data_1XJI # _model_server_result.job_id ljNND0dMOY-j2LaVBrxHrw _model_server_result.datetime_utc '2024-10-18 19:25:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1XJI # _exptl.entry_id 1XJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 170.335 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DODECANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XJI _cell.length_a 44.658 _cell.length_b 102.515 _cell.length_c 128.243 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 215 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H26' _chem_comp.formula_weight 170.335 _chem_comp.id D12 _chem_comp.mon_nstd_flag . _chem_comp.name DODECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D12 sing 247 n n C1 H11 D12 sing 248 n n C1 H12 D12 sing 249 n n C1 H13 D12 sing 250 n n C2 C3 D12 sing 251 n n C2 H21 D12 sing 252 n n C2 H22 D12 sing 253 n n C3 C4 D12 sing 254 n n C3 H31 D12 sing 255 n n C3 H32 D12 sing 256 n n C4 C5 D12 sing 257 n n C4 H41 D12 sing 258 n n C4 H42 D12 sing 259 n n C5 C6 D12 sing 260 n n C5 H51 D12 sing 261 n n C5 H52 D12 sing 262 n n C6 C7 D12 sing 263 n n C6 H61 D12 sing 264 n n C6 H62 D12 sing 265 n n C7 C8 D12 sing 266 n n C7 H71 D12 sing 267 n n C7 H72 D12 sing 268 n n C8 C9 D12 sing 269 n n C8 H81 D12 sing 270 n n C8 H82 D12 sing 271 n n C9 C10 D12 sing 272 n n C9 H91 D12 sing 273 n n C9 H92 D12 sing 274 n n C10 C11 D12 sing 275 n n C10 H101 D12 sing 276 n n C10 H102 D12 sing 277 n n C11 C12 D12 sing 278 n n C11 H111 D12 sing 279 n n C11 H112 D12 sing 280 n n C12 H121 D12 sing 281 n n C12 H122 D12 sing 282 n n C12 H123 D12 sing 283 n n # _atom_sites.entry_id 1XJI _atom_sites.fract_transf_matrix[1][1] 0.022392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 401 401 D12 D12 . D 4 D10 A 1 402 402 D10 D10 . E 5 C14 A 1 403 403 C14 C14 . F 6 OCT A 1 404 404 OCT OCT . G 4 D10 A 1 405 405 D10 D10 . H 6 OCT A 1 406 406 OCT OCT . I 4 D10 A 1 407 407 D10 D10 . J 6 OCT A 1 408 408 OCT OCT . K 4 D10 A 1 409 409 D10 D10 . L 4 D10 A 1 410 410 D10 D10 . M 4 D10 A 1 411 411 D10 D10 . N 7 CPS A 1 501 501 CPS CPS . O 8 HOH A 1 502 1 HOH HOH . O 8 HOH A 2 503 2 HOH HOH . O 8 HOH A 3 504 3 HOH HOH . O 8 HOH A 4 505 4 HOH HOH . O 8 HOH A 5 506 5 HOH HOH . O 8 HOH A 6 507 6 HOH HOH . O 8 HOH A 7 508 7 HOH HOH . O 8 HOH A 8 509 8 HOH HOH . O 8 HOH A 9 510 9 HOH HOH . O 8 HOH A 10 511 10 HOH HOH . O 8 HOH A 11 512 11 HOH HOH . O 8 HOH A 12 513 12 HOH HOH . O 8 HOH A 13 514 13 HOH HOH . O 8 HOH A 14 515 15 HOH HOH . O 8 HOH A 15 516 16 HOH HOH . O 8 HOH A 16 517 17 HOH HOH . O 8 HOH A 17 518 18 HOH HOH . O 8 HOH A 18 519 19 HOH HOH . O 8 HOH A 19 520 20 HOH HOH . O 8 HOH A 20 521 21 HOH HOH . O 8 HOH A 21 522 22 HOH HOH . O 8 HOH A 22 523 23 HOH HOH . O 8 HOH A 23 524 24 HOH HOH . O 8 HOH A 24 525 25 HOH HOH . O 8 HOH A 25 526 26 HOH HOH . O 8 HOH A 26 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D12 . . . C 3 21.311 -22.255 -13.554 1 36.71 ? C1 D12 401 A 1 HETATM 2 C C2 D12 . . . C 3 20.999 -23.303 -12.506 1 36.74 ? C2 D12 401 A 1 HETATM 3 C C3 D12 . . . C 3 20.211 -22.66 -11.384 1 35.33 ? C3 D12 401 A 1 HETATM 4 C C4 D12 . . . C 3 19.866 -23.654 -10.296 1 34.72 ? C4 D12 401 A 1 HETATM 5 C C5 D12 . . . C 3 19.071 -22.989 -9.192 1 36.48 ? C5 D12 401 A 1 HETATM 6 C C6 D12 . . . C 3 18.723 -23.958 -8.073 1 39 ? C6 D12 401 A 1 HETATM 7 C C7 D12 . . . C 3 17.909 -23.272 -6.987 1 41.02 ? C7 D12 401 A 1 HETATM 8 C C8 D12 . . . C 3 17.551 -24.208 -5.841 1 41.13 ? C8 D12 401 A 1 HETATM 9 C C9 D12 . . . C 3 16.744 -25.405 -6.32 1 41.31 ? C9 D12 401 A 1 HETATM 10 C C10 D12 . . . C 3 16.387 -26.314 -5.159 1 42.84 ? C10 D12 401 A 1 HETATM 11 C C11 D12 . . . C 3 15.599 -27.528 -5.611 1 42.73 ? C11 D12 401 A 1 HETATM 12 C C12 D12 . . . C 3 15.266 -28.376 -4.399 1 42.52 ? C12 D12 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 12 #