data_1XJI # _model_server_result.job_id LkQhr_pHzLf-oBNwU1pc1g _model_server_result.datetime_utc '2024-10-18 19:23:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1XJI # _exptl.entry_id 1XJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XJI _cell.length_a 44.658 _cell.length_b 102.515 _cell.length_c 128.243 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 215 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 482 n n C1 C6 RET sing 483 n n C1 C16 RET sing 484 n n C1 C17 RET sing 485 n n C2 C3 RET sing 486 n n C2 H21 RET sing 487 n n C2 H22 RET sing 488 n n C3 C4 RET sing 489 n n C3 H31 RET sing 490 n n C3 H32 RET sing 491 n n C4 C5 RET sing 492 n n C4 H41 RET sing 493 n n C4 H42 RET sing 494 n n C5 C6 RET doub 495 n n C5 C18 RET sing 496 n n C6 C7 RET sing 497 n n C7 C8 RET doub 498 e n C7 H7 RET sing 499 n n C8 C9 RET sing 500 n n C8 H8 RET sing 501 n n C9 C10 RET doub 502 e n C9 C19 RET sing 503 n n C10 C11 RET sing 504 n n C10 H10 RET sing 505 n n C11 C12 RET doub 506 e n C11 H11 RET sing 507 n n C12 C13 RET sing 508 n n C12 H12 RET sing 509 n n C13 C14 RET doub 510 e n C13 C20 RET sing 511 n n C14 C15 RET sing 512 n n C14 H14 RET sing 513 n n C15 O1 RET doub 514 n n C15 H15 RET sing 515 n n C16 H161 RET sing 516 n n C16 H162 RET sing 517 n n C16 H163 RET sing 518 n n C17 H171 RET sing 519 n n C17 H172 RET sing 520 n n C17 H173 RET sing 521 n n C18 H181 RET sing 522 n n C18 H182 RET sing 523 n n C18 H183 RET sing 524 n n C19 H191 RET sing 525 n n C19 H192 RET sing 526 n n C19 H193 RET sing 527 n n C20 H201 RET sing 528 n n C20 H202 RET sing 529 n n C20 H203 RET sing 530 n n # _atom_sites.entry_id 1XJI _atom_sites.fract_transf_matrix[1][1] 0.022392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 401 401 D12 D12 . D 4 D10 A 1 402 402 D10 D10 . E 5 C14 A 1 403 403 C14 C14 . F 6 OCT A 1 404 404 OCT OCT . G 4 D10 A 1 405 405 D10 D10 . H 6 OCT A 1 406 406 OCT OCT . I 4 D10 A 1 407 407 D10 D10 . J 6 OCT A 1 408 408 OCT OCT . K 4 D10 A 1 409 409 D10 D10 . L 4 D10 A 1 410 410 D10 D10 . M 4 D10 A 1 411 411 D10 D10 . N 7 CPS A 1 501 501 CPS CPS . O 8 HOH A 1 502 1 HOH HOH . O 8 HOH A 2 503 2 HOH HOH . O 8 HOH A 3 504 3 HOH HOH . O 8 HOH A 4 505 4 HOH HOH . O 8 HOH A 5 506 5 HOH HOH . O 8 HOH A 6 507 6 HOH HOH . O 8 HOH A 7 508 7 HOH HOH . O 8 HOH A 8 509 8 HOH HOH . O 8 HOH A 9 510 9 HOH HOH . O 8 HOH A 10 511 10 HOH HOH . O 8 HOH A 11 512 11 HOH HOH . O 8 HOH A 12 513 12 HOH HOH . O 8 HOH A 13 514 13 HOH HOH . O 8 HOH A 14 515 15 HOH HOH . O 8 HOH A 15 516 16 HOH HOH . O 8 HOH A 16 517 17 HOH HOH . O 8 HOH A 17 518 18 HOH HOH . O 8 HOH A 18 519 19 HOH HOH . O 8 HOH A 19 520 20 HOH HOH . O 8 HOH A 20 521 21 HOH HOH . O 8 HOH A 21 522 22 HOH HOH . O 8 HOH A 22 523 23 HOH HOH . O 8 HOH A 23 524 24 HOH HOH . O 8 HOH A 24 525 25 HOH HOH . O 8 HOH A 25 526 26 HOH HOH . O 8 HOH A 26 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -3.683 -10.341 -3.101 1 19.77 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -4.458 -9.789 -4.322 1 18.87 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -5.028 -8.417 -4.228 1 20.26 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -5.693 -8.068 -2.894 1 19.78 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -4.952 -8.561 -1.62 1 20.39 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -4.015 -9.614 -1.709 1 19.72 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -3.365 -9.971 -0.41 1 17.84 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -2.413 -10.897 -0.112 1 16.39 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -1.808 -11.195 1.164 1 18.53 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -0.858 -12.182 1.041 1 15 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -0.084 -12.64 2.193 1 19.51 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 0.794 -13.623 1.856 1 20.28 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 1.699 -14.272 2.796 1 21.79 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 2.434 -15.237 2.143 1 23.63 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 3.412 -16.078 2.778 1 26.54 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -4.055 -11.877 -3.034 1 18.31 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -2.17 -10.174 -3.551 1 19.66 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -5.414 -7.748 -0.447 1 19.19 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -2.192 -10.469 2.443 1 13.9 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 1.774 -13.921 4.258 1 19.24 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #