data_1XJT # _model_server_result.job_id UXddYgTRyX1rIV2TLXwhLA _model_server_result.datetime_utc '2024-10-10 23:32:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xjt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":250}' # _entry.id 1XJT # _exptl.entry_id 1XJT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1XJT _cell.length_a 66.871 _cell.length_b 66.871 _cell.length_c 166.796 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XJT _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 13 A CYS 13 1_555 A SG CYS 44 A CYS 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 91 A CYS 91 1_555 A SG CYS 118 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 150 A CYS 150 1_555 A SG CYS 178 A CYS 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? covale ? covale1 A C VAL 17 A VAL 17 1_555 A N MSE 18 A MSE 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C MSE 18 A MSE 18 1_555 A N ILE 19 A ILE 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale3 A C VAL 22 A VAL 22 1_555 A N MSE 23 A MSE 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 23 A MSE 23 1_555 A N GLY 24 A GLY 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C TYR 49 A TYR 49 1_555 A N MSE 50 A MSE 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale6 A C MSE 50 A MSE 50 1_555 A N CYS 51 A CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 A C ASP 100 A ASP 100 1_555 A N MSE 101 A MSE 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale8 A C MSE 101 A MSE 101 1_555 A N PRO 102 A PRO 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale9 A C ALA 108 A ALA 108 1_555 A N MSE 109 A MSE 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale10 A C MSE 109 A MSE 109 1_555 A N THR 110 A THR 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale11 A C ASN 115 A ASN 115 1_555 A N MSE 116 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 116 A MSE 116 1_555 A N GLY 117 A GLY 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C GLY 130 A GLY 130 1_555 A N MSE 131 A MSE 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale14 A C MSE 131 A MSE 131 1_555 A N ARG 132 A ARG 132 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 A C ASN 148 A ASN 148 1_555 A N MSE 149 A MSE 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 A C MSE 149 A MSE 149 1_555 A N CYS 150 A CYS 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 1XJT _atom_sites.fract_transf_matrix[1][1] 0.015 _atom_sites.fract_transf_matrix[1][2] 0.0086 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 192 150 CIT CIT . C 2 CIT A 1 250 250 CIT CIT . D 3 HOH A 1 251 1 HOH HOH . D 3 HOH A 2 252 2 HOH HOH . D 3 HOH A 3 253 3 HOH HOH . D 3 HOH A 4 254 4 HOH HOH . D 3 HOH A 5 255 5 HOH HOH . D 3 HOH A 6 256 6 HOH HOH . D 3 HOH A 7 257 7 HOH HOH . D 3 HOH A 8 258 8 HOH HOH . D 3 HOH A 9 259 9 HOH HOH . D 3 HOH A 10 260 10 HOH HOH . D 3 HOH A 11 261 11 HOH HOH . D 3 HOH A 12 262 12 HOH HOH . D 3 HOH A 13 263 13 HOH HOH . D 3 HOH A 14 264 14 HOH HOH . D 3 HOH A 15 265 15 HOH HOH . D 3 HOH A 16 266 16 HOH HOH . D 3 HOH A 17 267 17 HOH HOH . D 3 HOH A 18 268 18 HOH HOH . D 3 HOH A 19 269 19 HOH HOH . D 3 HOH A 20 270 20 HOH HOH . D 3 HOH A 21 271 21 HOH HOH . D 3 HOH A 22 272 22 HOH HOH . D 3 HOH A 23 273 23 HOH HOH . D 3 HOH A 24 274 24 HOH HOH . D 3 HOH A 25 275 25 HOH HOH . D 3 HOH A 26 276 26 HOH HOH . D 3 HOH A 27 277 27 HOH HOH . D 3 HOH A 28 278 28 HOH HOH . D 3 HOH A 29 279 29 HOH HOH . D 3 HOH A 30 280 30 HOH HOH . D 3 HOH A 31 281 31 HOH HOH . D 3 HOH A 32 282 32 HOH HOH . D 3 HOH A 33 283 33 HOH HOH . D 3 HOH A 34 284 34 HOH HOH . D 3 HOH A 35 285 35 HOH HOH . D 3 HOH A 36 286 36 HOH HOH . D 3 HOH A 37 287 37 HOH HOH . D 3 HOH A 38 288 38 HOH HOH . D 3 HOH A 39 289 39 HOH HOH . D 3 HOH A 40 290 40 HOH HOH . D 3 HOH A 41 291 41 HOH HOH . D 3 HOH A 42 292 42 HOH HOH . D 3 HOH A 43 293 43 HOH HOH . D 3 HOH A 44 294 44 HOH HOH . D 3 HOH A 45 295 45 HOH HOH . D 3 HOH A 46 296 46 HOH HOH . D 3 HOH A 47 297 47 HOH HOH . D 3 HOH A 48 298 48 HOH HOH . D 3 HOH A 49 299 49 HOH HOH . D 3 HOH A 50 300 50 HOH HOH . D 3 HOH A 51 301 51 HOH HOH . D 3 HOH A 52 302 52 HOH HOH . D 3 HOH A 53 303 53 HOH HOH . D 3 HOH A 54 304 54 HOH HOH . D 3 HOH A 55 305 55 HOH HOH . D 3 HOH A 56 306 56 HOH HOH . D 3 HOH A 57 307 57 HOH HOH . D 3 HOH A 58 308 58 HOH HOH . D 3 HOH A 59 309 59 HOH HOH . D 3 HOH A 60 310 60 HOH HOH . D 3 HOH A 61 311 61 HOH HOH . D 3 HOH A 62 312 62 HOH HOH . D 3 HOH A 63 313 63 HOH HOH . D 3 HOH A 64 314 64 HOH HOH . D 3 HOH A 65 315 65 HOH HOH . D 3 HOH A 66 316 66 HOH HOH . D 3 HOH A 67 317 67 HOH HOH . D 3 HOH A 68 318 68 HOH HOH . D 3 HOH A 69 319 69 HOH HOH . D 3 HOH A 70 320 70 HOH HOH . D 3 HOH A 71 321 71 HOH HOH . D 3 HOH A 72 322 72 HOH HOH . D 3 HOH A 73 323 73 HOH HOH . D 3 HOH A 74 324 74 HOH HOH . D 3 HOH A 75 325 75 HOH HOH . D 3 HOH A 76 326 76 HOH HOH . D 3 HOH A 77 327 77 HOH HOH . D 3 HOH A 78 328 78 HOH HOH . D 3 HOH A 79 329 79 HOH HOH . D 3 HOH A 80 330 80 HOH HOH . D 3 HOH A 81 331 81 HOH HOH . D 3 HOH A 82 332 82 HOH HOH . D 3 HOH A 83 333 83 HOH HOH . D 3 HOH A 84 334 84 HOH HOH . D 3 HOH A 85 335 85 HOH HOH . D 3 HOH A 86 336 86 HOH HOH . D 3 HOH A 87 337 87 HOH HOH . D 3 HOH A 88 338 88 HOH HOH . D 3 HOH A 89 339 89 HOH HOH . D 3 HOH A 90 340 90 HOH HOH . D 3 HOH A 91 341 91 HOH HOH . D 3 HOH A 92 342 92 HOH HOH . D 3 HOH A 93 343 93 HOH HOH . D 3 HOH A 94 344 94 HOH HOH . D 3 HOH A 95 345 95 HOH HOH . D 3 HOH A 96 346 96 HOH HOH . D 3 HOH A 97 347 97 HOH HOH . D 3 HOH A 98 348 98 HOH HOH . D 3 HOH A 99 349 99 HOH HOH . D 3 HOH A 100 350 100 HOH HOH . D 3 HOH A 101 351 101 HOH HOH . D 3 HOH A 102 352 102 HOH HOH . D 3 HOH A 103 353 103 HOH HOH . D 3 HOH A 104 354 104 HOH HOH . D 3 HOH A 105 355 105 HOH HOH . D 3 HOH A 106 356 106 HOH HOH . D 3 HOH A 107 357 107 HOH HOH . D 3 HOH A 108 358 108 HOH HOH . D 3 HOH A 109 359 109 HOH HOH . D 3 HOH A 110 360 110 HOH HOH . D 3 HOH A 111 361 111 HOH HOH . D 3 HOH A 112 362 112 HOH HOH . D 3 HOH A 113 363 113 HOH HOH . D 3 HOH A 114 364 114 HOH HOH . D 3 HOH A 115 365 115 HOH HOH . D 3 HOH A 116 366 116 HOH HOH . D 3 HOH A 117 367 117 HOH HOH . D 3 HOH A 118 368 118 HOH HOH . D 3 HOH A 119 369 119 HOH HOH . D 3 HOH A 120 370 120 HOH HOH . D 3 HOH A 121 371 121 HOH HOH . D 3 HOH A 122 372 122 HOH HOH . D 3 HOH A 123 373 123 HOH HOH . D 3 HOH A 124 374 124 HOH HOH . D 3 HOH A 125 375 125 HOH HOH . D 3 HOH A 126 376 126 HOH HOH . D 3 HOH A 127 377 127 HOH HOH . D 3 HOH A 128 378 128 HOH HOH . D 3 HOH A 129 379 129 HOH HOH . D 3 HOH A 130 380 130 HOH HOH . D 3 HOH A 131 381 131 HOH HOH . D 3 HOH A 132 382 132 HOH HOH . D 3 HOH A 133 383 133 HOH HOH . D 3 HOH A 134 384 134 HOH HOH . D 3 HOH A 135 385 135 HOH HOH . D 3 HOH A 136 386 136 HOH HOH . D 3 HOH A 137 387 137 HOH HOH . D 3 HOH A 138 388 138 HOH HOH . D 3 HOH A 139 389 139 HOH HOH . D 3 HOH A 140 390 140 HOH HOH . D 3 HOH A 141 391 141 HOH HOH . D 3 HOH A 142 392 142 HOH HOH . D 3 HOH A 143 393 143 HOH HOH . D 3 HOH A 144 394 144 HOH HOH . D 3 HOH A 145 395 145 HOH HOH . D 3 HOH A 146 396 146 HOH HOH . D 3 HOH A 147 397 147 HOH HOH . D 3 HOH A 148 398 148 HOH HOH . D 3 HOH A 149 399 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 2 0.525 25.399 18.492 1 66.72 ? C1 CIT 250 A 1 HETATM 2 O O1 CIT . . . C 2 0.905 24.211 18.676 1 68.36 ? O1 CIT 250 A 1 HETATM 3 O O2 CIT . . . C 2 1.36 26.319 18.311 1 66.9 ? O2 CIT 250 A 1 HETATM 4 C C2 CIT . . . C 2 -0.942 25.753 18.477 1 65.89 ? C2 CIT 250 A 1 HETATM 5 C C3 CIT . . . C 2 -1.428 25.679 17.031 1 64.75 ? C3 CIT 250 A 1 HETATM 6 O O7 CIT . . . C 2 -0.363 26.117 16.15 1 67.14 ? O7 CIT 250 A 1 HETATM 7 C C4 CIT . . . C 2 -1.683 24.176 16.875 1 61.92 ? C4 CIT 250 A 1 HETATM 8 C C5 CIT . . . C 2 -2.031 23.653 15.509 1 58.01 ? C5 CIT 250 A 1 HETATM 9 O O3 CIT . . . C 2 -1.651 22.511 15.212 1 58.38 ? O3 CIT 250 A 1 HETATM 10 O O4 CIT . . . C 2 -2.671 24.302 14.677 1 60.64 ? O4 CIT 250 A 1 HETATM 11 C C6 CIT . . . C 2 -2.561 26.698 16.876 1 66.05 ? C6 CIT 250 A 1 HETATM 12 O O5 CIT . . . C 2 -2.811 27.287 15.79 1 64.36 ? O5 CIT 250 A 1 HETATM 13 O O6 CIT . . . C 2 -3.223 27.013 17.896 1 67.91 ? O6 CIT 250 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #