#
_atom_sites.entry_id                     1XH5 
_atom_sites.fract_transf_matrix[1][1]    0.013496 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01302 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012574 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 R68 A 1 1001 1 R68 R68 . 
D 4 BU3 A 1 901 901 BU3 BU3 . 
E 4 BU3 A 1 903 903 BU3 BU3 . 
F 4 BU3 B 1 902 902 BU3 BU3 . 
G 5 HOH A 1 1002 3 HOH HOH . 
G 5 HOH A 2 1003 2 HOH HOH . 
G 5 HOH A 3 1004 4 HOH HOH . 
G 5 HOH A 4 1005 6 HOH HOH . 
G 5 HOH A 5 1006 8 HOH HOH . 
G 5 HOH A 6 1007 9 HOH HOH . 
G 5 HOH A 7 1008 11 HOH HOH . 
G 5 HOH A 8 1009 12 HOH HOH . 
G 5 HOH A 9 1010 13 HOH HOH . 
G 5 HOH A 10 1011 15 HOH HOH . 
G 5 HOH A 11 1012 16 HOH HOH . 
G 5 HOH A 12 1013 20 HOH HOH . 
G 5 HOH A 13 1014 22 HOH HOH . 
G 5 HOH A 14 1015 23 HOH HOH . 
G 5 HOH A 15 1016 25 HOH HOH . 
G 5 HOH A 16 1017 27 HOH HOH . 
G 5 HOH A 17 1018 30 HOH HOH . 
G 5 HOH A 18 1019 32 HOH HOH . 
G 5 HOH A 19 1020 34 HOH HOH . 
G 5 HOH A 20 1021 36 HOH HOH . 
G 5 HOH A 21 1022 37 HOH HOH . 
G 5 HOH A 22 1023 38 HOH HOH . 
G 5 HOH A 23 1024 39 HOH HOH . 
G 5 HOH A 24 1025 40 HOH HOH . 
G 5 HOH A 25 1026 43 HOH HOH . 
G 5 HOH A 26 1027 45 HOH HOH . 
G 5 HOH A 27 1028 47 HOH HOH . 
G 5 HOH A 28 1029 48 HOH HOH . 
G 5 HOH A 29 1030 50 HOH HOH . 
G 5 HOH A 30 1031 52 HOH HOH . 
G 5 HOH A 31 1032 53 HOH HOH . 
G 5 HOH A 32 1033 54 HOH HOH . 
G 5 HOH A 33 1034 55 HOH HOH . 
G 5 HOH A 34 1035 57 HOH HOH . 
G 5 HOH A 35 1036 59 HOH HOH . 
G 5 HOH A 36 1037 101 HOH HOH . 
G 5 HOH A 37 1038 105 HOH HOH . 
G 5 HOH A 38 1039 106 HOH HOH . 
G 5 HOH A 39 1040 108 HOH HOH . 
G 5 HOH A 40 1041 109 HOH HOH . 
G 5 HOH A 41 1042 112 HOH HOH . 
G 5 HOH A 42 1043 113 HOH HOH . 
G 5 HOH A 43 1044 122 HOH HOH . 
G 5 HOH A 44 1045 123 HOH HOH . 
G 5 HOH A 45 1046 124 HOH HOH . 
G 5 HOH A 46 1047 127 HOH HOH . 
G 5 HOH A 47 1048 132 HOH HOH . 
G 5 HOH A 48 1049 134 HOH HOH . 
G 5 HOH A 49 1050 136 HOH HOH . 
G 5 HOH A 50 1051 137 HOH HOH . 
G 5 HOH A 51 1052 141 HOH HOH . 
G 5 HOH A 52 1053 147 HOH HOH . 
G 5 HOH A 53 1054 148 HOH HOH . 
G 5 HOH A 54 1055 162 HOH HOH . 
G 5 HOH A 55 1056 281 HOH HOH . 
G 5 HOH A 56 1057 225 HOH HOH . 
G 5 HOH A 57 1058 232 HOH HOH . 
G 5 HOH A 58 1059 239 HOH HOH . 
G 5 HOH A 59 1060 241 HOH HOH . 
G 5 HOH A 60 1061 242 HOH HOH . 
G 5 HOH A 61 1062 250 HOH HOH . 
G 5 HOH A 62 1063 259 HOH HOH . 
G 5 HOH A 63 1064 264 HOH HOH . 
G 5 HOH A 64 1065 265 HOH HOH . 
G 5 HOH A 65 1066 266 HOH HOH . 
G 5 HOH A 66 1067 294 HOH HOH . 
G 5 HOH A 67 1068 216 HOH HOH . 
G 5 HOH A 68 1069 219 HOH HOH . 
G 5 HOH A 69 1070 233 HOH HOH . 
G 5 HOH A 70 1071 302 HOH HOH . 
G 5 HOH A 71 1072 237 HOH HOH . 
G 5 HOH A 72 1073 238 HOH HOH . 
G 5 HOH A 73 1074 439 HOH HOH . 
G 5 HOH A 74 1075 442 HOH HOH . 
G 5 HOH A 75 1076 445 HOH HOH . 
G 5 HOH A 76 1077 446 HOH HOH . 
G 5 HOH A 77 1078 448 HOH HOH . 
G 5 HOH A 78 1079 449 HOH HOH . 
G 5 HOH A 79 1080 450 HOH HOH . 
G 5 HOH A 80 1081 451 HOH HOH . 
G 5 HOH A 81 1082 454 HOH HOH . 
G 5 HOH A 82 1083 503 HOH HOH . 
G 5 HOH A 83 1084 504 HOH HOH . 
G 5 HOH A 84 1085 515 HOH HOH . 
G 5 HOH A 85 1086 516 HOH HOH . 
G 5 HOH A 86 1087 517 HOH HOH . 
G 5 HOH A 87 1088 518 HOH HOH . 
G 5 HOH A 88 1089 523 HOH HOH . 
G 5 HOH A 89 1090 528 HOH HOH . 
G 5 HOH A 90 1091 529 HOH HOH . 
G 5 HOH A 91 1092 536 HOH HOH . 
G 5 HOH A 92 1093 540 HOH HOH . 
G 5 HOH A 93 1094 550 HOH HOH . 
G 5 HOH A 94 1095 556 HOH HOH . 
G 5 HOH A 95 1096 566 HOH HOH . 
G 5 HOH A 96 1097 577 HOH HOH . 
G 5 HOH A 97 1098 600 HOH HOH . 
G 5 HOH A 98 1099 588 HOH HOH . 
G 5 HOH A 99 1100 592 HOH HOH . 
G 5 HOH A 100 1101 579 HOH HOH . 
G 5 HOH A 101 1102 617 HOH HOH . 
G 5 HOH A 102 1103 613 HOH HOH . 
G 5 HOH A 103 1104 631 HOH HOH . 
G 5 HOH A 104 1105 632 HOH HOH . 
G 5 HOH A 105 1106 634 HOH HOH . 
G 5 HOH A 106 1107 635 HOH HOH . 
G 5 HOH A 107 1108 636 HOH HOH . 
G 5 HOH A 108 1109 641 HOH HOH . 
G 5 HOH A 109 1110 643 HOH HOH . 
G 5 HOH A 110 1111 644 HOH HOH . 
G 5 HOH A 111 1112 645 HOH HOH . 
G 5 HOH A 112 1113 651 HOH HOH . 
G 5 HOH A 113 1114 653 HOH HOH . 
G 5 HOH A 114 1115 660 HOH HOH . 
G 5 HOH A 115 1116 661 HOH HOH . 
G 5 HOH A 116 1117 664 HOH HOH . 
G 5 HOH A 117 1118 665 HOH HOH . 
G 5 HOH A 118 1119 669 HOH HOH . 
G 5 HOH A 119 1120 700 HOH HOH . 
G 5 HOH A 120 1121 701 HOH HOH . 
G 5 HOH A 121 1122 702 HOH HOH . 
G 5 HOH A 122 1123 703 HOH HOH . 
G 5 HOH A 123 1124 705 HOH HOH . 
G 5 HOH A 124 1125 709 HOH HOH . 
G 5 HOH A 125 1126 710 HOH HOH . 
G 5 HOH A 126 1127 712 HOH HOH . 
G 5 HOH A 127 1128 713 HOH HOH . 
G 5 HOH A 128 1129 717 HOH HOH . 
G 5 HOH A 129 1130 719 HOH HOH . 
G 5 HOH A 130 1131 733 HOH HOH . 
G 5 HOH A 131 1132 735 HOH HOH . 
G 5 HOH A 132 1133 737 HOH HOH . 
G 5 HOH A 133 1134 739 HOH HOH . 
G 5 HOH A 134 1135 741 HOH HOH . 
G 5 HOH A 135 1136 742 HOH HOH . 
G 5 HOH A 136 1137 743 HOH HOH . 
G 5 HOH A 137 1138 744 HOH HOH . 
G 5 HOH A 138 1139 745 HOH HOH . 
G 5 HOH A 139 1140 746 HOH HOH . 
G 5 HOH A 140 1141 747 HOH HOH . 
G 5 HOH A 141 1142 749 HOH HOH . 
G 5 HOH A 142 1143 750 HOH HOH . 
G 5 HOH A 143 1144 751 HOH HOH . 
G 5 HOH A 144 1145 752 HOH HOH . 
G 5 HOH A 145 1146 753 HOH HOH . 
G 5 HOH A 146 1147 754 HOH HOH . 
G 5 HOH A 147 1148 755 HOH HOH . 
G 5 HOH A 148 1149 756 HOH HOH . 
G 5 HOH A 149 1150 757 HOH HOH . 
G 5 HOH A 150 1151 758 HOH HOH . 
G 5 HOH A 151 1152 759 HOH HOH . 
G 5 HOH A 152 1153 760 HOH HOH . 
G 5 HOH A 153 1154 761 HOH HOH . 
G 5 HOH A 154 1155 762 HOH HOH . 
G 5 HOH A 155 1156 763 HOH HOH . 
G 5 HOH A 156 1157 764 HOH HOH . 
G 5 HOH A 157 1158 765 HOH HOH . 
G 5 HOH A 158 1159 767 HOH HOH . 
G 5 HOH A 159 1160 768 HOH HOH . 
G 5 HOH A 160 1161 769 HOH HOH . 
G 5 HOH A 161 1162 771 HOH HOH . 
G 5 HOH A 162 1163 772 HOH HOH . 
G 5 HOH A 163 1164 773 HOH HOH . 
G 5 HOH A 164 1165 774 HOH HOH . 
G 5 HOH A 165 1166 776 HOH HOH . 
G 5 HOH A 166 1167 777 HOH HOH . 
G 5 HOH A 167 1168 778 HOH HOH . 
G 5 HOH A 168 1169 779 HOH HOH . 
G 5 HOH A 169 1170 780 HOH HOH . 
G 5 HOH A 170 1171 781 HOH HOH . 
G 5 HOH A 171 1172 782 HOH HOH . 
G 5 HOH A 172 1173 783 HOH HOH . 
G 5 HOH A 173 1174 784 HOH HOH . 
G 5 HOH A 174 1175 786 HOH HOH . 
G 5 HOH A 175 1176 787 HOH HOH . 
G 5 HOH A 176 1177 788 HOH HOH . 
G 5 HOH A 177 1178 789 HOH HOH . 
G 5 HOH A 178 1179 790 HOH HOH . 
G 5 HOH A 179 1180 791 HOH HOH . 
G 5 HOH A 180 1181 793 HOH HOH . 
G 5 HOH A 181 1182 795 HOH HOH . 
G 5 HOH A 182 1183 797 HOH HOH . 
G 5 HOH A 183 1184 799 HOH HOH . 
G 5 HOH A 184 1185 812 HOH HOH . 
G 5 HOH A 185 1186 819 HOH HOH . 
G 5 HOH A 186 1187 846 HOH HOH . 
G 5 HOH A 187 1188 852 HOH HOH . 
G 5 HOH A 188 1189 854 HOH HOH . 
G 5 HOH A 189 1190 856 HOH HOH . 
G 5 HOH A 190 1191 858 HOH HOH . 
G 5 HOH A 191 1192 860 HOH HOH . 
G 5 HOH A 192 1193 862 HOH HOH . 
G 5 HOH A 193 1194 863 HOH HOH . 
G 5 HOH A 194 1195 864 HOH HOH . 
H 5 HOH B 1 903 1 HOH HOH . 
H 5 HOH B 2 904 5 HOH HOH . 
H 5 HOH B 3 905 14 HOH HOH . 
H 5 HOH B 4 906 19 HOH HOH . 
H 5 HOH B 5 907 21 HOH HOH . 
H 5 HOH B 6 908 116 HOH HOH . 
H 5 HOH B 7 909 149 HOH HOH . 
H 5 HOH B 8 910 300 HOH HOH . 
H 5 HOH B 9 911 507 HOH HOH . 
H 5 HOH B 10 912 526 HOH HOH . 
H 5 HOH B 11 913 595 HOH HOH . 
H 5 HOH B 12 914 578 HOH HOH . 
H 5 HOH B 13 915 658 HOH HOH . 
H 5 HOH B 14 916 708 HOH HOH . 
H 5 HOH B 15 917 711 HOH HOH . 
H 5 HOH B 16 918 715 HOH HOH . 
H 5 HOH B 17 919 731 HOH HOH . 
H 5 HOH B 18 920 740 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O6 BU3 . . . F 4 22.946 3.294 10.46 1 31.19 ? O6 BU3 902 B 1 
HETATM 2 C C3 BU3 . . . F 4 22.652 4.114 9.315 1 37.54 ? C3 BU3 902 B 1 
HETATM 3 C C4 BU3 . . . F 4 23.009 3.419 7.97 1 37.17 ? C4 BU3 902 B 1 
HETATM 4 C C2 BU3 . . . F 4 23.436 5.426 9.566 1 37.35 ? C2 BU3 902 B 1 
HETATM 5 O O5 BU3 . . . F 4 22.899 5.948 10.791 1 42.46 ? O5 BU3 902 B 1 
HETATM 6 C C1 BU3 . . . F 4 23.378 6.466 8.423 1 40.29 ? C1 BU3 902 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           6 
#