data_1XJD # _model_server_result.job_id j_60n4NG-fIzjrnSQ7XX8g _model_server_result.datetime_utc '2024-11-30 02:40:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xjd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1XJD # _exptl.entry_id 1XJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.24 _cell.angle_gamma 90 _cell.entry_id 1XJD _cell.length_a 139.566 _cell.length_b 42.4 _cell.length_c 67.678 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASN 176 A ASN 537 1_555 A N TPO 177 A TPO 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale2 A C TPO 177 A TPO 538 1_555 A N PHE 178 A PHE 539 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C PHE 333 A PHE 694 1_555 A N SEP 334 A SEP 695 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C SEP 334 A SEP 695 1_555 A N PHE 335 A PHE 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 308 n n O4 C21 STU sing 309 n n C25 C24 STU sing 310 n n C25 N3 STU sing 311 n n C25 H25 STU sing 312 n n C24 C23 STU sing 313 n n C24 H241 STU sing 314 n n C24 H242 STU sing 315 n n C23 C22 STU sing 316 n n C23 N4 STU sing 317 n n C23 H23 STU sing 318 n n C22 C21 STU sing 319 n n C22 O6 STU sing 320 n n C22 H22 STU sing 321 n n C21 C26 STU sing 322 n n C21 N2 STU sing 323 n n C26 H261 STU sing 324 n n C26 H262 STU sing 325 n n C26 H263 STU sing 326 n n N2 C18 STU sing 327 n y N2 C17 STU sing 328 n y C18 C19 STU doub 329 n y C18 C11 STU sing 330 n y C19 C6 STU sing 331 n y C19 N3 STU sing 332 n y C6 C7 STU doub 333 n y C6 C5 STU sing 334 n y C7 C10 STU sing 335 n y C7 C8 STU sing 336 n n C10 C11 STU doub 337 n y C10 C9 STU sing 338 n n C11 C12 STU sing 339 n y C12 C17 STU doub 340 n y C12 C13 STU sing 341 n y C17 C16 STU sing 342 n y C16 C15 STU doub 343 n y C16 H16 STU sing 344 n n C15 C14 STU sing 345 n y C15 H15 STU sing 346 n n C14 C13 STU doub 347 n y C14 H14 STU sing 348 n n C13 H13 STU sing 349 n n C9 N1 STU sing 350 n n C9 H91 STU sing 351 n n C9 H92 STU sing 352 n n N1 C8 STU sing 353 n n N1 HN1 STU sing 354 n n C8 O5 STU doub 355 n n C5 C20 STU doub 356 n y C5 C4 STU sing 357 n y C20 C1 STU sing 358 n y C20 N3 STU sing 359 n y C1 C2 STU doub 360 n y C1 H1 STU sing 361 n n C2 C3 STU sing 362 n y C2 H2 STU sing 363 n n C3 C4 STU doub 364 n y C3 H3 STU sing 365 n n C4 H4 STU sing 366 n n O6 C27 STU sing 367 n n C27 H271 STU sing 368 n n C27 H272 STU sing 369 n n C27 H273 STU sing 370 n n N4 C28 STU sing 371 n n N4 HN4 STU sing 372 n n C28 H281 STU sing 373 n n C28 H282 STU sing 374 n n C28 H283 STU sing 375 n n # _atom_sites.entry_id 1XJD _atom_sites.fract_transf_matrix[1][1] 0.007165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003532 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 STU A 1 200 1 STU STO . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 2 2 HOH HOH . C 3 HOH A 3 3 3 HOH HOH . C 3 HOH A 4 4 4 HOH HOH . C 3 HOH A 5 5 5 HOH HOH . C 3 HOH A 6 6 6 HOH HOH . C 3 HOH A 7 7 7 HOH HOH . C 3 HOH A 8 8 8 HOH HOH . C 3 HOH A 9 9 9 HOH HOH . C 3 HOH A 10 10 10 HOH HOH . C 3 HOH A 11 11 11 HOH HOH . C 3 HOH A 12 12 12 HOH HOH . C 3 HOH A 13 13 13 HOH HOH . C 3 HOH A 14 14 14 HOH HOH . C 3 HOH A 15 15 15 HOH HOH . C 3 HOH A 16 16 16 HOH HOH . C 3 HOH A 17 17 17 HOH HOH . C 3 HOH A 18 18 18 HOH HOH . C 3 HOH A 19 19 19 HOH HOH . C 3 HOH A 20 20 20 HOH HOH . C 3 HOH A 21 21 21 HOH HOH . C 3 HOH A 22 22 22 HOH HOH . C 3 HOH A 23 23 23 HOH HOH . C 3 HOH A 24 24 24 HOH HOH . C 3 HOH A 25 25 25 HOH HOH . C 3 HOH A 26 26 26 HOH HOH . C 3 HOH A 27 27 27 HOH HOH . C 3 HOH A 28 28 28 HOH HOH . C 3 HOH A 29 29 29 HOH HOH . C 3 HOH A 30 30 30 HOH HOH . C 3 HOH A 31 31 31 HOH HOH . C 3 HOH A 32 32 32 HOH HOH . C 3 HOH A 33 33 33 HOH HOH . C 3 HOH A 34 34 34 HOH HOH . C 3 HOH A 35 35 35 HOH HOH . C 3 HOH A 36 36 36 HOH HOH . C 3 HOH A 37 37 37 HOH HOH . C 3 HOH A 38 38 38 HOH HOH . C 3 HOH A 39 39 39 HOH HOH . C 3 HOH A 40 40 40 HOH HOH . C 3 HOH A 41 41 41 HOH HOH . C 3 HOH A 42 42 42 HOH HOH . C 3 HOH A 43 43 43 HOH HOH . C 3 HOH A 44 44 44 HOH HOH . C 3 HOH A 45 45 45 HOH HOH . C 3 HOH A 46 46 46 HOH HOH . C 3 HOH A 47 47 47 HOH HOH . C 3 HOH A 48 48 48 HOH HOH . C 3 HOH A 49 49 49 HOH HOH . C 3 HOH A 50 50 50 HOH HOH . C 3 HOH A 51 51 51 HOH HOH . C 3 HOH A 52 52 52 HOH HOH . C 3 HOH A 53 53 53 HOH HOH . C 3 HOH A 54 54 54 HOH HOH . C 3 HOH A 55 55 55 HOH HOH . C 3 HOH A 56 56 56 HOH HOH . C 3 HOH A 57 57 57 HOH HOH . C 3 HOH A 58 58 58 HOH HOH . C 3 HOH A 59 59 59 HOH HOH . C 3 HOH A 60 60 60 HOH HOH . C 3 HOH A 61 61 61 HOH HOH . C 3 HOH A 62 62 62 HOH HOH . C 3 HOH A 63 63 63 HOH HOH . C 3 HOH A 64 64 64 HOH HOH . C 3 HOH A 65 65 65 HOH HOH . C 3 HOH A 66 66 66 HOH HOH . C 3 HOH A 67 67 67 HOH HOH . C 3 HOH A 68 68 68 HOH HOH . C 3 HOH A 69 69 69 HOH HOH . C 3 HOH A 70 70 70 HOH HOH . C 3 HOH A 71 71 71 HOH HOH . C 3 HOH A 72 72 72 HOH HOH . C 3 HOH A 73 73 73 HOH HOH . C 3 HOH A 74 74 74 HOH HOH . C 3 HOH A 75 75 75 HOH HOH . C 3 HOH A 76 76 76 HOH HOH . C 3 HOH A 77 77 77 HOH HOH . C 3 HOH A 78 78 78 HOH HOH . C 3 HOH A 79 79 79 HOH HOH . C 3 HOH A 80 80 80 HOH HOH . C 3 HOH A 81 81 81 HOH HOH . C 3 HOH A 82 82 82 HOH HOH . C 3 HOH A 83 83 83 HOH HOH . C 3 HOH A 84 84 84 HOH HOH . C 3 HOH A 85 85 85 HOH HOH . C 3 HOH A 86 86 86 HOH HOH . C 3 HOH A 87 87 87 HOH HOH . C 3 HOH A 88 88 88 HOH HOH . C 3 HOH A 89 89 89 HOH HOH . C 3 HOH A 90 90 90 HOH HOH . C 3 HOH A 91 91 91 HOH HOH . C 3 HOH A 92 92 92 HOH HOH . C 3 HOH A 93 93 93 HOH HOH . C 3 HOH A 94 94 94 HOH HOH . C 3 HOH A 95 95 95 HOH HOH . C 3 HOH A 96 96 96 HOH HOH . C 3 HOH A 97 97 97 HOH HOH . C 3 HOH A 98 98 98 HOH HOH . C 3 HOH A 99 99 99 HOH HOH . C 3 HOH A 100 100 100 HOH HOH . C 3 HOH A 101 101 101 HOH HOH . C 3 HOH A 102 102 102 HOH HOH . C 3 HOH A 103 103 103 HOH HOH . C 3 HOH A 104 104 104 HOH HOH . C 3 HOH A 105 105 105 HOH HOH . C 3 HOH A 106 106 106 HOH HOH . C 3 HOH A 107 107 107 HOH HOH . C 3 HOH A 108 108 108 HOH HOH . C 3 HOH A 109 109 109 HOH HOH . C 3 HOH A 110 110 110 HOH HOH . C 3 HOH A 111 111 111 HOH HOH . C 3 HOH A 112 112 112 HOH HOH . C 3 HOH A 113 113 113 HOH HOH . C 3 HOH A 114 114 114 HOH HOH . C 3 HOH A 115 115 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . B 2 56.126 5.39 2.811 1 21.4 ? O4 STU 200 A 1 HETATM 2 C C25 STU . . . B 2 57.043 5.523 3.938 1 21.48 ? C25 STU 200 A 1 HETATM 3 C C24 STU . . . B 2 56.254 5.136 5.3 1 22.58 ? C24 STU 200 A 1 HETATM 4 C C23 STU . . . B 2 54.712 4.695 5.051 1 22.41 ? C23 STU 200 A 1 HETATM 5 C C22 STU . . . B 2 53.967 5.789 4.219 1 21.57 ? C22 STU 200 A 1 HETATM 6 C C21 STU . . . B 2 54.759 5.875 2.756 1 20.72 ? C21 STU 200 A 1 HETATM 7 C C26 STU . . . B 2 54.119 4.791 1.859 1 21.87 ? C26 STU 200 A 1 HETATM 8 N N2 STU . . . B 2 54.678 7.38 2.283 1 20.08 ? N2 STU 200 A 1 HETATM 9 C C18 STU . . . B 2 55.759 8.309 2.603 1 19.8 ? C18 STU 200 A 1 HETATM 10 C C19 STU . . . B 2 56.975 8.152 3.343 1 20.78 ? C19 STU 200 A 1 HETATM 11 C C6 STU . . . B 2 57.931 9.292 3.545 1 19.72 ? C6 STU 200 A 1 HETATM 12 C C7 STU . . . B 2 57.488 10.647 2.887 1 19.44 ? C7 STU 200 A 1 HETATM 13 C C10 STU . . . B 2 56.331 10.786 2.2 1 19.21 ? C10 STU 200 A 1 HETATM 14 C C11 STU . . . B 2 55.387 9.642 1.986 1 19.47 ? C11 STU 200 A 1 HETATM 15 C C12 STU . . . B 2 54.129 9.482 1.354 1 19.14 ? C12 STU 200 A 1 HETATM 16 C C17 STU . . . B 2 53.682 8.044 1.472 1 19.9 ? C17 STU 200 A 1 HETATM 17 C C16 STU . . . B 2 52.377 7.645 0.89 1 20.47 ? C16 STU 200 A 1 HETATM 18 C C15 STU . . . B 2 51.571 8.563 0.145 1 18.71 ? C15 STU 200 A 1 HETATM 19 C C14 STU . . . B 2 52.012 9.993 -0.013 1 17.84 ? C14 STU 200 A 1 HETATM 20 C C13 STU . . . B 2 53.28 10.398 0.573 1 17.85 ? C13 STU 200 A 1 HETATM 21 C C9 STU . . . B 2 56.206 12.205 1.7 1 18.62 ? C9 STU 200 A 1 HETATM 22 N N1 STU . . . B 2 57.427 12.742 2.229 1 18.27 ? N1 STU 200 A 1 HETATM 23 C C8 STU . . . B 2 58.213 11.942 2.911 1 19.74 ? C8 STU 200 A 1 HETATM 24 O O5 STU . . . B 2 59.277 12.216 3.424 1 21.44 ? O5 STU 200 A 1 HETATM 25 C C5 STU . . . B 2 58.992 8.833 4.33 1 21.14 ? C5 STU 200 A 1 HETATM 26 C C20 STU . . . B 2 58.755 7.365 4.59 1 22.15 ? C20 STU 200 A 1 HETATM 27 C C1 STU . . . B 2 59.705 6.568 5.431 1 22.07 ? C1 STU 200 A 1 HETATM 28 C C2 STU . . . B 2 60.918 7.223 5.917 1 22.36 ? C2 STU 200 A 1 HETATM 29 C C3 STU . . . B 2 61.177 8.665 5.634 1 21.99 ? C3 STU 200 A 1 HETATM 30 C C4 STU . . . B 2 60.241 9.426 4.84 1 21.85 ? C4 STU 200 A 1 HETATM 31 N N3 STU . . . B 2 57.542 6.993 4.044 1 21.06 ? N3 STU 200 A 1 HETATM 32 O O6 STU . . . B 2 54.005 7.111 4.939 1 22.98 ? O6 STU 200 A 1 HETATM 33 C C27 STU . . . B 2 52.783 7.836 4.894 1 21.48 ? C27 STU 200 A 1 HETATM 34 N N4 STU . . . B 2 54.087 4.411 6.485 1 25.14 ? N4 STU 200 A 1 HETATM 35 C C28 STU . . . B 2 54.826 3.3 7.233 1 24.32 ? C28 STU 200 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 319 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #