data_1XIO
#
_model_server_result.job_id            9Owyt91l0LjQTs28GqvPGw 
_model_server_result.datetime_utc      '2025-07-09 18:17:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xio 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":304}' 
#
_entry.id    1XIO 
#
_exptl.entry_id    1XIO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              744.034 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1XIO 
_cell.length_a            103.095 
_cell.length_b            116.513 
_cell.length_c            56.186 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XIO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 103.095 0 28.093 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 210 A LYS 210 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.66 ? 
covale ? covale2 A NZ LYS 210 A LYS 210 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.58 ? 
#
_chem_comp.formula           'C41 H78 N O8 P' 
_chem_comp.formula_weight    744.034 
_chem_comp.id                PEE 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,2-dioleoyl-sn-glycero-3-phosphoethanolamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     DOPE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C5 PEE sing 237 n n 
C5 C4 PEE sing 238 n n 
C4 O4P PEE sing 239 n n 
O4P P PEE sing 240 n n 
O1P P PEE doub 241 n n 
C1 O3P PEE sing 242 n n 
C1 C2 PEE sing 243 n n 
O3P P PEE sing 244 n n 
P O2P PEE sing 245 n n 
C2 C3 PEE sing 246 n n 
C2 O2 PEE sing 247 n n 
C3 O3 PEE sing 248 n n 
O2 C10 PEE sing 249 n n 
C31 C30 PEE sing 250 n n 
C31 C32 PEE sing 251 n n 
C33 C32 PEE sing 252 n n 
C33 C34 PEE sing 253 n n 
C30 O3 PEE sing 254 n n 
C30 O5 PEE doub 255 n n 
C10 O4 PEE doub 256 n n 
C10 C11 PEE sing 257 n n 
C34 C35 PEE sing 258 n n 
C11 C12 PEE sing 259 n n 
C35 C36 PEE sing 260 n n 
C36 C37 PEE sing 261 n n 
C37 C38 PEE sing 262 n n 
C38 C39 PEE doub 263 z n 
C12 C13 PEE sing 264 n n 
C39 C40 PEE sing 265 n n 
C13 C14 PEE sing 266 n n 
C14 C15 PEE sing 267 n n 
C40 C41 PEE sing 268 n n 
C15 C16 PEE sing 269 n n 
C41 C42 PEE sing 270 n n 
C16 C17 PEE sing 271 n n 
C42 C43 PEE sing 272 n n 
C17 C18 PEE sing 273 n n 
C43 C44 PEE sing 274 n n 
C18 C19 PEE doub 275 z n 
C46 C47 PEE sing 276 n n 
C46 C45 PEE sing 277 n n 
C44 C45 PEE sing 278 n n 
C19 C20 PEE sing 279 n n 
C20 C21 PEE sing 280 n n 
C21 C22 PEE sing 281 n n 
C22 C23 PEE sing 282 n n 
C23 C24 PEE sing 283 n n 
C24 C25 PEE sing 284 n n 
C26 C25 PEE sing 285 n n 
C26 C27 PEE sing 286 n n 
C27 H7 PEE sing 287 n n 
C27 H8 PEE sing 288 n n 
C27 H82 PEE sing 289 n n 
C26 H5 PEE sing 290 n n 
C26 H6 PEE sing 291 n n 
C25 H12 PEE sing 292 n n 
C25 H4 PEE sing 293 n n 
C24 H10 PEE sing 294 n n 
C24 H11 PEE sing 295 n n 
C23 H83 PEE sing 296 n n 
C23 H9 PEE sing 297 n n 
C22 H2 PEE sing 298 n n 
C22 H3 PEE sing 299 n n 
C21 H14 PEE sing 300 n n 
C21 H1 PEE sing 301 n n 
C20 H16 PEE sing 302 n n 
C20 H13 PEE sing 303 n n 
C19 H18 PEE sing 304 n n 
C18 H20 PEE sing 305 n n 
C17 H22 PEE sing 306 n n 
C17 H19 PEE sing 307 n n 
C16 H21 PEE sing 308 n n 
C16 H28 PEE sing 309 n n 
C15 H23 PEE sing 310 n n 
C15 H24 PEE sing 311 n n 
C14 H25 PEE sing 312 n n 
C14 H26 PEE sing 313 n n 
C13 H17 PEE sing 314 n n 
C13 H27 PEE sing 315 n n 
C12 H15 PEE sing 316 n n 
C12 H29 PEE sing 317 n n 
C11 H30 PEE sing 318 n n 
C11 H31 PEE sing 319 n n 
C2 H32 PEE sing 320 n n 
C1 H33 PEE sing 321 n n 
C1 H34 PEE sing 322 n n 
O2P H35 PEE sing 323 n n 
C4 H36 PEE sing 324 n n 
C4 H37 PEE sing 325 n n 
C5 H38 PEE sing 326 n n 
C5 H39 PEE sing 327 n n 
N H40 PEE sing 328 n n 
N H41 PEE sing 329 n n 
C3 H43 PEE sing 330 n n 
C3 H44 PEE sing 331 n n 
C31 H45 PEE sing 332 n n 
C31 H46 PEE sing 333 n n 
C32 H47 PEE sing 334 n n 
C32 H48 PEE sing 335 n n 
C33 H49 PEE sing 336 n n 
C33 H50 PEE sing 337 n n 
C34 H51 PEE sing 338 n n 
C34 H52 PEE sing 339 n n 
C35 H53 PEE sing 340 n n 
C35 H54 PEE sing 341 n n 
C36 H55 PEE sing 342 n n 
C36 H56 PEE sing 343 n n 
C37 H57 PEE sing 344 n n 
C37 H58 PEE sing 345 n n 
C38 H59 PEE sing 346 n n 
C39 H60 PEE sing 347 n n 
C40 H81 PEE sing 348 n n 
C40 H61 PEE sing 349 n n 
C41 H80 PEE sing 350 n n 
C41 H62 PEE sing 351 n n 
C42 H63 PEE sing 352 n n 
C42 H64 PEE sing 353 n n 
C43 H65 PEE sing 354 n n 
C43 H66 PEE sing 355 n n 
C44 H67 PEE sing 356 n n 
C44 H68 PEE sing 357 n n 
C45 H69 PEE sing 358 n n 
C45 H70 PEE sing 359 n n 
C46 H71 PEE sing 360 n n 
C46 H72 PEE sing 361 n n 
C47 H73 PEE sing 362 n n 
C47 H74 PEE sing 363 n n 
C47 H75 PEE sing 364 n n 
#
_atom_sites.entry_id                     1XIO 
_atom_sites.fract_transf_matrix[1][1]    0.0097 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008583 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017798 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 RET A 1 301 301 RET RET . 
C 3 PEE A 1 302 302 PEE PEE . 
D 3 PEE A 1 303 303 PEE PEE . 
E 3 PEE A 1 304 304 PEE PEE . 
F 3 PEE A 1 305 305 PEE PEE . 
G 3 PEE A 1 306 306 PEE PEE . 
H 3 PEE A 1 307 307 PEE PEE . 
I 3 PEE A 1 308 308 PEE PEE . 
J 3 PEE A 1 309 309 PEE PEE . 
K 3 PEE A 1 310 310 PEE PEE . 
L 3 PEE A 1 311 311 PEE PEE . 
M 3 PEE A 1 312 312 PEE PEE . 
N 3 PEE A 1 313 313 PEE PEE . 
O 3 PEE A 1 315 315 PEE PEE . 
P 4 HOH A 1 402 402 HOH HOH . 
P 4 HOH A 2 403 403 HOH HOH . 
P 4 HOH A 3 404 404 HOH HOH . 
P 4 HOH A 4 405 405 HOH HOH . 
P 4 HOH A 5 406 406 HOH HOH . 
P 4 HOH A 6 407 407 HOH HOH . 
P 4 HOH A 7 408 408 HOH HOH . 
P 4 HOH A 8 501 501 HOH HOH . 
P 4 HOH A 9 502 502 HOH HOH . 
P 4 HOH A 10 503 503 HOH HOH . 
P 4 HOH A 11 504 504 HOH HOH . 
P 4 HOH A 12 505 505 HOH HOH . 
P 4 HOH A 13 601 601 HOH HOH . 
P 4 HOH A 14 602 602 HOH HOH . 
P 4 HOH A 15 603 603 HOH HOH . 
P 4 HOH A 16 604 604 HOH HOH . 
P 4 HOH A 17 605 605 HOH HOH . 
P 4 HOH A 18 606 606 HOH HOH . 
P 4 HOH A 19 607 607 HOH HOH . 
P 4 HOH A 20 608 608 HOH HOH . 
P 4 HOH A 21 609 609 HOH HOH . 
P 4 HOH A 22 610 610 HOH HOH . 
P 4 HOH A 23 611 611 HOH HOH . 
P 4 HOH A 24 612 612 HOH HOH . 
P 4 HOH A 25 613 613 HOH HOH . 
P 4 HOH A 26 614 614 HOH HOH . 
P 4 HOH A 27 615 615 HOH HOH . 
P 4 HOH A 28 616 616 HOH HOH . 
P 4 HOH A 29 617 617 HOH HOH . 
P 4 HOH A 30 618 618 HOH HOH . 
P 4 HOH A 31 619 619 HOH HOH . 
P 4 HOH A 32 620 620 HOH HOH . 
P 4 HOH A 33 621 621 HOH HOH . 
P 4 HOH A 34 622 622 HOH HOH . 
P 4 HOH A 35 623 623 HOH HOH . 
P 4 HOH A 36 624 624 HOH HOH . 
P 4 HOH A 37 625 625 HOH HOH . 
P 4 HOH A 38 626 626 HOH HOH . 
P 4 HOH A 39 627 627 HOH HOH . 
P 4 HOH A 40 628 628 HOH HOH . 
P 4 HOH A 41 629 629 HOH HOH . 
P 4 HOH A 42 630 630 HOH HOH . 
P 4 HOH A 43 631 631 HOH HOH . 
P 4 HOH A 44 632 632 HOH HOH . 
P 4 HOH A 45 633 633 HOH HOH . 
P 4 HOH A 46 634 634 HOH HOH . 
P 4 HOH A 47 635 635 HOH HOH . 
P 4 HOH A 48 636 636 HOH HOH . 
P 4 HOH A 49 637 637 HOH HOH . 
P 4 HOH A 50 638 638 HOH HOH . 
P 4 HOH A 51 639 639 HOH HOH . 
P 4 HOH A 52 640 640 HOH HOH . 
P 4 HOH A 53 641 641 HOH HOH . 
P 4 HOH A 54 642 642 HOH HOH . 
P 4 HOH A 55 643 643 HOH HOH . 
P 4 HOH A 56 644 644 HOH HOH . 
P 4 HOH A 57 645 645 HOH HOH . 
P 4 HOH A 58 646 646 HOH HOH . 
P 4 HOH A 59 647 647 HOH HOH . 
P 4 HOH A 60 648 648 HOH HOH . 
P 4 HOH A 61 649 649 HOH HOH . 
P 4 HOH A 62 650 650 HOH HOH . 
P 4 HOH A 63 651 651 HOH HOH . 
P 4 HOH A 64 652 652 HOH HOH . 
P 4 HOH A 65 653 653 HOH HOH . 
P 4 HOH A 66 654 654 HOH HOH . 
P 4 HOH A 67 655 655 HOH HOH . 
P 4 HOH A 68 656 656 HOH HOH . 
P 4 HOH A 69 657 657 HOH HOH . 
P 4 HOH A 70 658 658 HOH HOH . 
P 4 HOH A 71 659 659 HOH HOH . 
P 4 HOH A 72 660 660 HOH HOH . 
P 4 HOH A 73 661 661 HOH HOH . 
P 4 HOH A 74 662 662 HOH HOH . 
P 4 HOH A 75 663 663 HOH HOH . 
P 4 HOH A 76 664 664 HOH HOH . 
P 4 HOH A 77 665 665 HOH HOH . 
P 4 HOH A 78 666 666 HOH HOH . 
P 4 HOH A 79 667 667 HOH HOH . 
P 4 HOH A 80 668 668 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 PEE . . . E 3 20.877 46.514 26.965 1 38.42 ? C27 PEE 304 A 1 
HETATM 2 C C26 PEE . . . E 3 20.991 45.099 27.272 1 37.71 ? C26 PEE 304 A 1 
HETATM 3 C C25 PEE . . . E 3 19.866 44.356 26.626 1 37.03 ? C25 PEE 304 A 1 
HETATM 4 C C24 PEE . . . E 3 20 42.87 26.955 1 36.79 ? C24 PEE 304 A 1 
HETATM 5 C C23 PEE . . . E 3 18.702 42.165 26.627 1 34.41 ? C23 PEE 304 A 1 
HETATM 6 C C22 PEE . . . E 3 19.002 40.77 26.082 1 36.18 ? C22 PEE 304 A 1 
HETATM 7 C C21 PEE . . . E 3 18.085 39.769 26.714 1 35.79 ? C21 PEE 304 A 1 
HETATM 8 C C20 PEE . . . E 3 18.378 38.385 26.171 1 34.22 ? C20 PEE 304 A 1 
HETATM 9 C C19 PEE . . . E 3 18.682 37.457 27.314 1 34.35 ? C19 PEE 304 A 1 
HETATM 10 C C18 PEE . . . E 3 19.012 36.089 26.765 1 35.1 ? C18 PEE 304 A 1 
HETATM 11 C C17 PEE . . . E 3 18.631 35.031 27.784 1 34.22 ? C17 PEE 304 A 1 
HETATM 12 C C16 PEE . . . E 3 18.827 33.665 27.16 1 34.89 ? C16 PEE 304 A 1 
HETATM 13 C C15 PEE . . . E 3 18.969 32.625 28.268 1 35.64 ? C15 PEE 304 A 1 
HETATM 14 C C14 PEE . . . E 3 20.007 31.591 27.848 1 34.38 ? C14 PEE 304 A 1 
HETATM 15 C C13 PEE . . . E 3 19.368 30.219 27.994 1 37.34 ? C13 PEE 304 A 1 
#
_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           310 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           15 
#