data_1XJO # _model_server_result.job_id v6Qbg922HQs0ZBheTBooWw _model_server_result.datetime_utc '2025-06-20 07:56:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xjo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":905}' # _entry.id 1XJO # _exptl.entry_id 1XJO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XJO _cell.length_a 61.81 _cell.length_b 61.81 _cell.length_c 146.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJO _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 245 A CYS 245 1_555 A SG CYS 250 A CYS 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A C ASP 160 A ASP 160 1_555 A N MHO 161 A MHO 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale2 A C MHO 161 A MHO 161 1_555 A N ILE 162 A ILE 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? metalc ? metalc1 A OD1 ASP 3 A ASP 3 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc2 A O ILE 4 A ILE 4 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 A NE2 HIS 85 A HIS 85 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc4 A OD1 ASP 97 A ASP 97 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc5 A OD2 ASP 97 A ASP 97 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 A OE2 GLU 132 A GLU 132 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc7 A OE1 GLU 132 A GLU 132 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.672 ? metalc ? metalc8 A OD1 ASP 160 A ASP 160 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc9 A OD2 ASP 160 A ASP 160 1_555 B ZN ZN . A ZN 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.619 ? metalc ? metalc10 A NE2 HIS 247 A HIS 247 1_555 C ZN ZN . A ZN 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc11 A OD1 ASP 262 A ASP 262 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc12 A OD2 ASP 266 A ASP 266 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc13 A OD1 ASP 266 A ASP 266 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc14 F O HOH . A HOH 349 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc15 F O HOH . A HOH 519 1_555 E CA CA . A CA 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? metalc ? metalc16 B ZN ZN . A ZN 901 1_555 D O3 PO4 . A PO4 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc17 B ZN ZN . A ZN 901 1_555 D O4 PO4 . A PO4 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc18 C ZN ZN . A ZN 902 1_555 D O4 PO4 . A PO4 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1XJO _atom_sites.fract_transf_matrix[1][1] 0.016179 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 901 901 ZN ZN . C 2 ZN A 1 902 902 ZN ZN . D 3 PO4 A 1 903 903 PO4 PO4 . E 4 CA A 1 905 905 CA CA . F 5 HOH A 1 301 301 HOH HOH . F 5 HOH A 2 302 302 HOH HOH . F 5 HOH A 3 303 303 HOH HOH . F 5 HOH A 4 305 305 HOH HOH . F 5 HOH A 5 306 306 HOH HOH . F 5 HOH A 6 307 307 HOH HOH . F 5 HOH A 7 308 308 HOH HOH . F 5 HOH A 8 309 309 HOH HOH . F 5 HOH A 9 310 310 HOH HOH . F 5 HOH A 10 311 311 HOH HOH . F 5 HOH A 11 312 312 HOH HOH . F 5 HOH A 12 313 313 HOH HOH . F 5 HOH A 13 314 314 HOH HOH . F 5 HOH A 14 315 315 HOH HOH . F 5 HOH A 15 316 316 HOH HOH . F 5 HOH A 16 317 317 HOH HOH . F 5 HOH A 17 318 318 HOH HOH . F 5 HOH A 18 319 319 HOH HOH . F 5 HOH A 19 320 320 HOH HOH . F 5 HOH A 20 321 321 HOH HOH . F 5 HOH A 21 322 322 HOH HOH . F 5 HOH A 22 323 323 HOH HOH . F 5 HOH A 23 324 324 HOH HOH . F 5 HOH A 24 325 325 HOH HOH . F 5 HOH A 25 326 326 HOH HOH . F 5 HOH A 26 327 327 HOH HOH . F 5 HOH A 27 328 328 HOH HOH . F 5 HOH A 28 329 329 HOH HOH . F 5 HOH A 29 330 330 HOH HOH . F 5 HOH A 30 331 331 HOH HOH . F 5 HOH A 31 332 332 HOH HOH . F 5 HOH A 32 333 333 HOH HOH . F 5 HOH A 33 334 334 HOH HOH . F 5 HOH A 34 335 335 HOH HOH . F 5 HOH A 35 336 336 HOH HOH . F 5 HOH A 36 337 337 HOH HOH . F 5 HOH A 37 338 338 HOH HOH . F 5 HOH A 38 339 339 HOH HOH . F 5 HOH A 39 340 340 HOH HOH . F 5 HOH A 40 341 341 HOH HOH . F 5 HOH A 41 342 342 HOH HOH . F 5 HOH A 42 343 343 HOH HOH . F 5 HOH A 43 344 344 HOH HOH . F 5 HOH A 44 345 345 HOH HOH . F 5 HOH A 45 346 346 HOH HOH . F 5 HOH A 46 347 347 HOH HOH . F 5 HOH A 47 348 348 HOH HOH . F 5 HOH A 48 349 349 HOH HOH . F 5 HOH A 49 350 350 HOH HOH . F 5 HOH A 50 351 351 HOH HOH . F 5 HOH A 51 352 352 HOH HOH . F 5 HOH A 52 353 353 HOH HOH . F 5 HOH A 53 354 354 HOH HOH . F 5 HOH A 54 355 355 HOH HOH . F 5 HOH A 55 356 356 HOH HOH . F 5 HOH A 56 357 357 HOH HOH . F 5 HOH A 57 358 358 HOH HOH . F 5 HOH A 58 359 359 HOH HOH . F 5 HOH A 59 360 360 HOH HOH . F 5 HOH A 60 361 361 HOH HOH . F 5 HOH A 61 362 362 HOH HOH . F 5 HOH A 62 363 363 HOH HOH . F 5 HOH A 63 364 364 HOH HOH . F 5 HOH A 64 365 365 HOH HOH . F 5 HOH A 65 366 366 HOH HOH . F 5 HOH A 66 367 367 HOH HOH . F 5 HOH A 67 369 369 HOH HOH . F 5 HOH A 68 370 370 HOH HOH . F 5 HOH A 69 371 371 HOH HOH . F 5 HOH A 70 372 372 HOH HOH . F 5 HOH A 71 373 373 HOH HOH . F 5 HOH A 72 374 374 HOH HOH . F 5 HOH A 73 375 375 HOH HOH . F 5 HOH A 74 376 376 HOH HOH . F 5 HOH A 75 377 377 HOH HOH . F 5 HOH A 76 378 378 HOH HOH . F 5 HOH A 77 379 379 HOH HOH . F 5 HOH A 78 380 380 HOH HOH . F 5 HOH A 79 381 381 HOH HOH . F 5 HOH A 80 382 382 HOH HOH . F 5 HOH A 81 383 383 HOH HOH . F 5 HOH A 82 384 384 HOH HOH . F 5 HOH A 83 385 385 HOH HOH . F 5 HOH A 84 386 386 HOH HOH . F 5 HOH A 85 387 387 HOH HOH . F 5 HOH A 86 388 388 HOH HOH . F 5 HOH A 87 389 389 HOH HOH . F 5 HOH A 88 390 390 HOH HOH . F 5 HOH A 89 391 391 HOH HOH . F 5 HOH A 90 392 392 HOH HOH . F 5 HOH A 91 393 393 HOH HOH . F 5 HOH A 92 394 394 HOH HOH . F 5 HOH A 93 395 395 HOH HOH . F 5 HOH A 94 396 396 HOH HOH . F 5 HOH A 95 397 397 HOH HOH . F 5 HOH A 96 399 399 HOH HOH . F 5 HOH A 97 400 400 HOH HOH . F 5 HOH A 98 401 401 HOH HOH . F 5 HOH A 99 402 402 HOH HOH . F 5 HOH A 100 403 403 HOH HOH . F 5 HOH A 101 404 404 HOH HOH . F 5 HOH A 102 405 405 HOH HOH . F 5 HOH A 103 406 406 HOH HOH . F 5 HOH A 104 407 407 HOH HOH . F 5 HOH A 105 408 408 HOH HOH . F 5 HOH A 106 409 409 HOH HOH . F 5 HOH A 107 410 410 HOH HOH . F 5 HOH A 108 411 411 HOH HOH . F 5 HOH A 109 412 412 HOH HOH . F 5 HOH A 110 413 413 HOH HOH . F 5 HOH A 111 414 414 HOH HOH . F 5 HOH A 112 415 415 HOH HOH . F 5 HOH A 113 416 416 HOH HOH . F 5 HOH A 114 417 417 HOH HOH . F 5 HOH A 115 418 418 HOH HOH . F 5 HOH A 116 419 419 HOH HOH . F 5 HOH A 117 421 421 HOH HOH . F 5 HOH A 118 422 422 HOH HOH . F 5 HOH A 119 423 423 HOH HOH . F 5 HOH A 120 425 425 HOH HOH . F 5 HOH A 121 426 426 HOH HOH . F 5 HOH A 122 427 427 HOH HOH . F 5 HOH A 123 428 428 HOH HOH . F 5 HOH A 124 429 429 HOH HOH . F 5 HOH A 125 430 430 HOH HOH . F 5 HOH A 126 431 431 HOH HOH . F 5 HOH A 127 432 432 HOH HOH . F 5 HOH A 128 433 433 HOH HOH . F 5 HOH A 129 434 434 HOH HOH . F 5 HOH A 130 435 435 HOH HOH . F 5 HOH A 131 436 436 HOH HOH . F 5 HOH A 132 437 437 HOH HOH . F 5 HOH A 133 438 438 HOH HOH . F 5 HOH A 134 439 439 HOH HOH . F 5 HOH A 135 440 440 HOH HOH . F 5 HOH A 136 442 442 HOH HOH . F 5 HOH A 137 445 445 HOH HOH . F 5 HOH A 138 446 446 HOH HOH . F 5 HOH A 139 447 447 HOH HOH . F 5 HOH A 140 449 449 HOH HOH . F 5 HOH A 141 450 450 HOH HOH . F 5 HOH A 142 451 451 HOH HOH . F 5 HOH A 143 452 452 HOH HOH . F 5 HOH A 144 453 453 HOH HOH . F 5 HOH A 145 456 456 HOH HOH . F 5 HOH A 146 457 457 HOH HOH . F 5 HOH A 147 458 458 HOH HOH . F 5 HOH A 148 459 459 HOH HOH . F 5 HOH A 149 460 460 HOH HOH . F 5 HOH A 150 462 462 HOH HOH . F 5 HOH A 151 463 463 HOH HOH . F 5 HOH A 152 465 465 HOH HOH . F 5 HOH A 153 466 466 HOH HOH . F 5 HOH A 154 467 467 HOH HOH . F 5 HOH A 155 468 468 HOH HOH . F 5 HOH A 156 469 469 HOH HOH . F 5 HOH A 157 470 470 HOH HOH . F 5 HOH A 158 471 471 HOH HOH . F 5 HOH A 159 472 472 HOH HOH . F 5 HOH A 160 473 473 HOH HOH . F 5 HOH A 161 474 474 HOH HOH . F 5 HOH A 162 475 475 HOH HOH . F 5 HOH A 163 476 476 HOH HOH . F 5 HOH A 164 477 477 HOH HOH . F 5 HOH A 165 479 479 HOH HOH . F 5 HOH A 166 481 481 HOH HOH . F 5 HOH A 167 482 482 HOH HOH . F 5 HOH A 168 484 484 HOH HOH . F 5 HOH A 169 485 485 HOH HOH . F 5 HOH A 170 486 486 HOH HOH . F 5 HOH A 171 487 487 HOH HOH . F 5 HOH A 172 488 488 HOH HOH . F 5 HOH A 173 490 490 HOH HOH . F 5 HOH A 174 491 491 HOH HOH . F 5 HOH A 175 492 492 HOH HOH . F 5 HOH A 176 493 493 HOH HOH . F 5 HOH A 177 494 494 HOH HOH . F 5 HOH A 178 495 495 HOH HOH . F 5 HOH A 179 496 496 HOH HOH . F 5 HOH A 180 497 497 HOH HOH . F 5 HOH A 181 498 498 HOH HOH . F 5 HOH A 182 500 500 HOH HOH . F 5 HOH A 183 502 502 HOH HOH . F 5 HOH A 184 503 503 HOH HOH . F 5 HOH A 185 504 504 HOH HOH . F 5 HOH A 186 508 508 HOH HOH . F 5 HOH A 187 509 509 HOH HOH . F 5 HOH A 188 511 511 HOH HOH . F 5 HOH A 189 512 512 HOH HOH . F 5 HOH A 190 513 513 HOH HOH . F 5 HOH A 191 514 514 HOH HOH . F 5 HOH A 192 515 515 HOH HOH . F 5 HOH A 193 516 516 HOH HOH . F 5 HOH A 194 518 518 HOH HOH . F 5 HOH A 195 519 519 HOH HOH . F 5 HOH A 196 520 520 HOH HOH . F 5 HOH A 197 521 521 HOH HOH . F 5 HOH A 198 522 522 HOH HOH . F 5 HOH A 199 523 523 HOH HOH . F 5 HOH A 200 524 524 HOH HOH . F 5 HOH A 201 525 525 HOH HOH . F 5 HOH A 202 527 527 HOH HOH . F 5 HOH A 203 528 528 HOH HOH . F 5 HOH A 204 529 529 HOH HOH . F 5 HOH A 205 530 530 HOH HOH . F 5 HOH A 206 531 531 HOH HOH . F 5 HOH A 207 532 532 HOH HOH . F 5 HOH A 208 533 533 HOH HOH . F 5 HOH A 209 534 534 HOH HOH . F 5 HOH A 210 535 535 HOH HOH . F 5 HOH A 211 536 536 HOH HOH . F 5 HOH A 212 537 537 HOH HOH . F 5 HOH A 213 538 538 HOH HOH . F 5 HOH A 214 540 540 HOH HOH . F 5 HOH A 215 541 541 HOH HOH . F 5 HOH A 216 542 542 HOH HOH . F 5 HOH A 217 543 543 HOH HOH . F 5 HOH A 218 545 545 HOH HOH . F 5 HOH A 219 546 546 HOH HOH . F 5 HOH A 220 547 547 HOH HOH . F 5 HOH A 221 548 548 HOH HOH . F 5 HOH A 222 549 549 HOH HOH . F 5 HOH A 223 550 550 HOH HOH . F 5 HOH A 224 551 551 HOH HOH . F 5 HOH A 225 553 553 HOH HOH . F 5 HOH A 226 554 554 HOH HOH . F 5 HOH A 227 555 555 HOH HOH . F 5 HOH A 228 556 556 HOH HOH . F 5 HOH A 229 557 557 HOH HOH . F 5 HOH A 230 558 558 HOH HOH . F 5 HOH A 231 559 559 HOH HOH . F 5 HOH A 232 560 560 HOH HOH . F 5 HOH A 233 561 561 HOH HOH . F 5 HOH A 234 562 562 HOH HOH . F 5 HOH A 235 564 564 HOH HOH . F 5 HOH A 236 565 565 HOH HOH . F 5 HOH A 237 566 566 HOH HOH . F 5 HOH A 238 568 568 HOH HOH . F 5 HOH A 239 569 569 HOH HOH . F 5 HOH A 240 570 570 HOH HOH . F 5 HOH A 241 571 571 HOH HOH . F 5 HOH A 242 572 572 HOH HOH . F 5 HOH A 243 573 573 HOH HOH . F 5 HOH A 244 574 574 HOH HOH . F 5 HOH A 245 575 575 HOH HOH . F 5 HOH A 246 576 576 HOH HOH . F 5 HOH A 247 577 577 HOH HOH . F 5 HOH A 248 578 578 HOH HOH . F 5 HOH A 249 579 579 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 22.629 _atom_site.Cartn_y 13.3 _atom_site.Cartn_z 28.656 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 14.48 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 905 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #