data_1XK1 # _model_server_result.job_id 1-QFV07Q33FtTehWeVZiOQ _model_server_result.datetime_utc '2024-11-26 18:17:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1xk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":300}' # _entry.id 1XK1 # _exptl.entry_id 1XK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1XK1 _cell.length_a 54.103 _cell.length_b 75.212 _cell.length_c 107.38 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1XK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 A NE2 HIS 143 A HIS 143 1_555 C FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.921 ? metalc ? metalc3 B NE2 HIS 25 B HIS 25 1_555 D FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc4 B NE2 HIS 143 B HIS 143 1_555 D FE HEM . B HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 1XK1 _atom_sites.fract_transf_matrix[1][1] 0.018483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009313 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 300 300 HEM HEM . D 2 HEM B 1 300 300 HEM HEM . E 3 HOH A 1 301 2 HOH HOH . E 3 HOH A 2 302 3 HOH HOH . E 3 HOH A 3 303 4 HOH HOH . E 3 HOH A 4 304 5 HOH HOH . E 3 HOH A 5 305 6 HOH HOH . E 3 HOH A 6 306 9 HOH HOH . E 3 HOH A 7 307 10 HOH HOH . E 3 HOH A 8 308 11 HOH HOH . E 3 HOH A 9 309 13 HOH HOH . E 3 HOH A 10 310 17 HOH HOH . E 3 HOH A 11 311 18 HOH HOH . E 3 HOH A 12 312 21 HOH HOH . E 3 HOH A 13 313 23 HOH HOH . E 3 HOH A 14 314 25 HOH HOH . E 3 HOH A 15 315 26 HOH HOH . E 3 HOH A 16 316 32 HOH HOH . E 3 HOH A 17 317 33 HOH HOH . E 3 HOH A 18 318 37 HOH HOH . E 3 HOH A 19 319 38 HOH HOH . E 3 HOH A 20 320 40 HOH HOH . E 3 HOH A 21 321 41 HOH HOH . E 3 HOH A 22 322 44 HOH HOH . E 3 HOH A 23 323 46 HOH HOH . E 3 HOH A 24 324 49 HOH HOH . E 3 HOH A 25 325 50 HOH HOH . E 3 HOH A 26 326 52 HOH HOH . E 3 HOH A 27 327 53 HOH HOH . E 3 HOH A 28 328 54 HOH HOH . E 3 HOH A 29 329 55 HOH HOH . E 3 HOH A 30 330 57 HOH HOH . E 3 HOH A 31 331 59 HOH HOH . E 3 HOH A 32 332 62 HOH HOH . E 3 HOH A 33 333 63 HOH HOH . E 3 HOH A 34 334 64 HOH HOH . E 3 HOH A 35 335 65 HOH HOH . E 3 HOH A 36 336 68 HOH HOH . E 3 HOH A 37 337 69 HOH HOH . E 3 HOH A 38 338 70 HOH HOH . E 3 HOH A 39 339 72 HOH HOH . E 3 HOH A 40 340 73 HOH HOH . E 3 HOH A 41 341 74 HOH HOH . E 3 HOH A 42 342 76 HOH HOH . E 3 HOH A 43 343 77 HOH HOH . E 3 HOH A 44 344 78 HOH HOH . E 3 HOH A 45 345 79 HOH HOH . E 3 HOH A 46 346 80 HOH HOH . E 3 HOH A 47 347 81 HOH HOH . E 3 HOH A 48 348 83 HOH HOH . E 3 HOH A 49 349 86 HOH HOH . E 3 HOH A 50 350 87 HOH HOH . E 3 HOH A 51 351 88 HOH HOH . E 3 HOH A 52 352 89 HOH HOH . E 3 HOH A 53 353 92 HOH HOH . E 3 HOH A 54 354 93 HOH HOH . E 3 HOH A 55 355 94 HOH HOH . E 3 HOH A 56 356 97 HOH HOH . E 3 HOH A 57 357 98 HOH HOH . E 3 HOH A 58 358 100 HOH HOH . E 3 HOH A 59 359 104 HOH HOH . E 3 HOH A 60 360 105 HOH HOH . E 3 HOH A 61 361 106 HOH HOH . E 3 HOH A 62 362 107 HOH HOH . E 3 HOH A 63 363 108 HOH HOH . E 3 HOH A 64 364 109 HOH HOH . E 3 HOH A 65 365 110 HOH HOH . E 3 HOH A 66 366 111 HOH HOH . F 3 HOH B 1 301 1 HOH HOH . F 3 HOH B 2 302 7 HOH HOH . F 3 HOH B 3 303 8 HOH HOH . F 3 HOH B 4 304 12 HOH HOH . F 3 HOH B 5 305 14 HOH HOH . F 3 HOH B 6 306 15 HOH HOH . F 3 HOH B 7 307 16 HOH HOH . F 3 HOH B 8 308 19 HOH HOH . F 3 HOH B 9 309 20 HOH HOH . F 3 HOH B 10 310 22 HOH HOH . F 3 HOH B 11 311 24 HOH HOH . F 3 HOH B 12 312 27 HOH HOH . F 3 HOH B 13 313 28 HOH HOH . F 3 HOH B 14 314 29 HOH HOH . F 3 HOH B 15 315 30 HOH HOH . F 3 HOH B 16 316 31 HOH HOH . F 3 HOH B 17 317 34 HOH HOH . F 3 HOH B 18 318 35 HOH HOH . F 3 HOH B 19 319 36 HOH HOH . F 3 HOH B 20 320 39 HOH HOH . F 3 HOH B 21 321 42 HOH HOH . F 3 HOH B 22 322 43 HOH HOH . F 3 HOH B 23 323 45 HOH HOH . F 3 HOH B 24 324 47 HOH HOH . F 3 HOH B 25 325 48 HOH HOH . F 3 HOH B 26 326 51 HOH HOH . F 3 HOH B 27 327 56 HOH HOH . F 3 HOH B 28 328 58 HOH HOH . F 3 HOH B 29 329 60 HOH HOH . F 3 HOH B 30 330 61 HOH HOH . F 3 HOH B 31 331 66 HOH HOH . F 3 HOH B 32 332 67 HOH HOH . F 3 HOH B 33 333 71 HOH HOH . F 3 HOH B 34 334 75 HOH HOH . F 3 HOH B 35 335 82 HOH HOH . F 3 HOH B 36 336 84 HOH HOH . F 3 HOH B 37 337 85 HOH HOH . F 3 HOH B 38 338 90 HOH HOH . F 3 HOH B 39 339 91 HOH HOH . F 3 HOH B 40 340 95 HOH HOH . F 3 HOH B 41 341 96 HOH HOH . F 3 HOH B 42 342 99 HOH HOH . F 3 HOH B 43 343 101 HOH HOH . F 3 HOH B 44 344 102 HOH HOH . F 3 HOH B 45 345 103 HOH HOH . F 3 HOH B 46 346 112 HOH HOH . F 3 HOH B 47 347 113 HOH HOH . F 3 HOH B 48 348 114 HOH HOH . F 3 HOH B 49 349 115 HOH HOH . F 3 HOH B 50 350 116 HOH HOH . F 3 HOH B 51 351 117 HOH HOH . F 3 HOH B 52 352 118 HOH HOH . F 3 HOH B 53 353 119 HOH HOH . F 3 HOH B 54 354 120 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 6.334 24.966 39.551 1 40.74 ? CHA HEM 300 A 1 HETATM 2 C CHB HEM . . . C 2 4.345 25.391 43.973 1 40.84 ? CHB HEM 300 A 1 HETATM 3 C CHC HEM . . . C 2 0.45 22.883 42.5 1 40.99 ? CHC HEM 300 A 1 HETATM 4 C CHD HEM . . . C 2 2.591 22.178 38.178 1 37.84 ? CHD HEM 300 A 1 HETATM 5 C C1A HEM . . . C 2 6.09 25.363 40.871 1 42.04 ? C1A HEM 300 A 1 HETATM 6 C C2A HEM . . . C 2 6.957 26.202 41.703 1 42.94 ? C2A HEM 300 A 1 HETATM 7 C C3A HEM . . . C 2 6.447 26.193 42.948 1 41.92 ? C3A HEM 300 A 1 HETATM 8 C C4A HEM . . . C 2 5.193 25.519 42.883 1 40.84 ? C4A HEM 300 A 1 HETATM 9 C CMA HEM . . . C 2 7.084 26.797 44.203 1 43.24 ? CMA HEM 300 A 1 HETATM 10 C CAA HEM . . . C 2 7.955 27.274 41.303 1 46.61 ? CAA HEM 300 A 1 HETATM 11 C CBA HEM . . . C 2 9.063 26.924 40.344 1 50.57 ? CBA HEM 300 A 1 HETATM 12 C CGA HEM . . . C 2 9.945 28.113 40.049 1 52.52 ? CGA HEM 300 A 1 HETATM 13 O O1A HEM . . . C 2 10.823 28.412 40.885 1 54.05 ? O1A HEM 300 A 1 HETATM 14 O O2A HEM . . . C 2 9.745 28.755 38.991 1 54.27 ? O2A HEM 300 A 1 HETATM 15 C C1B HEM . . . C 2 3.122 24.731 43.966 1 40.96 ? C1B HEM 300 A 1 HETATM 16 C C2B HEM . . . C 2 2.22 24.701 45.083 1 41.82 ? C2B HEM 300 A 1 HETATM 17 C C3B HEM . . . C 2 1.101 24.033 44.68 1 42.26 ? C3B HEM 300 A 1 HETATM 18 C C4B HEM . . . C 2 1.326 23.628 43.294 1 41.21 ? C4B HEM 300 A 1 HETATM 19 C CMB HEM . . . C 2 2.451 25.33 46.453 1 41.98 ? CMB HEM 300 A 1 HETATM 20 C CAB HEM . . . C 2 -0.041 23.913 45.473 1 42.88 ? CAB HEM 300 A 1 HETATM 21 C CBB HEM . . . C 2 -0.766 22.681 45.677 1 44.15 ? CBB HEM 300 A 1 HETATM 22 C C1C HEM . . . C 2 0.713 22.495 41.18 1 40.51 ? C1C HEM 300 A 1 HETATM 23 C C2C HEM . . . C 2 -0.168 21.622 40.404 1 40.21 ? C2C HEM 300 A 1 HETATM 24 C C3C HEM . . . C 2 0.477 21.339 39.255 1 40.32 ? C3C HEM 300 A 1 HETATM 25 C C4C HEM . . . C 2 1.719 22.088 39.266 1 39.81 ? C4C HEM 300 A 1 HETATM 26 C CMC HEM . . . C 2 -1.584 21.132 40.77 1 40.07 ? CMC HEM 300 A 1 HETATM 27 C CAC HEM . . . C 2 0.054 20.404 38.306 1 42.39 ? CAC HEM 300 A 1 HETATM 28 C CBC HEM . . . C 2 0.038 18.96 38.641 1 45.04 ? CBC HEM 300 A 1 HETATM 29 C C1D HEM . . . C 2 3.75 22.949 38.154 1 37.76 ? C1D HEM 300 A 1 HETATM 30 C C2D HEM . . . C 2 4.619 23.073 37.009 1 37.44 ? C2D HEM 300 A 1 HETATM 31 C C3D HEM . . . C 2 5.666 23.846 37.381 1 37.7 ? C3D HEM 300 A 1 HETATM 32 C C4D HEM . . . C 2 5.455 24.191 38.771 1 38.78 ? C4D HEM 300 A 1 HETATM 33 C CMD HEM . . . C 2 4.348 22.582 35.585 1 36.25 ? CMD HEM 300 A 1 HETATM 34 C CAD HEM . . . C 2 6.743 24.353 36.409 1 37.78 ? CAD HEM 300 A 1 HETATM 35 C CBD HEM . . . C 2 6.95 25.855 36.227 1 37.04 ? CBD HEM 300 A 1 HETATM 36 C CGD HEM . . . C 2 7.912 26.177 35.096 1 37.19 ? CGD HEM 300 A 1 HETATM 37 O O1D HEM . . . C 2 7.486 26.175 33.92 1 34.52 ? O1D HEM 300 A 1 HETATM 38 O O2D HEM . . . C 2 9.101 26.42 35.38 1 39.76 ? O2D HEM 300 A 1 HETATM 39 N NA HEM . . . C 2 4.968 24.969 41.602 1 40.26 ? NA HEM 300 A 1 HETATM 40 N NB HEM . . . C 2 2.572 24.076 42.854 1 40.92 ? NB HEM 300 A 1 HETATM 41 N NC HEM . . . C 2 1.877 22.778 40.475 1 39.54 ? NC HEM 300 A 1 HETATM 42 N ND HEM . . . C 2 4.252 23.661 39.229 1 39.43 ? ND HEM 300 A 1 HETATM 43 FE FE HEM . . . C 2 3.437 23.82 41.053 1 39.76 ? FE HEM 300 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #