data_1XJI # _model_server_result.job_id PkCSB1xoFN_5wSd3zklHRw _model_server_result.datetime_utc '2024-10-18 19:23:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":405}' # _entry.id 1XJI # _exptl.entry_id 1XJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 142.282 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DECANE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XJI _cell.length_a 44.658 _cell.length_b 102.515 _cell.length_c 128.243 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 G N N ? 4 I N N ? 4 K N N ? 4 L N N ? 4 M N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 215 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H22' _chem_comp.formula_weight 142.282 _chem_comp.id D10 _chem_comp.mon_nstd_flag . _chem_comp.name DECANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 D10 sing 216 n n C1 H11 D10 sing 217 n n C1 H12 D10 sing 218 n n C1 H13 D10 sing 219 n n C2 C3 D10 sing 220 n n C2 H21 D10 sing 221 n n C2 H22 D10 sing 222 n n C3 C4 D10 sing 223 n n C3 H31 D10 sing 224 n n C3 H32 D10 sing 225 n n C4 C5 D10 sing 226 n n C4 H41 D10 sing 227 n n C4 H42 D10 sing 228 n n C5 C6 D10 sing 229 n n C5 H51 D10 sing 230 n n C5 H52 D10 sing 231 n n C6 C7 D10 sing 232 n n C6 H61 D10 sing 233 n n C6 H62 D10 sing 234 n n C7 C8 D10 sing 235 n n C7 H71 D10 sing 236 n n C7 H72 D10 sing 237 n n C8 C9 D10 sing 238 n n C8 H81 D10 sing 239 n n C8 H82 D10 sing 240 n n C9 C10 D10 sing 241 n n C9 H91 D10 sing 242 n n C9 H92 D10 sing 243 n n C10 H101 D10 sing 244 n n C10 H102 D10 sing 245 n n C10 H103 D10 sing 246 n n # _atom_sites.entry_id 1XJI _atom_sites.fract_transf_matrix[1][1] 0.022392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 401 401 D12 D12 . D 4 D10 A 1 402 402 D10 D10 . E 5 C14 A 1 403 403 C14 C14 . F 6 OCT A 1 404 404 OCT OCT . G 4 D10 A 1 405 405 D10 D10 . H 6 OCT A 1 406 406 OCT OCT . I 4 D10 A 1 407 407 D10 D10 . J 6 OCT A 1 408 408 OCT OCT . K 4 D10 A 1 409 409 D10 D10 . L 4 D10 A 1 410 410 D10 D10 . M 4 D10 A 1 411 411 D10 D10 . N 7 CPS A 1 501 501 CPS CPS . O 8 HOH A 1 502 1 HOH HOH . O 8 HOH A 2 503 2 HOH HOH . O 8 HOH A 3 504 3 HOH HOH . O 8 HOH A 4 505 4 HOH HOH . O 8 HOH A 5 506 5 HOH HOH . O 8 HOH A 6 507 6 HOH HOH . O 8 HOH A 7 508 7 HOH HOH . O 8 HOH A 8 509 8 HOH HOH . O 8 HOH A 9 510 9 HOH HOH . O 8 HOH A 10 511 10 HOH HOH . O 8 HOH A 11 512 11 HOH HOH . O 8 HOH A 12 513 12 HOH HOH . O 8 HOH A 13 514 13 HOH HOH . O 8 HOH A 14 515 15 HOH HOH . O 8 HOH A 15 516 16 HOH HOH . O 8 HOH A 16 517 17 HOH HOH . O 8 HOH A 17 518 18 HOH HOH . O 8 HOH A 18 519 19 HOH HOH . O 8 HOH A 19 520 20 HOH HOH . O 8 HOH A 20 521 21 HOH HOH . O 8 HOH A 21 522 22 HOH HOH . O 8 HOH A 22 523 23 HOH HOH . O 8 HOH A 23 524 24 HOH HOH . O 8 HOH A 24 525 25 HOH HOH . O 8 HOH A 25 526 26 HOH HOH . O 8 HOH A 26 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D10 . . . G 4 -15.881 -13.315 8.464 1 49.86 ? C1 D10 405 A 1 HETATM 2 C C2 D10 . . . G 4 -16.915 -12.269 8.877 1 49.63 ? C2 D10 405 A 1 HETATM 3 C C3 D10 . . . G 4 -16.495 -10.923 8.324 1 48.96 ? C3 D10 405 A 1 HETATM 4 C C4 D10 . . . G 4 -16.402 -11 6.818 1 47.71 ? C4 D10 405 A 1 HETATM 5 C C5 D10 . . . G 4 -15.989 -9.692 6.191 1 47.12 ? C5 D10 405 A 1 HETATM 6 C C6 D10 . . . G 4 -15.935 -9.886 4.694 1 48.19 ? C6 D10 405 A 1 HETATM 7 C C7 D10 . . . G 4 -15.552 -8.637 3.944 1 48.45 ? C7 D10 405 A 1 HETATM 8 C C8 D10 . . . G 4 -15.544 -8.947 2.46 1 50.27 ? C8 D10 405 A 1 HETATM 9 C C9 D10 . . . G 4 -15.178 -7.741 1.627 1 51.62 ? C9 D10 405 A 1 HETATM 10 C C10 D10 . . . G 4 -15.194 -8.138 0.174 1 52.95 ? C10 D10 405 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 10 #