data_1XJ2 # _model_server_result.job_id 0q5gVPvZUXqG0FdsI1sefw _model_server_result.datetime_utc '2025-02-20 05:35:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xj2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":719}' # _entry.id 1XJ2 # _exptl.entry_id 1XJ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XJ2 _cell.length_a 128.458 _cell.length_b 128.458 _cell.length_c 58.536 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJ2 _symmetry.cell_setting rhombohedral _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 47 A HIS 200 1_555 B FE HEM . A HEM 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 B FE HEM . A HEM 719 1_555 C C CMO . A CMO 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? metalc ? metalc3 B FE HEM . A HEM 719 1_555 C O CMO . A CMO 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 117 n n CHA C4D HEM doub 118 n n CHA HHA HEM sing 119 n n CHB C4A HEM sing 120 n n CHB C1B HEM doub 121 n n CHB HHB HEM sing 122 n n CHC C4B HEM sing 123 n n CHC C1C HEM doub 124 n n CHC HHC HEM sing 125 n n CHD C4C HEM doub 126 n n CHD C1D HEM sing 127 n n CHD HHD HEM sing 128 n n C1A C2A HEM doub 129 n y C1A NA HEM sing 130 n y C2A C3A HEM sing 131 n y C2A CAA HEM sing 132 n n C3A C4A HEM doub 133 n y C3A CMA HEM sing 134 n n C4A NA HEM sing 135 n y CMA HMA HEM sing 136 n n CMA HMAA HEM sing 137 n n CMA HMAB HEM sing 138 n n CAA CBA HEM sing 139 n n CAA HAA HEM sing 140 n n CAA HAAA HEM sing 141 n n CBA CGA HEM sing 142 n n CBA HBA HEM sing 143 n n CBA HBAA HEM sing 144 n n CGA O1A HEM doub 145 n n CGA O2A HEM sing 146 n n C1B C2B HEM sing 147 n n C1B NB HEM sing 148 n n C2B C3B HEM doub 149 n n C2B CMB HEM sing 150 n n C3B C4B HEM sing 151 n n C3B CAB HEM sing 152 n n C4B NB HEM doub 153 n n CMB HMB HEM sing 154 n n CMB HMBA HEM sing 155 n n CMB HMBB HEM sing 156 n n CAB CBB HEM doub 157 n n CAB HAB HEM sing 158 n n CBB HBB HEM sing 159 n n CBB HBBA HEM sing 160 n n C1C C2C HEM sing 161 n y C1C NC HEM sing 162 n y C2C C3C HEM doub 163 n y C2C CMC HEM sing 164 n n C3C C4C HEM sing 165 n y C3C CAC HEM sing 166 n n C4C NC HEM sing 167 n y CMC HMC HEM sing 168 n n CMC HMCA HEM sing 169 n n CMC HMCB HEM sing 170 n n CAC CBC HEM doub 171 n n CAC HAC HEM sing 172 n n CBC HBC HEM sing 173 n n CBC HBCA HEM sing 174 n n C1D C2D HEM sing 175 n n C1D ND HEM doub 176 n n C2D C3D HEM doub 177 n n C2D CMD HEM sing 178 n n C3D C4D HEM sing 179 n n C3D CAD HEM sing 180 n n C4D ND HEM sing 181 n n CMD HMD HEM sing 182 n n CMD HMDA HEM sing 183 n n CMD HMDB HEM sing 184 n n CAD CBD HEM sing 185 n n CAD HAD HEM sing 186 n n CAD HADA HEM sing 187 n n CBD CGD HEM sing 188 n n CBD HBD HEM sing 189 n n CBD HBDA HEM sing 190 n n CGD O1D HEM doub 191 n n CGD O2D HEM sing 192 n n O2A H2A HEM sing 193 n n O2D H2D HEM sing 194 n n FE NA HEM sing 195 n n FE NB HEM sing 196 n n FE NC HEM sing 197 n n FE ND HEM sing 198 n n # _atom_sites.entry_id 1XJ2 _atom_sites.fract_transf_matrix[1][1] 0.007785 _atom_sites.fract_transf_matrix[1][2] 0.004494 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008989 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 719 719 HEM HEM . C 3 CMO A 1 720 720 CMO CMO . D 4 HOH A 1 1 1 HOH HOH . D 4 HOH A 2 2 2 HOH HOH . D 4 HOH A 3 3 3 HOH HOH . D 4 HOH A 4 4 4 HOH HOH . D 4 HOH A 5 5 5 HOH HOH . D 4 HOH A 6 6 6 HOH HOH . D 4 HOH A 7 7 7 HOH HOH . D 4 HOH A 8 8 8 HOH HOH . D 4 HOH A 9 9 9 HOH HOH . D 4 HOH A 10 10 10 HOH HOH . D 4 HOH A 11 11 11 HOH HOH . D 4 HOH A 12 12 12 HOH HOH . D 4 HOH A 13 13 13 HOH HOH . D 4 HOH A 14 14 14 HOH HOH . D 4 HOH A 15 15 15 HOH HOH . D 4 HOH A 16 16 16 HOH HOH . D 4 HOH A 17 17 17 HOH HOH . D 4 HOH A 18 18 18 HOH HOH . D 4 HOH A 19 19 19 HOH HOH . D 4 HOH A 20 20 20 HOH HOH . D 4 HOH A 21 21 21 HOH HOH . D 4 HOH A 22 22 22 HOH HOH . D 4 HOH A 23 23 23 HOH HOH . D 4 HOH A 24 24 24 HOH HOH . D 4 HOH A 25 25 25 HOH HOH . D 4 HOH A 26 26 26 HOH HOH . D 4 HOH A 27 27 27 HOH HOH . D 4 HOH A 28 28 28 HOH HOH . D 4 HOH A 29 29 29 HOH HOH . D 4 HOH A 30 30 30 HOH HOH . D 4 HOH A 31 31 31 HOH HOH . D 4 HOH A 32 32 32 HOH HOH . D 4 HOH A 33 33 33 HOH HOH . D 4 HOH A 34 34 34 HOH HOH . D 4 HOH A 35 35 35 HOH HOH . D 4 HOH A 36 36 36 HOH HOH . D 4 HOH A 37 37 37 HOH HOH . D 4 HOH A 38 38 38 HOH HOH . D 4 HOH A 39 39 39 HOH HOH . D 4 HOH A 40 40 40 HOH HOH . D 4 HOH A 41 41 41 HOH HOH . D 4 HOH A 42 42 42 HOH HOH . D 4 HOH A 43 43 43 HOH HOH . D 4 HOH A 44 44 44 HOH HOH . D 4 HOH A 45 45 45 HOH HOH . D 4 HOH A 46 46 46 HOH HOH . D 4 HOH A 47 47 47 HOH HOH . D 4 HOH A 48 48 48 HOH HOH . D 4 HOH A 49 49 49 HOH HOH . D 4 HOH A 50 50 50 HOH HOH . D 4 HOH A 51 51 51 HOH HOH . D 4 HOH A 52 52 52 HOH HOH . D 4 HOH A 53 53 53 HOH HOH . D 4 HOH A 54 54 54 HOH HOH . D 4 HOH A 55 55 55 HOH HOH . D 4 HOH A 56 56 56 HOH HOH . D 4 HOH A 57 57 57 HOH HOH . D 4 HOH A 58 58 58 HOH HOH . D 4 HOH A 59 59 59 HOH HOH . D 4 HOH A 60 60 60 HOH HOH . D 4 HOH A 61 61 61 HOH HOH . D 4 HOH A 62 62 62 HOH HOH . D 4 HOH A 63 63 63 HOH HOH . D 4 HOH A 64 64 64 HOH HOH . D 4 HOH A 65 65 65 HOH HOH . D 4 HOH A 66 66 66 HOH HOH . D 4 HOH A 67 67 67 HOH HOH . D 4 HOH A 68 68 68 HOH HOH . D 4 HOH A 69 69 69 HOH HOH . D 4 HOH A 70 70 70 HOH HOH . D 4 HOH A 71 71 71 HOH HOH . D 4 HOH A 72 72 72 HOH HOH . D 4 HOH A 73 73 73 HOH HOH . D 4 HOH A 74 74 74 HOH HOH . D 4 HOH A 75 75 75 HOH HOH . D 4 HOH A 76 76 76 HOH HOH . D 4 HOH A 77 77 77 HOH HOH . D 4 HOH A 78 78 78 HOH HOH . D 4 HOH A 79 79 79 HOH HOH . D 4 HOH A 80 80 80 HOH HOH . D 4 HOH A 81 81 81 HOH HOH . D 4 HOH A 82 82 82 HOH HOH . D 4 HOH A 83 83 83 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -6.253 48.934 52.268 1 52.02 ? CHA HEM 719 A 1 HETATM 2 C CHB HEM . . . B 2 -8.327 52.926 50.516 1 44.88 ? CHB HEM 719 A 1 HETATM 3 C CHC HEM . . . B 2 -11.196 53.163 54.392 1 45.83 ? CHC HEM 719 A 1 HETATM 4 C CHD HEM . . . B 2 -9.375 48.982 55.971 1 48.23 ? CHD HEM 719 A 1 HETATM 5 C C1A HEM . . . B 2 -6.539 50.03 51.467 1 54.03 ? C1A HEM 719 A 1 HETATM 6 C C2A HEM . . . B 2 -5.833 50.388 50.26 1 54.71 ? C2A HEM 719 A 1 HETATM 7 C C3A HEM . . . B 2 -6.362 51.545 49.823 1 53.73 ? C3A HEM 719 A 1 HETATM 8 C C4A HEM . . . B 2 -7.489 51.84 50.669 1 49.08 ? C4A HEM 719 A 1 HETATM 9 C CMA HEM . . . B 2 -5.867 52.371 48.642 1 60.65 ? CMA HEM 719 A 1 HETATM 10 C CAA HEM . . . B 2 -4.72 49.653 49.518 1 61.95 ? CAA HEM 719 A 1 HETATM 11 C CBA HEM . . . B 2 -3.362 50.247 49.837 1 74.8 ? CBA HEM 719 A 1 HETATM 12 C CGA HEM . . . B 2 -2.274 49.761 48.9 1 76.37 ? CGA HEM 719 A 1 HETATM 13 O O1A HEM . . . B 2 -1.131 50.246 49.021 1 78.02 ? O1A HEM 719 A 1 HETATM 14 O O2A HEM . . . B 2 -2.558 48.898 48.044 1 81.98 ? O2A HEM 719 A 1 HETATM 15 C C1B HEM . . . B 2 -9.333 53.293 51.391 1 41.53 ? C1B HEM 719 A 1 HETATM 16 C C2B HEM . . . B 2 -10.242 54.384 51.169 1 39.91 ? C2B HEM 719 A 1 HETATM 17 C C3B HEM . . . B 2 -10.983 54.515 52.282 1 38.82 ? C3B HEM 719 A 1 HETATM 18 C C4B HEM . . . B 2 -10.624 53.419 53.157 1 40.68 ? C4B HEM 719 A 1 HETATM 19 C CMB HEM . . . B 2 -10.385 55.227 49.911 1 44.97 ? CMB HEM 719 A 1 HETATM 20 C CAB HEM . . . B 2 -11.852 55.596 52.387 1 35.87 ? CAB HEM 719 A 1 HETATM 21 C CBB HEM . . . B 2 -13.098 55.68 53.045 1 41.95 ? CBB HEM 719 A 1 HETATM 22 C C1C HEM . . . B 2 -10.899 52.08 55.199 1 39.54 ? C1C HEM 719 A 1 HETATM 23 C C2C HEM . . . B 2 -11.453 51.85 56.512 1 38.31 ? C2C HEM 719 A 1 HETATM 24 C C3C HEM . . . B 2 -10.958 50.666 56.947 1 46.43 ? C3C HEM 719 A 1 HETATM 25 C C4C HEM . . . B 2 -10.12 50.152 55.893 1 36.31 ? C4C HEM 719 A 1 HETATM 26 C CMC HEM . . . B 2 -12.417 52.807 57.196 1 42.09 ? CMC HEM 719 A 1 HETATM 27 C CAC HEM . . . B 2 -11.065 50.003 58.192 1 43.66 ? CAC HEM 719 A 1 HETATM 28 C CBC HEM . . . B 2 -11.795 50.39 59.367 1 43.27 ? CBC HEM 719 A 1 HETATM 29 C C1D HEM . . . B 2 -8.399 48.579 55.07 1 52.48 ? C1D HEM 719 A 1 HETATM 30 C C2D HEM . . . B 2 -7.565 47.416 55.238 1 54.8 ? C2D HEM 719 A 1 HETATM 31 C C3D HEM . . . B 2 -6.652 47.429 54.24 1 60.33 ? C3D HEM 719 A 1 HETATM 32 C C4D HEM . . . B 2 -6.942 48.584 53.418 1 54.89 ? C4D HEM 719 A 1 HETATM 33 C CMD HEM . . . B 2 -7.648 46.422 56.379 1 57.74 ? CMD HEM 719 A 1 HETATM 34 C CAD HEM . . . B 2 -5.51 46.412 54.093 1 66.81 ? CAD HEM 719 A 1 HETATM 35 C CBD HEM . . . B 2 -4.396 46.654 55.111 1 77.25 ? CBD HEM 719 A 1 HETATM 36 C CGD HEM . . . B 2 -3.145 47.266 54.495 1 80.48 ? CGD HEM 719 A 1 HETATM 37 O O1D HEM . . . B 2 -2.324 47.835 55.247 1 80.55 ? O1D HEM 719 A 1 HETATM 38 O O2D HEM . . . B 2 -2.975 47.168 53.263 1 81.97 ? O2D HEM 719 A 1 HETATM 39 N NA HEM . . . B 2 -7.551 50.937 51.71 1 44.73 ? NA HEM 719 A 1 HETATM 40 N NB HEM . . . B 2 -9.645 52.646 52.572 1 38.96 ? NB HEM 719 A 1 HETATM 41 N NC HEM . . . B 2 -10.012 51.079 54.874 1 47.79 ? NC HEM 719 A 1 HETATM 42 N ND HEM . . . B 2 -8.017 49.283 53.938 1 46.49 ? ND HEM 719 A 1 HETATM 43 FE FE HEM . . . B 2 -8.787 50.99 53.269 1 48.62 ? FE HEM 719 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 67 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #