data_1XJA # _model_server_result.job_id bDZLwLGTXLxH7yBveGvyzg _model_server_result.datetime_utc '2024-10-11 16:28:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":307}' # _entry.id 1XJA # _exptl.entry_id 1XJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 25 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.45 _cell.angle_gamma 90 _cell.entry_id 1XJA _cell.length_a 260.632 _cell.length_b 40.621 _cell.length_c 102.589 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,F,G,H,I,J,K,L,M,EA,FA 1 1 C,D,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,GA,HA 2 1 E,AA,BA,CA,DA,IA 3 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -27.329438 0 98.881772 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N ? 2 Y N N ? 2 Z N N ? 2 AA N N ? 2 BA N N ? 2 CA N N ? 2 DA N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1XJA _atom_sites.fract_transf_matrix[1][1] 0.003837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00106 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 EDO A 1 304 304 EDO EDO . G 2 EDO A 1 318 318 EDO EDO . H 2 EDO A 1 323 323 EDO EDO . I 2 EDO B 1 303 303 EDO EDO . J 2 EDO B 1 306 306 EDO EDO . K 2 EDO B 1 316 316 EDO EDO . L 2 EDO B 1 317 317 EDO EDO . M 2 EDO B 1 320 320 EDO EDO . N 2 EDO C 1 310 310 EDO EDO . O 2 EDO C 1 321 321 EDO EDO . P 2 EDO D 1 301 301 EDO EDO . Q 2 EDO D 1 302 302 EDO EDO . R 2 EDO D 1 305 305 EDO EDO . S 2 EDO D 1 307 307 EDO EDO . T 2 EDO D 1 309 309 EDO EDO . U 2 EDO D 1 311 311 EDO EDO . V 2 EDO D 1 314 314 EDO EDO . W 2 EDO D 1 315 315 EDO EDO . X 2 EDO D 1 319 319 EDO EDO . Y 2 EDO D 1 322 322 EDO EDO . Z 2 EDO D 1 324 324 EDO EDO . AA 2 EDO E 1 308 308 EDO EDO . BA 2 EDO E 1 312 312 EDO EDO . CA 2 EDO E 1 313 313 EDO EDO . DA 2 EDO E 1 325 325 EDO EDO . EA 3 HOH A 1 324 13 HOH HOH . EA 3 HOH A 2 325 18 HOH HOH . EA 3 HOH A 3 326 31 HOH HOH . EA 3 HOH A 4 327 36 HOH HOH . EA 3 HOH A 5 328 44 HOH HOH . EA 3 HOH A 6 329 50 HOH HOH . EA 3 HOH A 7 330 52 HOH HOH . EA 3 HOH A 8 331 54 HOH HOH . EA 3 HOH A 9 332 55 HOH HOH . EA 3 HOH A 10 333 58 HOH HOH . EA 3 HOH A 11 334 60 HOH HOH . EA 3 HOH A 12 335 70 HOH HOH . EA 3 HOH A 13 336 71 HOH HOH . EA 3 HOH A 14 337 80 HOH HOH . EA 3 HOH A 15 338 84 HOH HOH . EA 3 HOH A 16 339 87 HOH HOH . EA 3 HOH A 17 340 95 HOH HOH . EA 3 HOH A 18 341 97 HOH HOH . EA 3 HOH A 19 342 99 HOH HOH . EA 3 HOH A 20 343 105 HOH HOH . EA 3 HOH A 21 344 107 HOH HOH . EA 3 HOH A 22 345 121 HOH HOH . EA 3 HOH A 23 346 123 HOH HOH . EA 3 HOH A 24 347 131 HOH HOH . EA 3 HOH A 25 348 133 HOH HOH . EA 3 HOH A 26 349 143 HOH HOH . EA 3 HOH A 27 350 144 HOH HOH . EA 3 HOH A 28 351 148 HOH HOH . EA 3 HOH A 29 352 155 HOH HOH . EA 3 HOH A 30 353 176 HOH HOH . EA 3 HOH A 31 354 182 HOH HOH . EA 3 HOH A 32 355 198 HOH HOH . EA 3 HOH A 33 356 199 HOH HOH . EA 3 HOH A 34 357 200 HOH HOH . EA 3 HOH A 35 358 201 HOH HOH . EA 3 HOH A 36 359 203 HOH HOH . EA 3 HOH A 37 360 206 HOH HOH . EA 3 HOH A 38 361 207 HOH HOH . EA 3 HOH A 39 362 210 HOH HOH . EA 3 HOH A 40 363 222 HOH HOH . EA 3 HOH A 41 364 224 HOH HOH . EA 3 HOH A 42 365 232 HOH HOH . EA 3 HOH A 43 366 233 HOH HOH . EA 3 HOH A 44 367 235 HOH HOH . EA 3 HOH A 45 368 238 HOH HOH . EA 3 HOH A 46 369 241 HOH HOH . EA 3 HOH A 47 370 245 HOH HOH . EA 3 HOH A 48 371 251 HOH HOH . EA 3 HOH A 49 372 253 HOH HOH . EA 3 HOH A 50 373 254 HOH HOH . EA 3 HOH A 51 374 258 HOH HOH . FA 3 HOH B 1 321 5 HOH HOH . FA 3 HOH B 2 322 19 HOH HOH . FA 3 HOH B 3 323 27 HOH HOH . FA 3 HOH B 4 324 62 HOH HOH . FA 3 HOH B 5 325 67 HOH HOH . FA 3 HOH B 6 326 74 HOH HOH . FA 3 HOH B 7 327 85 HOH HOH . FA 3 HOH B 8 328 100 HOH HOH . FA 3 HOH B 9 329 102 HOH HOH . FA 3 HOH B 10 330 109 HOH HOH . FA 3 HOH B 11 331 110 HOH HOH . FA 3 HOH B 12 332 126 HOH HOH . FA 3 HOH B 13 333 140 HOH HOH . FA 3 HOH B 14 334 146 HOH HOH . FA 3 HOH B 15 335 149 HOH HOH . FA 3 HOH B 16 336 153 HOH HOH . FA 3 HOH B 17 337 175 HOH HOH . FA 3 HOH B 18 338 177 HOH HOH . FA 3 HOH B 19 339 202 HOH HOH . FA 3 HOH B 20 340 204 HOH HOH . FA 3 HOH B 21 341 209 HOH HOH . FA 3 HOH B 22 342 214 HOH HOH . FA 3 HOH B 23 343 223 HOH HOH . FA 3 HOH B 24 344 225 HOH HOH . FA 3 HOH B 25 345 228 HOH HOH . FA 3 HOH B 26 346 231 HOH HOH . FA 3 HOH B 27 347 244 HOH HOH . GA 3 HOH C 1 322 1 HOH HOH . GA 3 HOH C 2 323 3 HOH HOH . GA 3 HOH C 3 324 9 HOH HOH . GA 3 HOH C 4 325 10 HOH HOH . GA 3 HOH C 5 326 12 HOH HOH . GA 3 HOH C 6 327 14 HOH HOH . GA 3 HOH C 7 328 15 HOH HOH . GA 3 HOH C 8 329 16 HOH HOH . GA 3 HOH C 9 330 20 HOH HOH . GA 3 HOH C 10 331 29 HOH HOH . GA 3 HOH C 11 332 30 HOH HOH . GA 3 HOH C 12 333 32 HOH HOH . GA 3 HOH C 13 334 33 HOH HOH . GA 3 HOH C 14 335 41 HOH HOH . GA 3 HOH C 15 336 42 HOH HOH . GA 3 HOH C 16 337 46 HOH HOH . GA 3 HOH C 17 338 47 HOH HOH . GA 3 HOH C 18 339 64 HOH HOH . GA 3 HOH C 19 340 72 HOH HOH . GA 3 HOH C 20 341 73 HOH HOH . GA 3 HOH C 21 342 75 HOH HOH . GA 3 HOH C 22 343 77 HOH HOH . GA 3 HOH C 23 344 82 HOH HOH . GA 3 HOH C 24 345 86 HOH HOH . GA 3 HOH C 25 346 92 HOH HOH . GA 3 HOH C 26 347 98 HOH HOH . GA 3 HOH C 27 348 114 HOH HOH . GA 3 HOH C 28 349 116 HOH HOH . GA 3 HOH C 29 350 120 HOH HOH . GA 3 HOH C 30 351 136 HOH HOH . GA 3 HOH C 31 352 137 HOH HOH . GA 3 HOH C 32 353 145 HOH HOH . GA 3 HOH C 33 354 152 HOH HOH . GA 3 HOH C 34 355 154 HOH HOH . GA 3 HOH C 35 356 158 HOH HOH . GA 3 HOH C 36 357 160 HOH HOH . GA 3 HOH C 37 358 161 HOH HOH . GA 3 HOH C 38 359 162 HOH HOH . GA 3 HOH C 39 360 164 HOH HOH . GA 3 HOH C 40 361 169 HOH HOH . GA 3 HOH C 41 362 178 HOH HOH . GA 3 HOH C 42 363 181 HOH HOH . GA 3 HOH C 43 364 188 HOH HOH . GA 3 HOH C 44 365 190 HOH HOH . GA 3 HOH C 45 366 191 HOH HOH . GA 3 HOH C 46 367 192 HOH HOH . GA 3 HOH C 47 368 193 HOH HOH . GA 3 HOH C 48 369 212 HOH HOH . GA 3 HOH C 49 370 215 HOH HOH . GA 3 HOH C 50 371 221 HOH HOH . GA 3 HOH C 51 372 237 HOH HOH . GA 3 HOH C 52 373 242 HOH HOH . GA 3 HOH C 53 374 248 HOH HOH . GA 3 HOH C 54 375 250 HOH HOH . GA 3 HOH C 55 376 252 HOH HOH . GA 3 HOH C 56 377 259 HOH HOH . HA 3 HOH D 1 325 2 HOH HOH . HA 3 HOH D 2 326 4 HOH HOH . HA 3 HOH D 3 327 6 HOH HOH . HA 3 HOH D 4 328 7 HOH HOH . HA 3 HOH D 5 329 8 HOH HOH . HA 3 HOH D 6 330 11 HOH HOH . HA 3 HOH D 7 331 17 HOH HOH . HA 3 HOH D 8 332 22 HOH HOH . HA 3 HOH D 9 333 23 HOH HOH . HA 3 HOH D 10 334 25 HOH HOH . HA 3 HOH D 11 335 26 HOH HOH . HA 3 HOH D 12 336 34 HOH HOH . HA 3 HOH D 13 337 35 HOH HOH . HA 3 HOH D 14 338 38 HOH HOH . HA 3 HOH D 15 339 39 HOH HOH . HA 3 HOH D 16 340 43 HOH HOH . HA 3 HOH D 17 341 45 HOH HOH . HA 3 HOH D 18 342 48 HOH HOH . HA 3 HOH D 19 343 49 HOH HOH . HA 3 HOH D 20 344 51 HOH HOH . HA 3 HOH D 21 345 53 HOH HOH . HA 3 HOH D 22 346 59 HOH HOH . HA 3 HOH D 23 347 63 HOH HOH . HA 3 HOH D 24 348 65 HOH HOH . HA 3 HOH D 25 349 66 HOH HOH . HA 3 HOH D 26 350 68 HOH HOH . HA 3 HOH D 27 351 76 HOH HOH . HA 3 HOH D 28 352 78 HOH HOH . HA 3 HOH D 29 353 79 HOH HOH . HA 3 HOH D 30 354 81 HOH HOH . HA 3 HOH D 31 355 83 HOH HOH . HA 3 HOH D 32 356 88 HOH HOH . HA 3 HOH D 33 357 89 HOH HOH . HA 3 HOH D 34 358 94 HOH HOH . HA 3 HOH D 35 359 96 HOH HOH . HA 3 HOH D 36 360 101 HOH HOH . HA 3 HOH D 37 361 103 HOH HOH . HA 3 HOH D 38 362 106 HOH HOH . HA 3 HOH D 39 363 111 HOH HOH . HA 3 HOH D 40 364 112 HOH HOH . HA 3 HOH D 41 365 113 HOH HOH . HA 3 HOH D 42 366 119 HOH HOH . HA 3 HOH D 43 367 122 HOH HOH . HA 3 HOH D 44 368 124 HOH HOH . HA 3 HOH D 45 369 129 HOH HOH . HA 3 HOH D 46 370 130 HOH HOH . HA 3 HOH D 47 371 132 HOH HOH . HA 3 HOH D 48 372 135 HOH HOH . HA 3 HOH D 49 373 139 HOH HOH . HA 3 HOH D 50 374 141 HOH HOH . HA 3 HOH D 51 375 147 HOH HOH . HA 3 HOH D 52 376 150 HOH HOH . HA 3 HOH D 53 377 157 HOH HOH . HA 3 HOH D 54 378 159 HOH HOH . HA 3 HOH D 55 379 163 HOH HOH . HA 3 HOH D 56 380 165 HOH HOH . HA 3 HOH D 57 381 166 HOH HOH . HA 3 HOH D 58 382 172 HOH HOH . HA 3 HOH D 59 383 173 HOH HOH . HA 3 HOH D 60 384 183 HOH HOH . HA 3 HOH D 61 385 184 HOH HOH . HA 3 HOH D 62 386 187 HOH HOH . HA 3 HOH D 63 387 189 HOH HOH . HA 3 HOH D 64 388 194 HOH HOH . HA 3 HOH D 65 389 195 HOH HOH . HA 3 HOH D 66 390 196 HOH HOH . HA 3 HOH D 67 391 197 HOH HOH . HA 3 HOH D 68 392 211 HOH HOH . HA 3 HOH D 69 393 216 HOH HOH . HA 3 HOH D 70 394 217 HOH HOH . HA 3 HOH D 71 395 218 HOH HOH . HA 3 HOH D 72 396 220 HOH HOH . HA 3 HOH D 73 397 229 HOH HOH . HA 3 HOH D 74 398 230 HOH HOH . HA 3 HOH D 75 399 234 HOH HOH . HA 3 HOH D 76 400 236 HOH HOH . HA 3 HOH D 77 401 239 HOH HOH . HA 3 HOH D 78 402 240 HOH HOH . HA 3 HOH D 79 403 246 HOH HOH . HA 3 HOH D 80 404 255 HOH HOH . IA 3 HOH E 1 326 21 HOH HOH . IA 3 HOH E 2 327 24 HOH HOH . IA 3 HOH E 3 328 28 HOH HOH . IA 3 HOH E 4 329 37 HOH HOH . IA 3 HOH E 5 330 40 HOH HOH . IA 3 HOH E 6 331 56 HOH HOH . IA 3 HOH E 7 332 57 HOH HOH . IA 3 HOH E 8 333 61 HOH HOH . IA 3 HOH E 9 334 69 HOH HOH . IA 3 HOH E 10 335 90 HOH HOH . IA 3 HOH E 11 336 91 HOH HOH . IA 3 HOH E 12 337 93 HOH HOH . IA 3 HOH E 13 338 104 HOH HOH . IA 3 HOH E 14 339 108 HOH HOH . IA 3 HOH E 15 340 115 HOH HOH . IA 3 HOH E 16 341 117 HOH HOH . IA 3 HOH E 17 342 118 HOH HOH . IA 3 HOH E 18 343 125 HOH HOH . IA 3 HOH E 19 344 127 HOH HOH . IA 3 HOH E 20 345 128 HOH HOH . IA 3 HOH E 21 346 134 HOH HOH . IA 3 HOH E 22 347 138 HOH HOH . IA 3 HOH E 23 348 142 HOH HOH . IA 3 HOH E 24 349 151 HOH HOH . IA 3 HOH E 25 350 156 HOH HOH . IA 3 HOH E 26 351 167 HOH HOH . IA 3 HOH E 27 352 168 HOH HOH . IA 3 HOH E 28 353 170 HOH HOH . IA 3 HOH E 29 354 171 HOH HOH . IA 3 HOH E 30 355 174 HOH HOH . IA 3 HOH E 31 356 179 HOH HOH . IA 3 HOH E 32 357 180 HOH HOH . IA 3 HOH E 33 358 185 HOH HOH . IA 3 HOH E 34 359 186 HOH HOH . IA 3 HOH E 35 360 205 HOH HOH . IA 3 HOH E 36 361 208 HOH HOH . IA 3 HOH E 37 362 213 HOH HOH . IA 3 HOH E 38 363 219 HOH HOH . IA 3 HOH E 39 364 226 HOH HOH . IA 3 HOH E 40 365 227 HOH HOH . IA 3 HOH E 41 366 243 HOH HOH . IA 3 HOH E 42 367 247 HOH HOH . IA 3 HOH E 43 368 249 HOH HOH . IA 3 HOH E 44 369 256 HOH HOH . IA 3 HOH E 45 370 257 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . S 2 125.415 33.036 5.249 1 68.16 ? C1 EDO 307 D 1 HETATM 2 O O1 EDO . . . S 2 126.008 32.492 4.061 1 68.37 ? O1 EDO 307 D 1 HETATM 3 C C2 EDO . . . S 2 124.898 32.041 6.292 1 68.47 ? C2 EDO 307 D 1 HETATM 4 O O2 EDO . . . S 2 123.478 31.821 6.291 1 68.15 ? O2 EDO 307 D 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #