data_1XHF
#
_model_server_result.job_id            svu-_rvYYWjcMma5ixgYdw 
_model_server_result.datetime_utc      '2025-03-04 17:04:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xhf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":2003}' 
#
_entry.id    1XHF 
#
_exptl.entry_id    1XHF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              66.007 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BERYLLIUM TRIFLUORIDE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XHF 
_cell.length_a            86.169 
_cell.length_b            86.169 
_cell.length_c            213.082 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XHF 
_symmetry.cell_setting             hexagonal 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 38 A GLU 38 1_555 A N MSE 39 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale2 A C MSE 39 A MSE 39 1_555 A N HIS 40 A HIS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C ILE 52 A ILE 52 1_555 A N MSE 53 A MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 53 A MSE 53 1_555 A N ASP 54 A ASP 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale5 A C LEU 77 A LEU 77 1_555 A N MSE 78 A MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale6 A C MSE 78 A MSE 78 1_555 A N PHE 79 A PHE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale7 A C THR 121 A THR 121 1_555 A N MSE 122 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 B C MSE 1 B MSE 1 1_555 B N GLN 2 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale9 B C GLU 38 B GLU 38 1_555 B N MSE 39 B MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale10 B C MSE 39 B MSE 39 1_555 B N HIS 40 B HIS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale11 B C ILE 52 B ILE 52 1_555 B N MSE 53 B MSE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale12 B C MSE 53 B MSE 53 1_555 B N ASP 54 B ASP 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale13 B C LEU 77 B LEU 77 1_555 B N MSE 78 B MSE 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? 
covale ? covale14 B C MSE 78 B MSE 78 1_555 B N PHE 79 B PHE 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale15 B C THR 121 B THR 121 1_555 B N MSE 122 B MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A OD2 ASP 11 A ASP 11 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc2 A OD2 ASP 54 A ASP 54 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc3 A OD1 ASP 54 A ASP 54 1_555 D BE BEF . A BEF 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.508 ? 
metalc ? metalc4 A O ASN 56 A ASN 56 1_555 C MG MG . A MG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
metalc ? metalc5 C MG MG . A MG 1001 1_555 D F1 BEF . A BEF 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc6 C MG MG . A MG 1001 1_555 J O HOH . A HOH 2016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc7 C MG MG . A MG 1001 1_555 J O HOH . A HOH 2047 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc8 B OD2 ASP 11 B ASP 11 1_555 E MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc9 B OD2 ASP 54 B ASP 54 1_555 E MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc10 B OD1 ASP 54 B ASP 54 1_555 F BE BEF . B BEF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.59 ? 
metalc ? metalc11 B O ASN 56 B ASN 56 1_555 E MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc12 E MG MG . B MG 1002 1_555 F F1 BEF . B BEF 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc13 E MG MG . B MG 1002 1_555 K O HOH . B HOH 4008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
metalc ? metalc14 E MG MG . B MG 1002 1_555 K O HOH . B HOH 4052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
#
_chem_comp.formula           'Be F3 -1' 
_chem_comp.formula_weight    66.007 
_chem_comp.id                BEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BERYLLIUM TRIFLUORIDE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
BE F1 BEF sing 70 n n 
BE F2 BEF sing 71 n n 
BE F3 BEF sing 72 n n 
#
_atom_sites.entry_id                     1XHF 
_atom_sites.fract_transf_matrix[1][1]    0.011605 
_atom_sites.fract_transf_matrix[1][2]    0.0067 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0134 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MG A 1 1001 1001 MG MG . 
D 3 BEF A 1 2001 2001 BEF BEF . 
E 2 MG B 1 1002 1002 MG MG . 
F 3 BEF B 1 2002 2002 BEF BEF . 
G 3 BEF B 1 2003 2003 BEF BEF . 
H 4 BF4 B 1 3001 3001 BF4 BF4 . 
I 5 BF2 B 1 4001 4001 BF2 BF2 . 
J 6 HOH A 1 2002 6 HOH HOH . 
J 6 HOH A 2 2003 7 HOH HOH . 
J 6 HOH A 3 2004 8 HOH HOH . 
J 6 HOH A 4 2005 9 HOH HOH . 
J 6 HOH A 5 2006 11 HOH HOH . 
J 6 HOH A 6 2007 12 HOH HOH . 
J 6 HOH A 7 2008 14 HOH HOH . 
J 6 HOH A 8 2009 15 HOH HOH . 
J 6 HOH A 9 2010 16 HOH HOH . 
J 6 HOH A 10 2011 17 HOH HOH . 
J 6 HOH A 11 2012 19 HOH HOH . 
J 6 HOH A 12 2013 20 HOH HOH . 
J 6 HOH A 13 2014 21 HOH HOH . 
J 6 HOH A 14 2015 23 HOH HOH . 
J 6 HOH A 15 2016 26 HOH HOH . 
J 6 HOH A 16 2017 27 HOH HOH . 
J 6 HOH A 17 2018 33 HOH HOH . 
J 6 HOH A 18 2019 37 HOH HOH . 
J 6 HOH A 19 2020 40 HOH HOH . 
J 6 HOH A 20 2021 41 HOH HOH . 
J 6 HOH A 21 2022 43 HOH HOH . 
J 6 HOH A 22 2023 46 HOH HOH . 
J 6 HOH A 23 2024 48 HOH HOH . 
J 6 HOH A 24 2025 52 HOH HOH . 
J 6 HOH A 25 2026 54 HOH HOH . 
J 6 HOH A 26 2027 56 HOH HOH . 
J 6 HOH A 27 2028 57 HOH HOH . 
J 6 HOH A 28 2029 61 HOH HOH . 
J 6 HOH A 29 2030 63 HOH HOH . 
J 6 HOH A 30 2031 66 HOH HOH . 
J 6 HOH A 31 2032 67 HOH HOH . 
J 6 HOH A 32 2033 69 HOH HOH . 
J 6 HOH A 33 2034 70 HOH HOH . 
J 6 HOH A 34 2035 71 HOH HOH . 
J 6 HOH A 35 2036 72 HOH HOH . 
J 6 HOH A 36 2037 75 HOH HOH . 
J 6 HOH A 37 2038 77 HOH HOH . 
J 6 HOH A 38 2039 85 HOH HOH . 
J 6 HOH A 39 2040 86 HOH HOH . 
J 6 HOH A 40 2041 87 HOH HOH . 
J 6 HOH A 41 2042 88 HOH HOH . 
J 6 HOH A 42 2043 89 HOH HOH . 
J 6 HOH A 43 2044 90 HOH HOH . 
J 6 HOH A 44 2045 91 HOH HOH . 
J 6 HOH A 45 2046 92 HOH HOH . 
J 6 HOH A 46 2047 97 HOH HOH . 
J 6 HOH A 47 2048 99 HOH HOH . 
J 6 HOH A 48 2049 105 HOH HOH . 
J 6 HOH A 49 2050 106 HOH HOH . 
J 6 HOH A 50 2051 113 HOH HOH . 
K 6 HOH B 1 4002 1 HOH HOH . 
K 6 HOH B 2 4003 2 HOH HOH . 
K 6 HOH B 3 4004 3 HOH HOH . 
K 6 HOH B 4 4005 4 HOH HOH . 
K 6 HOH B 5 4006 5 HOH HOH . 
K 6 HOH B 6 4007 10 HOH HOH . 
K 6 HOH B 7 4008 13 HOH HOH . 
K 6 HOH B 8 4009 18 HOH HOH . 
K 6 HOH B 9 4010 22 HOH HOH . 
K 6 HOH B 10 4011 24 HOH HOH . 
K 6 HOH B 11 4012 25 HOH HOH . 
K 6 HOH B 12 4013 28 HOH HOH . 
K 6 HOH B 13 4014 29 HOH HOH . 
K 6 HOH B 14 4015 30 HOH HOH . 
K 6 HOH B 15 4016 31 HOH HOH . 
K 6 HOH B 16 4017 32 HOH HOH . 
K 6 HOH B 17 4018 34 HOH HOH . 
K 6 HOH B 18 4019 35 HOH HOH . 
K 6 HOH B 19 4020 36 HOH HOH . 
K 6 HOH B 20 4021 38 HOH HOH . 
K 6 HOH B 21 4022 39 HOH HOH . 
K 6 HOH B 22 4023 42 HOH HOH . 
K 6 HOH B 23 4024 44 HOH HOH . 
K 6 HOH B 24 4025 45 HOH HOH . 
K 6 HOH B 25 4026 47 HOH HOH . 
K 6 HOH B 26 4027 49 HOH HOH . 
K 6 HOH B 27 4028 50 HOH HOH . 
K 6 HOH B 28 4029 51 HOH HOH . 
K 6 HOH B 29 4030 53 HOH HOH . 
K 6 HOH B 30 4031 55 HOH HOH . 
K 6 HOH B 31 4032 58 HOH HOH . 
K 6 HOH B 32 4033 59 HOH HOH . 
K 6 HOH B 33 4034 60 HOH HOH . 
K 6 HOH B 34 4035 62 HOH HOH . 
K 6 HOH B 35 4036 64 HOH HOH . 
K 6 HOH B 36 4037 65 HOH HOH . 
K 6 HOH B 37 4038 68 HOH HOH . 
K 6 HOH B 38 4039 73 HOH HOH . 
K 6 HOH B 39 4040 74 HOH HOH . 
K 6 HOH B 40 4041 76 HOH HOH . 
K 6 HOH B 41 4042 78 HOH HOH . 
K 6 HOH B 42 4043 79 HOH HOH . 
K 6 HOH B 43 4044 80 HOH HOH . 
K 6 HOH B 44 4045 81 HOH HOH . 
K 6 HOH B 45 4046 82 HOH HOH . 
K 6 HOH B 46 4047 83 HOH HOH . 
K 6 HOH B 47 4048 84 HOH HOH . 
K 6 HOH B 48 4049 93 HOH HOH . 
K 6 HOH B 49 4050 94 HOH HOH . 
K 6 HOH B 50 4051 95 HOH HOH . 
K 6 HOH B 51 4052 96 HOH HOH . 
K 6 HOH B 52 4053 98 HOH HOH . 
K 6 HOH B 53 4054 100 HOH HOH . 
K 6 HOH B 54 4055 101 HOH HOH . 
K 6 HOH B 55 4056 102 HOH HOH . 
K 6 HOH B 56 4057 103 HOH HOH . 
K 6 HOH B 57 4058 104 HOH HOH . 
K 6 HOH B 58 4059 107 HOH HOH . 
K 6 HOH B 59 4060 108 HOH HOH . 
K 6 HOH B 60 4061 109 HOH HOH . 
K 6 HOH B 61 4062 110 HOH HOH . 
K 6 HOH B 62 4063 111 HOH HOH . 
K 6 HOH B 63 4064 112 HOH HOH . 
K 6 HOH B 64 4065 114 HOH HOH . 
K 6 HOH B 65 4066 115 HOH HOH . 
K 6 HOH B 66 4067 116 HOH HOH . 
K 6 HOH B 67 4068 117 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 BE BE BEF . . . G 3 -23.419 8.95 -5.278 1 51.56 ? BE BEF 2003 B 1 
HETATM 2 F F1 BEF . . . G 3 -24.843 9.458 -5.341 1 52.31 ? F1 BEF 2003 B 1 
HETATM 3 F F2 BEF . . . G 3 -22.475 10.093 -5.484 1 51.81 ? F2 BEF 2003 B 1 
HETATM 4 F F3 BEF . . . G 3 -23.186 7.921 -6.352 1 51.57 ? F3 BEF 2003 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#