data_1XIU # _model_server_result.job_id qdZY9XIA6ynL1pumRkxglQ _model_server_result.datetime_utc '2025-03-06 08:34:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1XIU # _exptl.entry_id 1XIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XIU _cell.length_a 87.1 _cell.length_b 87.1 _cell.length_c 320.4 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_655 -x+y+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 87.1 0 160.2 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 1XIU _atom_sites.fract_transf_matrix[1][1] 0.011481 _atom_sites.fract_transf_matrix[1][2] 0.006629 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003121 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 9CR A 1 201 201 9CR REA . F 3 9CR B 1 202 202 9CR REA . G 4 HOH A 1 1 1 HOH HOH . G 4 HOH A 2 4 4 HOH HOH . G 4 HOH A 3 5 5 HOH HOH . G 4 HOH A 4 6 6 HOH HOH . G 4 HOH A 5 7 7 HOH HOH . G 4 HOH A 6 9 9 HOH HOH . G 4 HOH A 7 12 12 HOH HOH . G 4 HOH A 8 13 13 HOH HOH . G 4 HOH A 9 15 15 HOH HOH . G 4 HOH A 10 18 18 HOH HOH . G 4 HOH A 11 19 19 HOH HOH . G 4 HOH A 12 20 20 HOH HOH . G 4 HOH A 13 21 21 HOH HOH . G 4 HOH A 14 22 22 HOH HOH . G 4 HOH A 15 23 23 HOH HOH . G 4 HOH A 16 24 24 HOH HOH . G 4 HOH A 17 26 26 HOH HOH . G 4 HOH A 18 28 28 HOH HOH . G 4 HOH A 19 30 30 HOH HOH . G 4 HOH A 20 33 33 HOH HOH . G 4 HOH A 21 34 34 HOH HOH . G 4 HOH A 22 36 36 HOH HOH . G 4 HOH A 23 38 38 HOH HOH . G 4 HOH A 24 39 39 HOH HOH . G 4 HOH A 25 40 40 HOH HOH . G 4 HOH A 26 43 43 HOH HOH . G 4 HOH A 27 44 44 HOH HOH . G 4 HOH A 28 46 46 HOH HOH . H 4 HOH B 1 2 2 HOH HOH . H 4 HOH B 2 3 3 HOH HOH . H 4 HOH B 3 8 8 HOH HOH . H 4 HOH B 4 10 10 HOH HOH . H 4 HOH B 5 11 11 HOH HOH . H 4 HOH B 6 14 14 HOH HOH . H 4 HOH B 7 16 16 HOH HOH . H 4 HOH B 8 17 17 HOH HOH . H 4 HOH B 9 25 25 HOH HOH . H 4 HOH B 10 27 27 HOH HOH . H 4 HOH B 11 29 29 HOH HOH . H 4 HOH B 12 32 32 HOH HOH . H 4 HOH B 13 35 35 HOH HOH . H 4 HOH B 14 37 37 HOH HOH . H 4 HOH B 15 41 41 HOH HOH . H 4 HOH B 16 42 42 HOH HOH . H 4 HOH B 17 45 45 HOH HOH . I 4 HOH E 1 47 47 HOH HOH . J 4 HOH F 1 31 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . E 3 36.593 39.4 87.47 1 43.27 ? C1 9CR 201 A 1 HETATM 2 C C2 9CR . . . E 3 38.01 39.907 87.752 1 42.55 ? C2 9CR 201 A 1 HETATM 3 C C3 9CR . . . E 3 38.142 41.347 88.284 1 42.78 ? C3 9CR 201 A 1 HETATM 4 C C4 9CR . . . E 3 37.175 41.752 89.393 1 42.13 ? C4 9CR 201 A 1 HETATM 5 C C5 9CR . . . E 3 35.788 41.193 89.179 1 42.88 ? C5 9CR 201 A 1 HETATM 6 C C6 9CR . . . E 3 35.546 40.032 88.374 1 42.34 ? C6 9CR 201 A 1 HETATM 7 C C7 9CR . . . E 3 34.29 39.264 88.328 1 39.75 ? C7 9CR 201 A 1 HETATM 8 C C8 9CR . . . E 3 33.516 39 89.532 1 43.48 ? C8 9CR 201 A 1 HETATM 9 C C9 9CR . . . E 3 32.166 38.467 89.359 1 47.35 ? C9 9CR 201 A 1 HETATM 10 C C10 9CR . . . E 3 31.614 37.644 90.373 1 45.38 ? C10 9CR 201 A 1 HETATM 11 C C11 9CR . . . E 3 32.28 37.664 91.655 1 48.98 ? C11 9CR 201 A 1 HETATM 12 C C12 9CR . . . E 3 31.443 37.28 92.795 1 48.13 ? C12 9CR 201 A 1 HETATM 13 C C13 9CR . . . E 3 32.036 36.875 94.032 1 44.71 ? C13 9CR 201 A 1 HETATM 14 C C14 9CR . . . E 3 31.096 36.314 94.9 1 46.41 ? C14 9CR 201 A 1 HETATM 15 C C15 9CR . . . E 3 31.056 36.501 96.368 1 47.03 ? C15 9CR 201 A 1 HETATM 16 C C16 9CR . . . E 3 36.519 37.882 87.657 1 41.54 ? C16 9CR 201 A 1 HETATM 17 C C17 9CR . . . E 3 36.136 39.727 86.058 1 42.03 ? C17 9CR 201 A 1 HETATM 18 C C18 9CR . . . E 3 34.707 41.935 89.933 1 44.95 ? C18 9CR 201 A 1 HETATM 19 C C19 9CR . . . E 3 31.296 38.708 88.157 1 51.24 ? C19 9CR 201 A 1 HETATM 20 C C20 9CR . . . E 3 33.518 37.061 94.301 1 48.14 ? C20 9CR 201 A 1 HETATM 21 O O1 9CR . . . E 3 29.978 36.906 96.963 1 43.67 ? O1 9CR 201 A 1 HETATM 22 O O2 9CR . . . E 3 32.149 36.224 96.95 1 45.85 ? O2 9CR 201 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 420 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #