data_1XJI # _model_server_result.job_id v3XDu1nYlVsCR1_SwwM7fw _model_server_result.datetime_utc '2024-10-18 19:33:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xji # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":406}' # _entry.id 1XJI # _exptl.entry_id 1XJI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 114.229 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XJI _cell.length_a 44.658 _cell.length_b 102.515 _cell.length_c 128.243 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 H N N ? 6 J N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 215 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.328 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 417 n n C1 H11 OCT sing 418 n n C1 H12 OCT sing 419 n n C1 H13 OCT sing 420 n n C2 C3 OCT sing 421 n n C2 H21 OCT sing 422 n n C2 H22 OCT sing 423 n n C3 C4 OCT sing 424 n n C3 H31 OCT sing 425 n n C3 H32 OCT sing 426 n n C4 C5 OCT sing 427 n n C4 H41 OCT sing 428 n n C4 H42 OCT sing 429 n n C5 C6 OCT sing 430 n n C5 H51 OCT sing 431 n n C5 H52 OCT sing 432 n n C6 C7 OCT sing 433 n n C6 H61 OCT sing 434 n n C6 H62 OCT sing 435 n n C7 C8 OCT sing 436 n n C7 H71 OCT sing 437 n n C7 H72 OCT sing 438 n n C8 H81 OCT sing 439 n n C8 H82 OCT sing 440 n n C8 H83 OCT sing 441 n n # _atom_sites.entry_id 1XJI _atom_sites.fract_transf_matrix[1][1] 0.022392 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007798 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 D12 A 1 401 401 D12 D12 . D 4 D10 A 1 402 402 D10 D10 . E 5 C14 A 1 403 403 C14 C14 . F 6 OCT A 1 404 404 OCT OCT . G 4 D10 A 1 405 405 D10 D10 . H 6 OCT A 1 406 406 OCT OCT . I 4 D10 A 1 407 407 D10 D10 . J 6 OCT A 1 408 408 OCT OCT . K 4 D10 A 1 409 409 D10 D10 . L 4 D10 A 1 410 410 D10 D10 . M 4 D10 A 1 411 411 D10 D10 . N 7 CPS A 1 501 501 CPS CPS . O 8 HOH A 1 502 1 HOH HOH . O 8 HOH A 2 503 2 HOH HOH . O 8 HOH A 3 504 3 HOH HOH . O 8 HOH A 4 505 4 HOH HOH . O 8 HOH A 5 506 5 HOH HOH . O 8 HOH A 6 507 6 HOH HOH . O 8 HOH A 7 508 7 HOH HOH . O 8 HOH A 8 509 8 HOH HOH . O 8 HOH A 9 510 9 HOH HOH . O 8 HOH A 10 511 10 HOH HOH . O 8 HOH A 11 512 11 HOH HOH . O 8 HOH A 12 513 12 HOH HOH . O 8 HOH A 13 514 13 HOH HOH . O 8 HOH A 14 515 15 HOH HOH . O 8 HOH A 15 516 16 HOH HOH . O 8 HOH A 16 517 17 HOH HOH . O 8 HOH A 17 518 18 HOH HOH . O 8 HOH A 18 519 19 HOH HOH . O 8 HOH A 19 520 20 HOH HOH . O 8 HOH A 20 521 21 HOH HOH . O 8 HOH A 21 522 22 HOH HOH . O 8 HOH A 22 523 23 HOH HOH . O 8 HOH A 23 524 24 HOH HOH . O 8 HOH A 24 525 25 HOH HOH . O 8 HOH A 25 526 26 HOH HOH . O 8 HOH A 26 527 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . H 6 6.141 -31.566 15.727 1 48.7 ? C1 OCT 406 A 1 HETATM 2 C C2 OCT . . . H 6 6.826 -31.277 14.416 1 47.31 ? C2 OCT 406 A 1 HETATM 3 C C3 OCT . . . H 6 5.802 -31.353 13.291 1 47.22 ? C3 OCT 406 A 1 HETATM 4 C C4 OCT . . . H 6 6.475 -31.074 11.97 1 46.11 ? C4 OCT 406 A 1 HETATM 5 C C5 OCT . . . H 6 5.526 -31.127 10.791 1 46.9 ? C5 OCT 406 A 1 HETATM 6 C C6 OCT . . . H 6 6.325 -30.848 9.529 1 48.69 ? C6 OCT 406 A 1 HETATM 7 C C7 OCT . . . H 6 5.497 -30.874 8.267 1 48.47 ? C7 OCT 406 A 1 HETATM 8 C C8 OCT . . . H 6 6.412 -30.591 7.087 1 48.41 ? C8 OCT 406 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #