data_1XJF # _model_server_result.job_id rL6kBnyF3aUHLys1LYu0Qg _model_server_result.datetime_utc '2024-11-13 05:49:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xjf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1003}' # _entry.id 1XJF # _exptl.entry_id 1XJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.82 _cell.angle_gamma 90 _cell.entry_id 1XJF _cell.length_a 116.3 _cell.length_b 123.76 _cell.length_c 107.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 134 A CYS 134 1_555 A SG CYS 333 A CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? disulf ? disulf2 B SG CYS 134 B CYS 134 1_555 B SG CYS 333 B CYS 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc1 D O2B DTP . A DTP 1002 1_555 C MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.78 ? metalc ? metalc2 D O1A DTP . A DTP 1002 1_555 C MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc3 D O2G DTP . A DTP 1002 1_555 C MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc4 F O2B DTP . B DTP 1001 1_555 E MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.209 ? metalc ? metalc5 F O2G DTP . B DTP 1001 1_555 E MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc6 F O1A DTP . B DTP 1001 1_555 E MG MG . B MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XJF _atom_sites.fract_transf_matrix[1][1] 0.008598 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00808 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009622 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 1004 1004 MG MG . D 3 DTP A 1 1002 1002 DTP DTP . E 2 MG B 1 1003 1003 MG MG . F 3 DTP B 1 1001 1001 DTP DTP . G 4 HOH A 1 1005 1 HOH HOH . G 4 HOH A 2 1006 2 HOH HOH . G 4 HOH A 3 1007 4 HOH HOH . G 4 HOH A 4 1008 5 HOH HOH . G 4 HOH A 5 1009 8 HOH HOH . G 4 HOH A 6 1010 10 HOH HOH . G 4 HOH A 7 1011 12 HOH HOH . G 4 HOH A 8 1012 18 HOH HOH . G 4 HOH A 9 1013 19 HOH HOH . G 4 HOH A 10 1014 24 HOH HOH . G 4 HOH A 11 1015 25 HOH HOH . G 4 HOH A 12 1016 27 HOH HOH . G 4 HOH A 13 1017 31 HOH HOH . G 4 HOH A 14 1018 38 HOH HOH . G 4 HOH A 15 1019 41 HOH HOH . G 4 HOH A 16 1020 42 HOH HOH . G 4 HOH A 17 1021 43 HOH HOH . G 4 HOH A 18 1022 45 HOH HOH . G 4 HOH A 19 1023 47 HOH HOH . G 4 HOH A 20 1024 48 HOH HOH . G 4 HOH A 21 1025 51 HOH HOH . G 4 HOH A 22 1026 52 HOH HOH . G 4 HOH A 23 1027 53 HOH HOH . G 4 HOH A 24 1028 54 HOH HOH . G 4 HOH A 25 1029 57 HOH HOH . G 4 HOH A 26 1030 58 HOH HOH . G 4 HOH A 27 1031 59 HOH HOH . G 4 HOH A 28 1032 61 HOH HOH . G 4 HOH A 29 1033 63 HOH HOH . G 4 HOH A 30 1034 64 HOH HOH . G 4 HOH A 31 1035 66 HOH HOH . G 4 HOH A 32 1036 67 HOH HOH . G 4 HOH A 33 1037 68 HOH HOH . G 4 HOH A 34 1038 69 HOH HOH . G 4 HOH A 35 1039 70 HOH HOH . G 4 HOH A 36 1040 71 HOH HOH . G 4 HOH A 37 1041 72 HOH HOH . G 4 HOH A 38 1042 73 HOH HOH . G 4 HOH A 39 1043 75 HOH HOH . G 4 HOH A 40 1044 76 HOH HOH . G 4 HOH A 41 1045 77 HOH HOH . G 4 HOH A 42 1046 78 HOH HOH . G 4 HOH A 43 1047 80 HOH HOH . G 4 HOH A 44 1048 81 HOH HOH . G 4 HOH A 45 1049 85 HOH HOH . G 4 HOH A 46 1050 86 HOH HOH . G 4 HOH A 47 1051 87 HOH HOH . G 4 HOH A 48 1052 88 HOH HOH . G 4 HOH A 49 1053 93 HOH HOH . G 4 HOH A 50 1054 94 HOH HOH . G 4 HOH A 51 1055 96 HOH HOH . G 4 HOH A 52 1056 98 HOH HOH . G 4 HOH A 53 1057 99 HOH HOH . G 4 HOH A 54 1058 100 HOH HOH . G 4 HOH A 55 1059 102 HOH HOH . G 4 HOH A 56 1060 112 HOH HOH . G 4 HOH A 57 1061 114 HOH HOH . G 4 HOH A 58 1062 115 HOH HOH . G 4 HOH A 59 1063 117 HOH HOH . G 4 HOH A 60 1064 121 HOH HOH . G 4 HOH A 61 1065 122 HOH HOH . G 4 HOH A 62 1066 125 HOH HOH . G 4 HOH A 63 1067 127 HOH HOH . G 4 HOH A 64 1068 130 HOH HOH . G 4 HOH A 65 1069 135 HOH HOH . G 4 HOH A 66 1070 136 HOH HOH . G 4 HOH A 67 1071 139 HOH HOH . G 4 HOH A 68 1072 140 HOH HOH . G 4 HOH A 69 1073 141 HOH HOH . G 4 HOH A 70 1074 145 HOH HOH . G 4 HOH A 71 1075 146 HOH HOH . G 4 HOH A 72 1076 153 HOH HOH . G 4 HOH A 73 1077 154 HOH HOH . G 4 HOH A 74 1078 155 HOH HOH . G 4 HOH A 75 1079 157 HOH HOH . G 4 HOH A 76 1080 158 HOH HOH . G 4 HOH A 77 1081 159 HOH HOH . G 4 HOH A 78 1082 160 HOH HOH . G 4 HOH A 79 1083 161 HOH HOH . G 4 HOH A 80 1084 163 HOH HOH . G 4 HOH A 81 1085 164 HOH HOH . G 4 HOH A 82 1086 165 HOH HOH . G 4 HOH A 83 1087 167 HOH HOH . G 4 HOH A 84 1088 169 HOH HOH . G 4 HOH A 85 1089 170 HOH HOH . G 4 HOH A 86 1090 175 HOH HOH . G 4 HOH A 87 1091 176 HOH HOH . G 4 HOH A 88 1092 177 HOH HOH . G 4 HOH A 89 1093 179 HOH HOH . G 4 HOH A 90 1094 181 HOH HOH . G 4 HOH A 91 1095 183 HOH HOH . G 4 HOH A 92 1096 184 HOH HOH . G 4 HOH A 93 1097 186 HOH HOH . G 4 HOH A 94 1098 187 HOH HOH . G 4 HOH A 95 1099 188 HOH HOH . G 4 HOH A 96 1100 196 HOH HOH . G 4 HOH A 97 1101 200 HOH HOH . G 4 HOH A 98 1102 201 HOH HOH . G 4 HOH A 99 1103 202 HOH HOH . G 4 HOH A 100 1104 208 HOH HOH . G 4 HOH A 101 1105 210 HOH HOH . G 4 HOH A 102 1106 213 HOH HOH . G 4 HOH A 103 1107 217 HOH HOH . G 4 HOH A 104 1108 224 HOH HOH . G 4 HOH A 105 1109 225 HOH HOH . G 4 HOH A 106 1110 227 HOH HOH . G 4 HOH A 107 1111 229 HOH HOH . G 4 HOH A 108 1112 231 HOH HOH . G 4 HOH A 109 1113 232 HOH HOH . G 4 HOH A 110 1114 233 HOH HOH . G 4 HOH A 111 1115 235 HOH HOH . G 4 HOH A 112 1116 237 HOH HOH . G 4 HOH A 113 1117 239 HOH HOH . G 4 HOH A 114 1118 240 HOH HOH . G 4 HOH A 115 1119 241 HOH HOH . G 4 HOH A 116 1120 244 HOH HOH . G 4 HOH A 117 1121 248 HOH HOH . G 4 HOH A 118 1122 249 HOH HOH . G 4 HOH A 119 1123 251 HOH HOH . G 4 HOH A 120 1124 254 HOH HOH . G 4 HOH A 121 1125 256 HOH HOH . H 4 HOH B 1 1004 3 HOH HOH . H 4 HOH B 2 1005 6 HOH HOH . H 4 HOH B 3 1006 7 HOH HOH . H 4 HOH B 4 1007 9 HOH HOH . H 4 HOH B 5 1008 11 HOH HOH . H 4 HOH B 6 1009 13 HOH HOH . H 4 HOH B 7 1010 14 HOH HOH . H 4 HOH B 8 1011 15 HOH HOH . H 4 HOH B 9 1012 16 HOH HOH . H 4 HOH B 10 1013 17 HOH HOH . H 4 HOH B 11 1014 20 HOH HOH . H 4 HOH B 12 1015 21 HOH HOH . H 4 HOH B 13 1016 22 HOH HOH . H 4 HOH B 14 1017 23 HOH HOH . H 4 HOH B 15 1018 26 HOH HOH . H 4 HOH B 16 1019 28 HOH HOH . H 4 HOH B 17 1020 29 HOH HOH . H 4 HOH B 18 1021 30 HOH HOH . H 4 HOH B 19 1022 32 HOH HOH . H 4 HOH B 20 1023 33 HOH HOH . H 4 HOH B 21 1024 34 HOH HOH . H 4 HOH B 22 1025 35 HOH HOH . H 4 HOH B 23 1026 36 HOH HOH . H 4 HOH B 24 1027 37 HOH HOH . H 4 HOH B 25 1028 39 HOH HOH . H 4 HOH B 26 1029 40 HOH HOH . H 4 HOH B 27 1030 44 HOH HOH . H 4 HOH B 28 1031 46 HOH HOH . H 4 HOH B 29 1032 49 HOH HOH . H 4 HOH B 30 1033 50 HOH HOH . H 4 HOH B 31 1034 55 HOH HOH . H 4 HOH B 32 1035 56 HOH HOH . H 4 HOH B 33 1036 60 HOH HOH . H 4 HOH B 34 1037 62 HOH HOH . H 4 HOH B 35 1038 65 HOH HOH . H 4 HOH B 36 1039 74 HOH HOH . H 4 HOH B 37 1040 79 HOH HOH . H 4 HOH B 38 1041 82 HOH HOH . H 4 HOH B 39 1042 83 HOH HOH . H 4 HOH B 40 1043 84 HOH HOH . H 4 HOH B 41 1044 89 HOH HOH . H 4 HOH B 42 1045 90 HOH HOH . H 4 HOH B 43 1046 91 HOH HOH . H 4 HOH B 44 1047 92 HOH HOH . H 4 HOH B 45 1048 95 HOH HOH . H 4 HOH B 46 1049 97 HOH HOH . H 4 HOH B 47 1050 101 HOH HOH . H 4 HOH B 48 1051 103 HOH HOH . H 4 HOH B 49 1052 104 HOH HOH . H 4 HOH B 50 1053 105 HOH HOH . H 4 HOH B 51 1054 106 HOH HOH . H 4 HOH B 52 1055 107 HOH HOH . H 4 HOH B 53 1056 108 HOH HOH . H 4 HOH B 54 1057 109 HOH HOH . H 4 HOH B 55 1058 110 HOH HOH . H 4 HOH B 56 1059 111 HOH HOH . H 4 HOH B 57 1060 113 HOH HOH . H 4 HOH B 58 1061 116 HOH HOH . H 4 HOH B 59 1062 118 HOH HOH . H 4 HOH B 60 1063 119 HOH HOH . H 4 HOH B 61 1064 120 HOH HOH . H 4 HOH B 62 1065 123 HOH HOH . H 4 HOH B 63 1066 124 HOH HOH . H 4 HOH B 64 1067 126 HOH HOH . H 4 HOH B 65 1068 128 HOH HOH . H 4 HOH B 66 1069 129 HOH HOH . H 4 HOH B 67 1070 131 HOH HOH . H 4 HOH B 68 1071 132 HOH HOH . H 4 HOH B 69 1072 133 HOH HOH . H 4 HOH B 70 1073 134 HOH HOH . H 4 HOH B 71 1074 137 HOH HOH . H 4 HOH B 72 1075 138 HOH HOH . H 4 HOH B 73 1076 142 HOH HOH . H 4 HOH B 74 1077 143 HOH HOH . H 4 HOH B 75 1078 144 HOH HOH . H 4 HOH B 76 1079 147 HOH HOH . H 4 HOH B 77 1080 148 HOH HOH . H 4 HOH B 78 1081 149 HOH HOH . H 4 HOH B 79 1082 150 HOH HOH . H 4 HOH B 80 1083 151 HOH HOH . H 4 HOH B 81 1084 152 HOH HOH . H 4 HOH B 82 1085 156 HOH HOH . H 4 HOH B 83 1086 162 HOH HOH . H 4 HOH B 84 1087 166 HOH HOH . H 4 HOH B 85 1088 168 HOH HOH . H 4 HOH B 86 1089 171 HOH HOH . H 4 HOH B 87 1090 172 HOH HOH . H 4 HOH B 88 1091 173 HOH HOH . H 4 HOH B 89 1092 174 HOH HOH . H 4 HOH B 90 1093 178 HOH HOH . H 4 HOH B 91 1094 180 HOH HOH . H 4 HOH B 92 1095 182 HOH HOH . H 4 HOH B 93 1096 185 HOH HOH . H 4 HOH B 94 1097 195 HOH HOH . H 4 HOH B 95 1098 197 HOH HOH . H 4 HOH B 96 1099 198 HOH HOH . H 4 HOH B 97 1100 199 HOH HOH . H 4 HOH B 98 1101 203 HOH HOH . H 4 HOH B 99 1102 205 HOH HOH . H 4 HOH B 100 1103 206 HOH HOH . H 4 HOH B 101 1104 207 HOH HOH . H 4 HOH B 102 1105 209 HOH HOH . H 4 HOH B 103 1106 211 HOH HOH . H 4 HOH B 104 1107 212 HOH HOH . H 4 HOH B 105 1108 214 HOH HOH . H 4 HOH B 106 1109 215 HOH HOH . H 4 HOH B 107 1110 216 HOH HOH . H 4 HOH B 108 1111 218 HOH HOH . H 4 HOH B 109 1112 219 HOH HOH . H 4 HOH B 110 1113 220 HOH HOH . H 4 HOH B 111 1114 221 HOH HOH . H 4 HOH B 112 1115 222 HOH HOH . H 4 HOH B 113 1116 226 HOH HOH . H 4 HOH B 114 1117 228 HOH HOH . H 4 HOH B 115 1118 230 HOH HOH . H 4 HOH B 116 1119 234 HOH HOH . H 4 HOH B 117 1120 236 HOH HOH . H 4 HOH B 118 1121 238 HOH HOH . H 4 HOH B 119 1122 242 HOH HOH . H 4 HOH B 120 1123 243 HOH HOH . H 4 HOH B 121 1124 245 HOH HOH . H 4 HOH B 122 1125 246 HOH HOH . H 4 HOH B 123 1126 247 HOH HOH . H 4 HOH B 124 1127 250 HOH HOH . H 4 HOH B 125 1128 252 HOH HOH . H 4 HOH B 126 1129 253 HOH HOH . H 4 HOH B 127 1130 255 HOH HOH . H 4 HOH B 128 1131 257 HOH HOH . H 4 HOH B 129 1132 258 HOH HOH . H 4 HOH B 130 1133 259 HOH HOH . H 4 HOH B 131 1134 260 HOH HOH . H 4 HOH B 132 1135 261 HOH HOH . H 4 HOH B 133 1136 262 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 2 _atom_site.Cartn_x -69.56 _atom_site.Cartn_y -63.514 _atom_site.Cartn_z -14.178 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 48.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #