data_1XJW
#
_model_server_result.job_id            H3Dbgn4Jti2nUvQhfddT0g 
_model_server_result.datetime_utc      '2024-10-11 02:27:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1xjw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1311}' 
#
_entry.id    1XJW 
#
_exptl.entry_id    1XJW 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              255.119 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'N-(PHOSPHONACETYL)-L-ASPARTIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1XJW 
_cell.length_a            122.116 
_cell.length_b            122.116 
_cell.length_c            155.928 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1XJW 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        150 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 3 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dodecameric 
_pdbx_struct_assembly.oligomeric_count      12 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 122.116 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 61.058 105.755558 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 109 B CYS 109 1_555 F ZN ZN . B ZN 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc2 B SG CYS 114 B CYS 114 1_555 F ZN ZN . B ZN 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc3 B SG CYS 138 B CYS 138 1_555 F ZN ZN . B ZN 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc4 B SG CYS 141 B CYS 141 1_555 F ZN ZN . B ZN 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? 
metalc ? metalc5 D SG CYS 109 D CYS 109 1_555 H ZN ZN . D ZN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc6 D SG CYS 114 D CYS 114 1_555 H ZN ZN . D ZN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc7 D SG CYS 138 D CYS 138 1_555 H ZN ZN . D ZN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc8 D SG CYS 141 D CYS 141 1_555 H ZN ZN . D ZN 1314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
#
_chem_comp.formula           'C6 H10 N O8 P' 
_chem_comp.formula_weight    255.119 
_chem_comp.id                PAL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'N-(PHOSPHONACETYL)-L-ASPARTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P PAL doub 237 n n 
P O2P PAL sing 238 n n 
P O3P PAL sing 239 n n 
P C1P PAL sing 240 n n 
O2P HOP2 PAL sing 241 n n 
O3P HOP3 PAL sing 242 n n 
C1P C1 PAL sing 243 n n 
C1P H1P1 PAL sing 244 n n 
C1P H1P2 PAL sing 245 n n 
C1 O1 PAL doub 246 n n 
C1 N2 PAL sing 247 n n 
N2 C2 PAL sing 248 n n 
N2 HN2 PAL sing 249 n n 
C2 C4 PAL sing 250 n n 
C2 C3 PAL sing 251 n n 
C2 H2 PAL sing 252 n n 
C4 O2 PAL doub 253 n n 
C4 O3 PAL sing 254 n n 
O3 HO3 PAL sing 255 n n 
C3 C5 PAL sing 256 n n 
C3 H31 PAL sing 257 n n 
C3 H32 PAL sing 258 n n 
C5 O4 PAL doub 259 n n 
C5 O5 PAL sing 260 n n 
O5 HO5 PAL sing 261 n n 
#
_atom_sites.entry_id                     1XJW 
_atom_sites.fract_transf_matrix[1][1]    0.008189 
_atom_sites.fract_transf_matrix[1][2]    0.004728 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009456 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006413 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PAL A 1 1311 1311 PAL PAL . 
F 4 ZN B 1 1313 1313 ZN ZN . 
G 3 PAL C 1 1312 1312 PAL PAL . 
H 4 ZN D 1 1314 1314 ZN ZN . 
I 5 HOH A 1 500 500 HOH HOH . 
I 5 HOH A 2 501 501 HOH HOH . 
I 5 HOH A 3 503 503 HOH HOH . 
I 5 HOH A 4 508 508 HOH HOH . 
I 5 HOH A 5 513 513 HOH HOH . 
I 5 HOH A 6 515 515 HOH HOH . 
I 5 HOH A 7 517 517 HOH HOH . 
I 5 HOH A 8 521 521 HOH HOH . 
I 5 HOH A 9 527 527 HOH HOH . 
I 5 HOH A 10 531 531 HOH HOH . 
I 5 HOH A 11 532 532 HOH HOH . 
I 5 HOH A 12 533 533 HOH HOH . 
I 5 HOH A 13 534 534 HOH HOH . 
I 5 HOH A 14 535 535 HOH HOH . 
I 5 HOH A 15 536 536 HOH HOH . 
I 5 HOH A 16 538 538 HOH HOH . 
I 5 HOH A 17 545 545 HOH HOH . 
I 5 HOH A 18 548 548 HOH HOH . 
I 5 HOH A 19 549 549 HOH HOH . 
I 5 HOH A 20 551 551 HOH HOH . 
I 5 HOH A 21 553 553 HOH HOH . 
I 5 HOH A 22 554 554 HOH HOH . 
I 5 HOH A 23 555 555 HOH HOH . 
I 5 HOH A 24 556 556 HOH HOH . 
I 5 HOH A 25 564 564 HOH HOH . 
I 5 HOH A 26 566 566 HOH HOH . 
I 5 HOH A 27 567 567 HOH HOH . 
I 5 HOH A 28 569 569 HOH HOH . 
I 5 HOH A 29 574 574 HOH HOH . 
I 5 HOH A 30 581 581 HOH HOH . 
I 5 HOH A 31 582 582 HOH HOH . 
I 5 HOH A 32 584 584 HOH HOH . 
I 5 HOH A 33 585 585 HOH HOH . 
I 5 HOH A 34 588 588 HOH HOH . 
I 5 HOH A 35 589 589 HOH HOH . 
I 5 HOH A 36 590 590 HOH HOH . 
I 5 HOH A 37 596 596 HOH HOH . 
I 5 HOH A 38 598 598 HOH HOH . 
I 5 HOH A 39 602 602 HOH HOH . 
I 5 HOH A 40 604 604 HOH HOH . 
I 5 HOH A 41 606 606 HOH HOH . 
I 5 HOH A 42 607 607 HOH HOH . 
I 5 HOH A 43 609 609 HOH HOH . 
I 5 HOH A 44 610 610 HOH HOH . 
I 5 HOH A 45 613 613 HOH HOH . 
I 5 HOH A 46 614 614 HOH HOH . 
I 5 HOH A 47 615 615 HOH HOH . 
J 5 HOH B 1 523 523 HOH HOH . 
J 5 HOH B 2 547 547 HOH HOH . 
J 5 HOH B 3 575 575 HOH HOH . 
J 5 HOH B 4 583 583 HOH HOH . 
J 5 HOH B 5 595 595 HOH HOH . 
J 5 HOH B 6 600 600 HOH HOH . 
J 5 HOH B 7 601 601 HOH HOH . 
J 5 HOH B 8 603 603 HOH HOH . 
K 5 HOH C 1 502 502 HOH HOH . 
K 5 HOH C 2 504 504 HOH HOH . 
K 5 HOH C 3 505 505 HOH HOH . 
K 5 HOH C 4 506 506 HOH HOH . 
K 5 HOH C 5 507 507 HOH HOH . 
K 5 HOH C 6 509 509 HOH HOH . 
K 5 HOH C 7 510 510 HOH HOH . 
K 5 HOH C 8 511 511 HOH HOH . 
K 5 HOH C 9 512 512 HOH HOH . 
K 5 HOH C 10 514 514 HOH HOH . 
K 5 HOH C 11 516 516 HOH HOH . 
K 5 HOH C 12 518 518 HOH HOH . 
K 5 HOH C 13 519 519 HOH HOH . 
K 5 HOH C 14 520 520 HOH HOH . 
K 5 HOH C 15 522 522 HOH HOH . 
K 5 HOH C 16 525 525 HOH HOH . 
K 5 HOH C 17 526 526 HOH HOH . 
K 5 HOH C 18 528 528 HOH HOH . 
K 5 HOH C 19 529 529 HOH HOH . 
K 5 HOH C 20 530 530 HOH HOH . 
K 5 HOH C 21 537 537 HOH HOH . 
K 5 HOH C 22 539 539 HOH HOH . 
K 5 HOH C 23 541 541 HOH HOH . 
K 5 HOH C 24 542 542 HOH HOH . 
K 5 HOH C 25 543 543 HOH HOH . 
K 5 HOH C 26 544 544 HOH HOH . 
K 5 HOH C 27 546 546 HOH HOH . 
K 5 HOH C 28 550 550 HOH HOH . 
K 5 HOH C 29 552 552 HOH HOH . 
K 5 HOH C 30 557 557 HOH HOH . 
K 5 HOH C 31 558 558 HOH HOH . 
K 5 HOH C 32 559 559 HOH HOH . 
K 5 HOH C 33 561 561 HOH HOH . 
K 5 HOH C 34 562 562 HOH HOH . 
K 5 HOH C 35 563 563 HOH HOH . 
K 5 HOH C 36 565 565 HOH HOH . 
K 5 HOH C 37 568 568 HOH HOH . 
K 5 HOH C 38 570 570 HOH HOH . 
K 5 HOH C 39 571 571 HOH HOH . 
K 5 HOH C 40 572 572 HOH HOH . 
K 5 HOH C 41 573 573 HOH HOH . 
K 5 HOH C 42 576 576 HOH HOH . 
K 5 HOH C 43 577 577 HOH HOH . 
K 5 HOH C 44 578 578 HOH HOH . 
K 5 HOH C 45 579 579 HOH HOH . 
K 5 HOH C 46 580 580 HOH HOH . 
K 5 HOH C 47 587 587 HOH HOH . 
K 5 HOH C 48 591 591 HOH HOH . 
K 5 HOH C 49 594 594 HOH HOH . 
K 5 HOH C 50 597 597 HOH HOH . 
K 5 HOH C 51 599 599 HOH HOH . 
K 5 HOH C 52 605 605 HOH HOH . 
K 5 HOH C 53 608 608 HOH HOH . 
K 5 HOH C 54 611 611 HOH HOH . 
K 5 HOH C 55 612 612 HOH HOH . 
L 5 HOH D 1 524 524 HOH HOH . 
L 5 HOH D 2 540 540 HOH HOH . 
L 5 HOH D 3 560 560 HOH HOH . 
L 5 HOH D 4 586 586 HOH HOH . 
L 5 HOH D 5 592 592 HOH HOH . 
L 5 HOH D 6 593 593 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PAL . . . E 3 45.766 29.677 15.934 0.99 20.71 ? P PAL 1311 A 1 
HETATM 2 O O1P PAL . . . E 3 46.165 30.249 17.353 0.99 17.83 ? O1P PAL 1311 A 1 
HETATM 3 O O2P PAL . . . E 3 46.723 28.481 15.617 0.99 16.99 ? O2P PAL 1311 A 1 
HETATM 4 O O3P PAL . . . E 3 46.198 30.839 14.946 0.99 21.24 ? O3P PAL 1311 A 1 
HETATM 5 C C1P PAL . . . E 3 43.975 29.026 15.788 0.99 19.13 ? C1P PAL 1311 A 1 
HETATM 6 C C1 PAL . . . E 3 43.063 30.117 16.283 0.99 22.88 ? C1 PAL 1311 A 1 
HETATM 7 O O1 PAL . . . E 3 42.979 31.161 15.621 0.99 23.23 ? O1 PAL 1311 A 1 
HETATM 8 N N2 PAL . . . E 3 42.399 29.909 17.426 0.99 24.31 ? N2 PAL 1311 A 1 
HETATM 9 C C2 PAL . . . E 3 41.552 30.943 18.021 0.99 28.1 ? C2 PAL 1311 A 1 
HETATM 10 C C4 PAL . . . E 3 42.539 32.005 18.494 0.99 32.15 ? C4 PAL 1311 A 1 
HETATM 11 O O2 PAL . . . E 3 42.125 32.901 19.261 0.99 37.62 ? O2 PAL 1311 A 1 
HETATM 12 O O3 PAL . . . E 3 43.725 31.916 18.085 0.99 35.18 ? O3 PAL 1311 A 1 
HETATM 13 C C3 PAL . . . E 3 40.82 30.368 19.237 0.99 30.01 ? C3 PAL 1311 A 1 
HETATM 14 C C5 PAL . . . E 3 41.693 29.398 20.057 0.99 30.09 ? C5 PAL 1311 A 1 
HETATM 15 O O4 PAL . . . E 3 42.905 29.693 20.248 0.99 31.45 ? O4 PAL 1311 A 1 
HETATM 16 O O5 PAL . . . E 3 41.156 28.358 20.521 0.99 26.15 ? O5 PAL 1311 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#